Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005868

Physical Location & Seq

Genomic Coordinates Reverse (-)

30752341 .. 30754487

Gene Structure 2147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G320600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAGCGCCGTCAACCTTACAAACGTTGCCGTTCTGGACAACCCGGCCGCTTTCCTCAGCCCTTTTCAGTTCGAAATCTCATACGAGTGCTTGACTCCCCTCAAAGACGACTTGGAATGGAAGCTCATATATGTGGGATCTGCTGAAGATGAGACTTATGACCAACTATTGGAGAGTGTGCTTGTTGGTCCTGTCAATGTTGGAAACTACCGTTTTGTCTTTCAGGCAGACCCTCCAGATCCGTCAAAAATACGCGAGGAAGATATCATTGGTGTCACTGTACTGCTATTGACATGTTCTTATCTGGGGCAGGAGTTTGTTAGAGTGGGGTACTATGTGAACAATGATTATGATGATGAACAGCTAAGGGAGGAACCTCCCTCTAAGGTGTTGGTTGATAGGGTTCAGAGAAACATTTTGGCTGACAAGCCTAGAGTCACAAAGTTCCCTATTAATTTTCATCCCGAGAACAATGAACATGAGGAGCAGGCCCCTCATTCCCCTGATCATGGAACTGAAACAAAGCAGCCCCCTCCTTCGCCTGATCGTGCAACTGAAGCAAACATTAAGGGAGAAGAACGACCCCTATCACCTGTATCATCTGTCCGTGTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000724 GO:0000725 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009292 GO:0009294 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0022402 GO:0030154 GO:0031567 GO:0032502 GO:0032535 GO:0032989 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044764 GO:0045786 GO:0045930 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051704 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASF1_hist_chap

Protein Analysis

206

Amino Acids

23.17

Weight (kDa)

