Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005868

Physical Location & Seq

Genomic Coordinates Forward (+)

10112884 .. 10115559

Gene Structure 2676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1054200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGCGCCATTAACATCACGAACGTGACGGTGCTCGACAATCCGGCTCTGGACAATCCGGCTCTGTTTCTGGCACCCTTCCAGTTCGAAATTTCTTACGATTGCAACACTGCTTTCAAAGACGATTTGGAATGGAAGCTCATCTACGTGGGATCTGCTGAGGATGAGACTTATGACCAACTACTGGAGAGTGTACTTGTTGGGCCCGTCAATGTCGGAAACTATCGTTTTATACTACAGGCAGATCCTCCTGACCCATCCACGATTCGTGATGAAGACATCATTGGTGTGACAGTGCTTTTGTTGACCTGCTCTTATATTGGTCAGGAATTTATCCGAGTGGACTACTATGTTAACAATGATTATGATGATGAGCAGCTGCGAGAAGAACCTCCTCCAAAGGTCTTGATTGATAGGGTTCAAAGAAACATTTTGTCTGATAAGCCCAGGGTCACGAAGTTCCCCATCAATTTCCAGCTAGAGAATACTGAGAGTGGAGAACAACCCTCTCCACTTGATCAGCCTAATGGGGCGGATGGAAGCGGAGAACAGCTAGTTTTGCCTGTAGATCCTTCAGAGGAGCAGAAACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000785 GO:0000790 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009292 GO:0009294 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0022402 GO:0030154 GO:0030874 GO:0030875 GO:0031567 GO:0031974 GO:0031981 GO:0032502 GO:0032535 GO:0032989 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044764 GO:0045786 GO:0045930 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051704 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090066 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASF1_hist_chap

Protein Analysis

198

Amino Acids

22.17

Weight (kDa)

