Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004018

Physical Location & Seq

Genomic Coordinates Reverse (-)

25188238 .. 25190694

Gene Structure 2457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G67280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGTGAGGATCATTCCTATGGCTGCTTCCTCCATTCGACCTTCCCTCGCCTGCTTCTCTGATTCTCCTCGCTTCCCCATCTCCCTCCTCTCCAGAAATCTCTCTCGCACTCTCCATGTTCCTCAATCACAGCTTTTTGGTTTAACTTCTCATAAGCTTTTGAGAAGAAGTGTAAACTGTTTAGGAGTTGCTGAATCTGGTAAAGCAGCTCAAGCTACTACACAAGATGATCTTCTCACCTGGGTTAAGAATGATAAGAGAAGAATGCTTCATGTTGTTTATCGTGTTGGCGATATGGACCGGACGATAAAGTTTTATACTGAATGTCTTGGGATGAAGCTTCTACGTAAGCGTGATATACCAGAAGAGAAGTATACTAATGCTTTCCTTGGTTATGGACCGGAAGATTCACACTTTGTGATTGAGCTTACTTATAATTATGGAGTTGACAAGTATGACATTGGGGCTGGTTTTGGTCACTTTGGTATTGCGGTCGATGATGTGGCGAAAACTGTAGAGCTTGTGAAAGCCAAAGGGGGAAAAGTAAGCCGGGAGCCTGGTCCTGTCAAAGGTGGCAAAACTGTAATAGCATTCATTGAAGATCCTGATGGTTACAAATTTGAACTCTTGGAAAGAGGTCCTACACCAGAACCTCTTTGCCAAGTTATGCTCCGTGTTGGTGATCTCGATAGGGCCATAAAGTTCTATGAGAAGGCTTTTGGAATGGAACTTCTGCGAACAAGAGACAACCCAGAGTACAAGTACACAATAGCCATGATGGGATATGGTCCAGAAGATAAATTTCCTGTCCTAGAGCTGACATATAACTATGGTGTCACTGAATATGATAAAGGAAATGCTTATGCTCAGATAGCAATAGGGACGGATGATGTGTACAAAACTGCAGAAGCTATAAAACTCTTTGGGGGAAAAATCACGAGGGAGCCTGGTCCCTTACCAGGTATTAGCACGAAGATCACCGCGTGTCTGGATCCTGATGGTTGGAAATCGGTATTTGTGGACAACATTGACTTTCTCAAAGAACTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009438 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009987 GO:0010319 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0031967 GO:0031975 GO:0031977 GO:0032787 GO:0042180 GO:0042182 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

350

Amino Acids

39.17

Weight (kDa)