4.52

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66740 AT5G38110
fragaria_vesca	FvH4_4g26330
malus_domestica	MD00G1054200.v1.1 MD09G1258300.v1.1 MD13G1031600.v1.1 MD16G1033700.v1.1
prunus_persica	Prupe.1G320600_v2.0.a1 Prupe.3G150200_v2.0.a1
pyrus_communis	pycom09g17320 pycom13g02760 pycom16g02830 pycom17g25530
rosa_chinensis	RchiOBHm_Chr4g0433911
rosa_laevigata	RLG00000006718
rosa_multiflora	Rmu_sc0000352.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307590 Rroxscaffold_5G00375330
rosa_rugosa	Rorug04G0272200
rosa_samantha	Rh4AG327200 Rh4BG334500 Rh4CG350300 Rh4DG331400 Rh5BG464100 Rh5CG486100 Rh5DG478100
rosa_wichuraiana	Rw2G041650 Rw4G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	169
AccII	CGCG	1 cut(s)	255
AciI	CCGC	1 cut(s)	48
AclI	AACGTT	1 cut(s)	24
AclWI	GGATC	2 cut(s)	145, 233
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	2 cut(s)	165, 576
AfaI	GTAC	2 cut(s)	282, 332
AfiI	CCNNNNNNNGG	2 cut(s)	169, 509
AflIII	ACRYGT	1 cut(s)	293
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	2 cut(s)	124, 364
AluI	AGCT	2 cut(s)	124, 364
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	145, 233
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	2 cut(s)	45, 489
ApeKI	GCWGC	1 cut(s)	526
AseI	ATTAAT	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	188, 490
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	582
AsuII	TTCGAA	1 cut(s)	72
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	188
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	538
BceAI	ACGGC	1 cut(s)	14
BclI	TGATCA	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	9
BisI	GCNGC	2 cut(s)	48, 527
BlsI	GCNGC	2 cut(s)	49, 528
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	188, 490
BmiI	GGNNCC	2 cut(s)	375, 492
BmrFI	CCNGG	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	219
Bpu10I	CCTNAGC	2 cut(s)	56, 365
Bpu14I	TTCGAA	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 509
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	169, 509
BseMII	CTCAG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	497
BseX3I	CGGCCG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	538
Bsh1236I	CGCG	1 cut(s)	255
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	47, 491
BsiEI	CGRYCG	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	169, 509
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	47, 491
BsoBI	CYCGRG	1 cut(s)	464
Bsp119I	TTCGAA	1 cut(s)	72
Bsp143I	GATC	4 cut(s)	137, 238, 505, 544
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	47, 491
BspCNI	CTCAG	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	375, 492
BspPI	GGATC	2 cut(s)	145, 233
BspT104I	TTCGAA	1 cut(s)	72
BssMI	GATC	4 cut(s)	137, 238, 505, 544
Bst4CI	ACNGT	2 cut(s)	212, 280
BstBI	TTCGAA	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	3 cut(s)	56, 365, 384
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	255
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	4 cut(s)	140, 241, 508, 547
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	137, 238, 505, 544
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	557
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	42
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	538
BstX2I	RGATCY	2 cut(s)	137, 238
BstYI	RGATCY	2 cut(s)	137, 238
BstZI	CGGCCG	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	47, 491
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	489
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	188, 490
Csp6I	GTAC	2 cut(s)	281, 331
CviAII	CATG	3 cut(s)	294, 479, 509
CviJI	RGCY	8 cut(s)	47, 60, 124, 364, 422, 430, 491, 529
CviKI_1	RGCY	8 cut(s)	47, 60, 124, 364, 422, 430, 491, 529
CviQI	GTAC	2 cut(s)	281, 331
DdeI	CTNAG	3 cut(s)	56, 365, 384
DpnI	GATC	4 cut(s)	139, 240, 507, 546
DpnII	GATC	4 cut(s)	137, 238, 505, 544
EaeI	YGGCCR	1 cut(s)	45
EagI	CGGCCG	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	188
Eco52I	CGGCCG	1 cut(s)	45
Eco57I	CTGAAG	2 cut(s)	165, 576
Eco88I	CYCGRG	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRV	GATATC	1 cut(s)	265
FaeI	CATG	3 cut(s)	297, 482, 512
FatI	CATG	3 cut(s)	293, 478, 508
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	48, 527
FokI	GGATG	1 cut(s)	447
Fsp4HI	GCNGC	2 cut(s)	48, 527
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	2 cut(s)	48, 527
GsuI	CTGGAG	1 cut(s)	219
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	47, 491
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	3 cut(s)	297, 482, 512
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	94, 435
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	582
Hpy166II	GTNNAC	2 cut(s)	13, 340
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	3 cut(s)	35, 236, 464
Hpy8I	GTNNAC	2 cut(s)	13, 340
HpyAV	CCTTC	1 cut(s)	546
HpyCH4III	ACNGT	2 cut(s)	212, 280
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	551, 613
HpyF10VI	GCNNNNNNNGC	1 cut(s)	557
HpyF3I	CTNAG	3 cut(s)	56, 365, 384
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	297, 482, 512
HspAI	GCGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	4 cut(s)	137, 238, 505, 544
LmnI	GCTCC	1 cut(s)	484
Lsp1109I	GCAGC	1 cut(s)	538
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	274, 436
MalI	GATC	4 cut(s)	139, 240, 507, 546
MboI	GATC	4 cut(s)	137, 238, 505, 544
MboII	GAAGA	3 cut(s)	158, 272, 587
MflI	RGATCY	2 cut(s)	137, 238
MluCI	AATT	1 cut(s)	454
MlyI	GAGTC	2 cut(s)	88, 444
MmeI	TCCRAC	1 cut(s)	181
MseI	TTAA	2 cut(s)	453, 567
MslI	CAYNNNNRTG	2 cut(s)	85, 131
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	44
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	557
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	4 cut(s)	137, 238, 505, 544
NlaIII	CATG	3 cut(s)	297, 482, 512
NlaIV	GGNNCC	2 cut(s)	375, 492
NmuCI	GTSAC	2 cut(s)	274, 436
NspI	RCATGY	1 cut(s)	297
NspV	TTCGAA	1 cut(s)	72
PciI	ACATGT	1 cut(s)	293
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	49, 528
PleI	GAGTC	2 cut(s)	88, 443
PpsI	GAGTC	2 cut(s)	88, 443
PscI	ACATGT	1 cut(s)	293
PshBI	ATTAAT	1 cut(s)	453
Psp1406I	AACGTT	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	375, 492
PspPI	GGNCC	2 cut(s)	188, 490
PsuI	RGATCY	2 cut(s)	137, 238
RsaI	GTAC	2 cut(s)	282, 332
RsaNI	GTAC	2 cut(s)	281, 331
RseI	CAYNNNNRTG	2 cut(s)	85, 131
SaqAI	TTAA	2 cut(s)	453, 567
SatI	GCNGC	2 cut(s)	48, 527
Sau3AI	GATC	4 cut(s)	137, 238, 505, 544
Sau96I	GGNCC	2 cut(s)	188, 490
SchI	GAGTC	2 cut(s)	88, 444
ScrFI	CCNGG	1 cut(s)	44
SetI	ASST	7 cut(s)	18, 27, 126, 366, 379, 390, 595
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	1 cut(s)	188
SmiMI	CAYNNNNRTG	2 cut(s)	85, 131
Sse9I	AATT	1 cut(s)	454
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	2 cut(s)	212, 280
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	454
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	50
Tru1I	TTAA	2 cut(s)	453, 567
Tru9I	TTAA	2 cut(s)	453, 567
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	2 cut(s)	274, 436
TseI	GCWGC	1 cut(s)	526
Tsp45I	GTSAC	2 cut(s)	274, 436
TspDTI	ATGAA	3 cut(s)	372, 449, 489
TspGWI	ACGGA	2 cut(s)	231, 596
TspRI	CASTG	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	188
VspI	ATTAAT	1 cut(s)	453
XceI	RCATGY	1 cut(s)	297
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.