4.05

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ASF1_hist_chap	PF04729	1 - 158	1.4e-65	ASF1 like histone chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66740 AT5G38110
fragaria_vesca	FvH4_4g26330
malus_domestica	MD00G1054200.v1.1 MD09G1258300.v1.1 MD13G1031600.v1.1 MD16G1033700.v1.1
prunus_persica	Prupe.1G320600_v2.0.a1 Prupe.3G150200_v2.0.a1
pyrus_communis	pycom09g17320 pycom13g02760 pycom16g02830 pycom17g25530
rosa_chinensis	RchiOBHm_Chr4g0433911
rosa_laevigata	RLG00000006718
rosa_multiflora	Rmu_sc0000352.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307590 Rroxscaffold_5G00375330
rosa_rugosa	Rorug04G0272200
rosa_samantha	Rh4AG327200 Rh4BG334500 Rh4CG350300 Rh4DG331400 Rh5BG464100 Rh5CG486100 Rh5DG478100
rosa_wichuraiana	Rw2G041650 Rw4G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	184
AciI	CCGC	2 cut(s)	533, 543
AclWI	GGATC	3 cut(s)	160, 239, 563
AcsI	RAATTY	2 cut(s)	90, 329
AcuI	CTGAAG	1 cut(s)	558
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	2 cut(s)	118, 422
AjnI	CCWGG	1 cut(s)	446
AjuI	GAANNNNNNNTTGG	2 cut(s)	267, 299
AleI	CACNNNNGTG	1 cut(s)	23
AluBI	AGCT	4 cut(s)	139, 379, 478, 553
AluI	AGCT	4 cut(s)	139, 379, 478, 553
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	3 cut(s)	160, 239, 563
AoxI	GGCC	1 cut(s)	203
ApaI	GGGCCC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	376, 379
ApoI	RAATTY	2 cut(s)	90, 329
ArsI	GACNNNNNNTTYG	2 cut(s)	283, 315
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	203, 204
AsuII	TTCGAA	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	207
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	36
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	366, 388
BccI	CCATC	3 cut(s)	265, 473, 530
BciT130I	CCWGG	1 cut(s)	448
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	2 cut(s)	479, 554
BfmI	CTRYAG	2 cut(s)	236, 564
BfoI	RGCGCY	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	317
BisI	GCNGC	2 cut(s)	377, 380
BlsI	GCNGC	2 cut(s)	378, 381
Bme1390I	CCNGG	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	203, 204
BmiI	GGNNCC	2 cut(s)	75, 205
BmrFI	CCNGG	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	87
BsaAI	YACGTR	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	446, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	2 cut(s)	82, 189
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	2 cut(s)	446, 447
BseGI	GGATG	3 cut(s)	169, 257, 541
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMII	CTCAG	2 cut(s)	150, 480
BseNI	ACTGG	2 cut(s)	82, 189
BseRI	GAGGAG	2 cut(s)	384, 593
BseSI	GKGCMC	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	366, 388
BshFI	GGCC	1 cut(s)	205
BshNI	GGYRCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	44, 59
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	205
Bsp119I	TTCGAA	1 cut(s)	87
Bsp120I	GGGCCC	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	36, 207
Bsp143I	GATC	4 cut(s)	152, 244, 517, 568
BspACI	CCGC	2 cut(s)	533, 543
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	2 cut(s)	151, 481
BspLI	GGNNCC	2 cut(s)	75, 205
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	3 cut(s)	160, 239, 563
BspT104I	TTCGAA	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	82, 189
BssECI	CCNNGG	2 cut(s)	446, 447
BssMI	GATC	4 cut(s)	152, 244, 517, 568
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	2 cut(s)	31, 295
BstBAI	YACGTR	1 cut(s)	148
BstBI	TTCGAA	1 cut(s)	87
BstDEI	CTNAG	3 cut(s)	159, 489, 591
BstF5I	GGATG	3 cut(s)	169, 257, 541
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	4 cut(s)	155, 247, 520, 571
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	4 cut(s)	152, 244, 517, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	559
BstNI	CCWGG	1 cut(s)	448
BstSCI	CCNGG	1 cut(s)	446
BstSFI	CTRYAG	2 cut(s)	236, 564
BstSLI	GKGCMC	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	366, 388
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	3 cut(s)	152, 244, 568
BstYI	RGATCY	3 cut(s)	152, 244, 568
BsuRI	GGCC	1 cut(s)	205