6.97

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	89 - 209	7.4e-28	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	91 - 195	1.1e-09	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase	PF00903	221 - 336	1.8e-18	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67280 AT1G67280
fragaria_vesca	FvH4_1g05730 FvH4_1g05730 FvH4_2g35710 FvH4_2g35710
malus_domestica	MD02G1058400.v1.1 MD15G1094500.v1.1 MD15G1192700.v1.1
prunus_persica	Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.7G224600_v2.0.a1 Prupe.7G224600_v2.0.a1
pyrus_communis	pycom15g08730
rosa_chinensis	RchiOBHm_Chr2g0091371 RchiOBHm_Chr6g0306071
rosa_laevigata	RLG00000010826 RLG00000016218
rosa_multiflora	Rmu_sc0025018.1_g000002
rosa_roxburghii	Rroxscaffold_2G00150140 Rroxscaffold_7G00162080
rosa_rugosa	Rorug02G0017000 Rorug06G0346800
rosa_samantha	Rh2BG061200 Rh2CG063300 Rh6AG458900 Rh6BG441900 Rh6CG473400 Rh6DG459700
rosa_wichuraiana	Rw2G004790 Rw6G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
AccI	GTMKAC	1 cut(s)	374
AccII	CGCG	1 cut(s)	983
AciI	CCGC	2 cut(s)	491, 981
AclWI	GGATC	4 cut(s)	17, 596, 986, 999
AcsI	RAATTY	2 cut(s)	617, 800
AdeI	CACNNNGTG	2 cut(s)	418, 984
AfaI	GTAC	3 cut(s)	758, 764, 896
AfiI	CCNNNNNNNGG	2 cut(s)	569, 959
AgsI	TTSAA	2 cut(s)	599, 623
AjnI	CCWGG	4 cut(s)	239, 556, 946, 958
AluBI	AGCT	9 cut(s)	133, 157, 209, 215, 340, 427, 520, 817, 911
AluI	AGCT	9 cut(s)	133, 157, 209, 215, 340, 427, 520, 817, 911
Alw26I	GTCTC	1 cut(s)	738
AlwI	GGATC	4 cut(s)	17, 596, 986, 999
AoxI	GGCC	1 cut(s)	693
ApeKI	GCWGC	2 cut(s)	23, 206
ApoI	RAATTY	2 cut(s)	617, 800
AspS9I	GGNCC	7 cut(s)	298, 398, 560, 638, 693, 788, 950
AsuC2I	CCSGG	1 cut(s)	551
AsuHPI	GGTGA	4 cut(s)	16, 229, 692, 970
AvaII	GGWCC	6 cut(s)	298, 398, 560, 638, 788, 950
BamHI	GGATCC	1 cut(s)	991
BauI	CACGAG	1 cut(s)	937
BbvI	GCAGC	2 cut(s)	10, 218
BccI	CCATC	4 cut(s)	86, 602, 772, 992
BciT130I	CCWGG	4 cut(s)	241, 558, 948, 960
BcnI	CCSGG	1 cut(s)	551
BcoDI	GTCTC	1 cut(s)	738
BfaI	CTAG	1 cut(s)	812
BfmI	CTRYAG	2 cut(s)	513, 903
BisI	GCNGC	2 cut(s)	24, 207
BlsI	GCNGC	2 cut(s)	25, 208
Bme1390I	CCNGG	5 cut(s)	241, 551, 558, 948, 960
Bme18I	GGWCC	6 cut(s)	298, 398, 560, 638, 788, 950
BmgT120I	GGNCC	7 cut(s)	298, 398, 560, 638, 693, 788, 950
BmiI	GGNNCC	4 cut(s)	555, 945, 952, 993
BmrFI	CCNGG	5 cut(s)	241, 551, 558, 948, 960
BpmI	CTGGAG	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	551
BsaAI	YACGTR	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	240, 388
BsaWI	WCCGGW	2 cut(s)	300, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	569, 959
Bse1I	ACTGG	1 cut(s)	1050
BseBI	CCWGG	4 cut(s)	241, 558, 948, 960
BseDI	CCNNGG	2 cut(s)	240, 388
BseGI	GGATG	2 cut(s)	339, 892
BseLI	CCNNNNNNNGG	2 cut(s)	569, 959
BseMII	CTCAG	1 cut(s)	881
BseNI	ACTGG	1 cut(s)	1050
BseRI	GAGGAG	2 cut(s)	57, 77
BseXI	GCAGC	2 cut(s)	10, 218
Bsh1236I	CGCG	1 cut(s)	983
Bsh1285I	CGRYCG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	695
BsiEI	CGRYCG	1 cut(s)	495
BsiSI	CCGG	3 cut(s)	301, 401, 550
BslFI	GGGAC	2 cut(s)	895, 936
BslI	CCNNNNNNNGG	2 cut(s)	569, 959
BsmAI	GTCTC	1 cut(s)	738
BsmFI	GGGAC	2 cut(s)	895, 936
BsmI	GAATGC	2 cut(s)	270, 590
BsnI	GGCC	1 cut(s)	695
Bsp1407I	TGTACA	1 cut(s)	894
Bsp143I	GATC	6 cut(s)	9, 229, 601, 682, 975, 991
BspACI	CCGC	2 cut(s)	491, 981
BspANI	GGCC	1 cut(s)	695
BspCNI	CTCAG	1 cut(s)	880
BspFNI	CGCG	1 cut(s)	983
BspLI	GGNNCC	4 cut(s)	555, 945, 952, 993
BspMAI	CTGCAG	1 cut(s)	907
BspPI	GGATC	4 cut(s)	17, 596, 986, 999
BsrGI	TGTACA	1 cut(s)	894
BsrI	ACTGG	1 cut(s)	1050
BssECI	CCNNGG	2 cut(s)	240, 388
BssMI	GATC	6 cut(s)	9, 229, 601, 682, 975, 991
BssNAI	GTATAC	1 cut(s)	375
BssSI	CACGAG	1 cut(s)	937
BssT1I	CCWWGG	1 cut(s)	388
