Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005868

Physical Location & Seq

Genomic Coordinates Forward (+)

15208358 .. 15210335

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAGCTCTATCAATATCACTAACGTCACCGTCTTGGACAATCCTGCTCCGTTTGTGAATCCATTCCAGTTCGAGATTTCTTACGAATGCTTGACCTCTCTCAAAGACGATTTGGAATGGAAGCTTATATACGTAGGGTCAGCTGAAGACGAAACGTATGATCAAGTTTTGGAAAGTGTTCTTGTTGGTCCTGTTAACGTTGGGAACTATCGATTTGTGTTGCAGGCTGACTCTCCAGATCCGTTAAAGATTCGTGAGGAAGATATTATTGGTGTTACTGTGTTATTGTTGACTTGCTCATACATGGATCAAGAGTTTATAAGAGTTGGCTATTATGTGAACAATGACTATGATGATGAACAGCTCAGGGAAGAGCCTCCTACCAAGGTTTTGATTGATAAGGTCCAAAGGAACATACTCACAGACAAACCTAGAGTAACTAAGTTCCCTATCAACTTTCATCCTGAGAATGAGCAGACTCTTGGTGATGGGCCTGCACCTACTGAACCATTTGCTGATTCTGTTGTAAATGGAGAAGCTCCGGTGTTTCTTGAGCAGCCACAAAAGCTTCAGGAGATAGAACAATTTGATGATTCTGATGTAAATGGAGAAGCTATAGCGTTGCTTGATCAGCCACAAAATCTCCAGGAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000785 GO:0000790 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009292 GO:0009294 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0022402 GO:0030154 GO:0030874 GO:0030875 GO:0031567 GO:0031974 GO:0031981 GO:0032502 GO:0032535 GO:0032989 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044764 GO:0045786 GO:0045930 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051704 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090066 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASF1_hist_chap

Protein Analysis

218

Amino Acids

24.7

Weight (kDa)