BtsCI	GGATG	3 cut(s)	169, 257, 541
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	2 cut(s)	108, 300
BveI	ACCTGC	1 cut(s)	317
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	203, 204
Csp6I	GTAC	1 cut(s)	194
CviJI	RGCY	9 cut(s)	47, 62, 139, 205, 379, 445, 478, 523, 553
CviKI_1	RGCY	9 cut(s)	47, 62, 139, 205, 379, 445, 478, 523, 553
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	3 cut(s)	159, 489, 591
DpnI	GATC	4 cut(s)	154, 246, 519, 570
DpnII	GATC	4 cut(s)	152, 244, 517, 568
EciI	GGCGGA	1 cut(s)	548
Eco24I	GRGCYC	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	207
FaiI	YATR	5 cut(s)	174, 233, 318, 351, 366
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	2 cut(s)	377, 380
FokI	GGATG	3 cut(s)	176, 244, 548
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	2 cut(s)	377, 380
FspBI	CTAG	2 cut(s)	479, 554
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	2 cut(s)	377, 380
GsuI	CTGGAG	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	2 cut(s)	44, 59
HhaI	GCGC	1 cut(s)	8
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HincII	GTYRAC	2 cut(s)	306, 355
HindII	GTYRAC	2 cut(s)	306, 355
HinfI	GANTC	1 cut(s)	265
HpaI	GTTAAC	1 cut(s)	355
HpaII	CCGG	2 cut(s)	44, 59
Hpy166II	GTNNAC	4 cut(s)	194, 306, 343, 355
Hpy188I	TCNGA	4 cut(s)	218, 338, 439, 577
Hpy188III	TCNNGA	7 cut(s)	19, 50, 251, 269, 326, 406, 454
Hpy8I	GTNNAC	4 cut(s)	194, 306, 343, 355
HpyAV	CCTTC	2 cut(s)	88, 582
HpyCH4III	ACNGT	2 cut(s)	31, 295
HpyCH4IV	ACGT	2 cut(s)	24, 147
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	1 cut(s)	559
HpyF3I	CTNAG	3 cut(s)	159, 489, 591
HpySE526I	ACGT	2 cut(s)	24, 147
HspAI	GCGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	517
KspAI	GTTAAC	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	152, 244, 517, 568
LmnI	GCTCC	1 cut(s)	580
Lsp1109I	GCAGC	2 cut(s)	366, 388
MaeI	CTAG	2 cut(s)	479, 554
MaeII	ACGT	2 cut(s)	24, 147
MaeIII	GTNAC	3 cut(s)	25, 289, 451
MalI	GATC	4 cut(s)	154, 246, 519, 570
MboI	GATC	4 cut(s)	152, 244, 517, 568
MboII	GAAGA	2 cut(s)	287, 398
MflI	RGATCY	3 cut(s)	152, 244, 568
MhlI	GDGCHC	2 cut(s)	36, 207
MluCI	AATT	3 cut(s)	90, 329, 469
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	6 cut(s)	154, 258, 402, 405, 517, 571
MseI	TTAA	2 cut(s)	12, 354
MslI	CAYNNNNRTG	3 cut(s)	23, 146, 287
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	2 cut(s)	44, 59
MspR9I	CCNGG	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	448
MwoI	GCNNNNNNNGC	1 cut(s)	559
NdeII	GATC	4 cut(s)	152, 244, 517, 568
NlaIV	GGNNCC	2 cut(s)	75, 205
NmuCI	GTSAC	3 cut(s)	25, 289, 451
NspV	TTCGAA	1 cut(s)	87
OliI	CACNNNNGTG	1 cut(s)	23
PasI	CCCWGGG	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	265
PflMI	CCANNNNNTGG	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	378, 381
Ppu21I	YACGTR	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	2 cut(s)	75, 205
PspOMI	GGGCCC	1 cut(s)	203
PspPI	GGNCC	2 cut(s)	203, 204
PsuI	RGATCY	3 cut(s)	152, 244, 568
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
RseI	CAYNNNNRTG	3 cut(s)	23, 146, 287
SaqAI	TTAA	2 cut(s)	12, 354
SatI	GCNGC	2 cut(s)	377, 380
Sau3AI	GATC	4 cut(s)	152, 244, 517, 568
Sau96I	GGNCC	2 cut(s)	203, 204
ScrFI	CCNGG	1 cut(s)	448
SduI	GDGCHC	2 cut(s)	36, 207
SfcI	CTRYAG	2 cut(s)	236, 564
SfuI	TTCGAA	1 cut(s)	87
SmiMI	CAYNNNNRTG	3 cut(s)	23, 146, 287
Sse9I	AATT	3 cut(s)	90, 329, 469
SsiI	CCGC	2 cut(s)	533, 543
SspMI	CTAG	2 cut(s)	479, 554
StyD4I	CCNGG	1 cut(s)	446
TaaI	ACNGT	2 cut(s)	31, 295
TaiI	ACGT	2 cut(s)	27, 150
TaqI	TCGA	2 cut(s)	36, 87
TasI	AATT	3 cut(s)	90, 329, 469
TatI	WGTACW	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	2 cut(s)	12, 354
Tru9I	TTAA	2 cut(s)	12, 354
TscAI	CASTG	2 cut(s)	115, 300
TseFI	GTSAC	3 cut(s)	25, 289, 451
TseI	GCWGC	2 cut(s)	376, 379
Tsp45I	GTSAC	3 cut(s)	25, 289, 451
TspDTI	ATGAA	1 cut(s)	288
TspRI	CASTG	2 cut(s)	115, 300
Van91I	CCANNNNNTGG	1 cut(s)	184
XapI	RAATTY	2 cut(s)	90, 329
XspI	CTAG	2 cut(s)	479, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.