4.05

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ASF1_hist_chap	PF04729	1 - 154	3.6e-72	ASF1 like histone chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66740 AT5G38110
fragaria_vesca	FvH4_4g26330
malus_domestica	MD00G1054200.v1.1 MD09G1258300.v1.1 MD13G1031600.v1.1 MD16G1033700.v1.1
prunus_persica	Prupe.1G320600_v2.0.a1 Prupe.3G150200_v2.0.a1
pyrus_communis	pycom09g17320 pycom13g02760 pycom16g02830 pycom17g25530
rosa_chinensis	RchiOBHm_Chr4g0433911
rosa_laevigata	RLG00000006718
rosa_multiflora	Rmu_sc0000352.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307590 Rroxscaffold_5G00375330
rosa_rugosa	Rorug04G0272200
rosa_samantha	Rh4AG327200 Rh4BG334500 Rh4CG350300 Rh4DG331400 Rh5BG464100 Rh5CG486100 Rh5DG478100
rosa_wichuraiana	Rw2G041650 Rw4G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	320
AclI	AACGTT	1 cut(s)	198
AclWI	GGATC	2 cut(s)	233, 315
AcuI	CTGAAG	2 cut(s)	165, 554
AjnI	CCWGG	1 cut(s)	645
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	7 cut(s)	6, 124, 143, 364, 539, 568, 614
AluI	AGCT	7 cut(s)	6, 124, 143, 364, 539, 568, 614
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	644
AlwI	GGATC	2 cut(s)	233, 315
AoxI	GGCC	1 cut(s)	491
ApeKI	GCWGC	1 cut(s)	556
Asp700I	GAANNNNTTC	2 cut(s)	62, 177
AspS9I	GGNCC	3 cut(s)	188, 403, 491
AsuHPI	GGTGA	2 cut(s)	19, 497
AvaII	GGWCC	2 cut(s)	188, 403
BanII	GRGCYC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	113, 145
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	568
BccI	CCATC	1 cut(s)	482
BciT130I	CCWGG	1 cut(s)	647
BclI	TGATCA	2 cut(s)	160, 628
BcoDI	GTCTC	1 cut(s)	644
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	1 cut(s)	615
BisI	GCNGC	1 cut(s)	557
BlsI	GCNGC	1 cut(s)	558
Bme1390I	CCNGG	1 cut(s)	647
Bme18I	GGWCC	2 cut(s)	188, 403
BmgT120I	GGNCC	3 cut(s)	188, 403, 491
BmrFI	CCNGG	1 cut(s)	647
BpiI	GAAGAC	1 cut(s)	153
BpmI	CTGGAG	2 cut(s)	219, 629
Bpu10I	CCTNAGC	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	572
Bsa29I	ATCGAT	1 cut(s)	211
BsaAI	YACGTR	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	384
BsaWI	WCCGGW	1 cut(s)	541
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bse1I	ACTGG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	647
BseCI	ATCGAT	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	460
BseMII	CTCAG	2 cut(s)	379, 456
BseNI	ACTGG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	568
BsgI	GTGCAG	1 cut(s)	480
BshFI	GGCC	1 cut(s)	493
BshVI	ATCGAT	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	542
BsmAI	GTCTC	1 cut(s)	644
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	493
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	160, 238, 307, 628
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	2 cut(s)	378, 457
BspDI	ATCGAT	1 cut(s)	211
BspPI	GGATC	2 cut(s)	233, 315
BspQI	GCTCTTC	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	4 cut(s)	160, 238, 307, 628
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	2 cut(s)	31, 280
Bst6I	CTCTTC	1 cut(s)	366
BstBAI	YACGTR	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	225, 495
BstDEI	CTNAG	3 cut(s)	365, 441, 465
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	4 cut(s)	163, 241, 310, 631
BstMAI	GTCTC	1 cut(s)	644
BstMBI	GATC	4 cut(s)	160, 238, 307, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	565, 631
BstNI	CCWGG	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	645
BstSFI	CTRYAG	1 cut(s)	615
BstSNI	TACGTA	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	568
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	493
BsuTUI	ATCGAT	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	225, 495
Cfr13I	GGNCC	3 cut(s)	188, 403, 491
ClaI	ATCGAT	1 cut(s)	211
CviAII	CATG	2 cut(s)	304, 654
DdeI	CTNAG	3 cut(s)	365, 441, 465
DpnI	GATC	4 cut(s)	162, 240, 309, 630
DpnII	GATC	4 cut(s)	160, 238, 307, 628
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Ecl136II	GAGCTC	1 cut(s)	6
Eco105I	TACGTA	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	188, 403
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	165, 554
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	645
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	2 cut(s)	307, 657
FatI	CATG	2 cut(s)	303, 653
FbaI	TGATCA	2 cut(s)	160, 628
Fnu4HI	GCNGC	1 cut(s)	557
FokI	GGATG	1 cut(s)	447
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	557
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	1 cut(s)	557
GsuI	CTGGAG	2 cut(s)	219, 629
HaeIII	GGCC	1 cut(s)	493
HapII	CCGG	1 cut(s)	542
Hin1II	CATG	2 cut(s)	307, 657
HincII	GTYRAC	2 cut(s)	196, 291
HindII	GTYRAC	2 cut(s)	196, 291
HindIII	AAGCTT	2 cut(s)	122, 566
HinfI	GANTC	6 cut(s)	58, 230, 250, 478, 518, 593
HpaI	GTTAAC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	2 cut(s)	19, 497
Hpy166II	GTNNAC	3 cut(s)	196, 291, 340
Hpy188I	TCNGA	1 cut(s)	598
Hpy188III	TCNNGA	7 cut(s)	73, 236, 254, 311, 464, 551, 572
Hpy8I	GTNNAC	3 cut(s)	196, 291, 340
HpyCH4III	ACNGT	2 cut(s)	31, 280
HpyCH4IV	ACGT	4 cut(s)	24, 132, 155, 198
HpyCH4V	TGCA	2 cut(s)	223, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	565, 631
HpyF3I	CTNAG	3 cut(s)	365, 441, 465
HpySE526I	ACGT	4 cut(s)	24, 132, 155, 198
Hsp92II	CATG	2 cut(s)	307, 657
Ksp22I	TGATCA	2 cut(s)	160, 628
KspAI	GTTAAC	1 cut(s)	196
Kzo9I	GATC	4 cut(s)	160, 238, 307, 628
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	2 cut(s)	52, 544
Lsp1109I	GCAGC	1 cut(s)	568
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	4 cut(s)	24, 132, 155, 198
MaeIII	GTNAC	3 cut(s)	25, 274, 436
MalI	GATC	4 cut(s)	162, 240, 309, 630
MboI	GATC	4 cut(s)	160, 238, 307, 628
MboII	GAAGA	3 cut(s)	158, 272, 383
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	584
MlyI	GAGTC	2 cut(s)	224, 472
MnlI	CCTC	3 cut(s)	106, 250, 387
MroXI	GAANNNNTTC	2 cut(s)	62, 177
MseI	TTAA	2 cut(s)	195, 245
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	647
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	647
MwoI	GCNNNNNNNGC	2 cut(s)	565, 631
NdeII	GATC	4 cut(s)	160, 238, 307, 628
NlaIII	CATG	2 cut(s)	307, 657
NmuCI	GTSAC	1 cut(s)	25
PciSI	GCTCTTC	1 cut(s)	366
PctI	GAATGC	1 cut(s)	92
PdmI	GAANNNNTTC	2 cut(s)	62, 177
PfeI	GAWTC	4 cut(s)	58, 250, 518, 593
PfoI	TCCNGGA	1 cut(s)	645
PkrI	GCNGC	1 cut(s)	558
PleI	GAGTC	2 cut(s)	224, 472
PpsI	GAGTC	2 cut(s)	224, 472
Ppu21I	YACGTR	1 cut(s)	133
PsiI	TTATAA	1 cut(s)	320
Psp124BI	GAGCTC	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	645
PspPI	GGNCC	3 cut(s)	188, 403, 491
PsuI	RGATCY	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	195, 245
SatI	GCNGC	1 cut(s)	557
Sau3AI	GATC	4 cut(s)	160, 238, 307, 628
Sau96I	GGNCC	3 cut(s)	188, 403, 491
SchI	GAGTC	2 cut(s)	224, 472
ScrFI	CCNGG	1 cut(s)	647
SduI	GDGCHC	1 cut(s)	8
SfcI	CTRYAG	1 cut(s)	615
SinI	GGWCC	2 cut(s)	188, 403
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
SnaBI	TACGTA	1 cut(s)	133
Sse9I	AATT	1 cut(s)	584
SspMI	CTAG	1 cut(s)	432
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	645
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	2 cut(s)	31, 280
TaiI	ACGT	4 cut(s)	27, 135, 158, 201
TaqI	TCGA	2 cut(s)	72, 211
TasI	AATT	1 cut(s)	584
TfiI	GAWTC	4 cut(s)	58, 250, 518, 593
Tru1I	TTAA	2 cut(s)	195, 245
Tru9I	TTAA	2 cut(s)	195, 245
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	556
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	372, 449
TspGWI	ACGGA	2 cut(s)	39, 231
VpaK11BI	GGWCC	2 cut(s)	188, 403
XmnI	GAANNNNTTC	2 cut(s)	62, 177
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.