Bst1107I	GTATAC	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	937
Bst2UI	CCWGG	4 cut(s)	241, 558, 948, 960
Bst4CI	ACNGT	3 cut(s)	179, 514, 583
Bst6I	CTCTTC	1 cut(s)	360
BstAUI	TGTACA	1 cut(s)	894
BstBAI	YACGTR	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	867
BstENI	CCTNNNNNAGG	1 cut(s)	567
BstF5I	GGATG	2 cut(s)	339, 892
BstFNI	CGCG	1 cut(s)	983
BstKTI	GATC	6 cut(s)	12, 232, 604, 685, 978, 994
BstMAI	GTCTC	1 cut(s)	738
BstMBI	GATC	6 cut(s)	9, 229, 601, 682, 975, 991
BstMCI	CGRYCG	1 cut(s)	495
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 872
BstNI	CCWGG	4 cut(s)	241, 558, 948, 960
BstSCI	CCNGG	5 cut(s)	239, 549, 556, 946, 958
BstSFI	CTRYAG	2 cut(s)	513, 903
BstSNI	TACGTA	1 cut(s)	347
BstUI	CGCG	1 cut(s)	983
BstV1I	GCAGC	2 cut(s)	10, 218
BstX2I	RGATCY	2 cut(s)	601, 991
BstYI	RGATCY	2 cut(s)	601, 991
BstZ17I	GTATAC	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	695
BtsCI	GGATG	2 cut(s)	339, 892
BtsIMutI	CAGTG	1 cut(s)	837
Cac8I	GCNNGC	1 cut(s)	52
Cfr13I	GGNCC	7 cut(s)	298, 398, 560, 638, 693, 788, 950
CsiI	ACCWGGT	1 cut(s)	958
Csp6I	GTAC	3 cut(s)	757, 763, 895
CviAII	CATG	3 cut(s)	116, 272, 775
CviQI	GTAC	3 cut(s)	757, 763, 895
DdeI	CTNAG	1 cut(s)	867
DpnI	GATC	6 cut(s)	11, 231, 603, 684, 977, 993
DpnII	GATC	6 cut(s)	9, 229, 601, 682, 975, 991
DraIII	CACNNNGTG	2 cut(s)	418, 984
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco105I	TACGTA	1 cut(s)	347
Eco130I	CCWWGG	1 cut(s)	388
Eco47I	GGWCC	6 cut(s)	298, 398, 560, 638, 788, 950
EcoNI	CCTNNNNNAGG	1 cut(s)	567
EcoO109I	RGGNCCY	1 cut(s)	638
EcoRII	CCWGG	4 cut(s)	239, 556, 946, 958
EcoT14I	CCWWGG	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	3 cut(s)	119, 275, 778
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FaqI	GGGAC	2 cut(s)	895, 936
FatI	CATG	3 cut(s)	115, 271, 774
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	2 cut(s)	24, 207
FokI	GGATG	2 cut(s)	346, 899
Fsp4HI	GCNGC	2 cut(s)	24, 207
FspBI	CTAG	1 cut(s)	812
GluI	GCNGC	2 cut(s)	24, 207
GsuI	CTGGAG	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	695
HapII	CCGG	3 cut(s)	301, 401, 550
Hin1II	CATG	3 cut(s)	119, 275, 778
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	2 cut(s)	155, 338
HinfI	GANTC	3 cut(s)	62, 194, 407
HpaII	CCGG	3 cut(s)	301, 401, 550
HphI	GGTGA	4 cut(s)	16, 229, 692, 970
Hpy166II	GTNNAC	6 cut(s)	175, 375, 448, 765, 895, 1021
Hpy188I	TCNGA	2 cut(s)	61, 870
Hpy188III	TCNNGA	7 cut(s)	93, 605, 686, 791, 937, 989, 995
Hpy8I	GTNNAC	6 cut(s)	175, 375, 448, 765, 895, 1021
HpyAV	CCTTC	2 cut(s)	51, 706
HpyCH4III	ACNGT	3 cut(s)	179, 514, 583
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	1 cut(s)	905
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 872
HpyF3I	CTNAG	1 cut(s)	867
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	3 cut(s)	119, 275, 778
Kzo9I	GATC	6 cut(s)	9, 229, 601, 682, 975, 991
LmnI	GCTCC	3 cut(s)	553, 675, 943
Lsp1109I	GCAGC	2 cut(s)	10, 218
MabI	ACCWGGT	1 cut(s)	958
MaeI	CTAG	1 cut(s)	812
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	3 cut(s)	476, 611, 835
MalI	GATC	6 cut(s)	11, 231, 603, 684, 977, 993
MboI	GATC	6 cut(s)	9, 229, 601, 682, 975, 991
MboII	GAAGA	8 cut(s)	177, 224, 273, 377, 416, 611, 806, 985
MflI	RGATCY	2 cut(s)	601, 991
MluCI	AATT	3 cut(s)	436, 617, 800
MmeI	TCCRAC	1 cut(s)	983
MnlI	CCTC	9 cut(s)	40, 56, 78, 95, 98, 132, 629, 663, 933
MseI	TTAA	2 cut(s)	143, 246
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	3 cut(s)	301, 401, 550
MspR9I	CCNGG	5 cut(s)	241, 551, 558, 948, 960
Mva1269I	GAATGC	2 cut(s)	270, 590
MvaI	CCWGG	4 cut(s)	241, 558, 948, 960
MvnI	CGCG	1 cut(s)	983
MwoI	GCNNNNNNNGC	2 cut(s)	212, 872
NciI	CCSGG	1 cut(s)	551
NdeII	GATC	6 cut(s)	9, 229, 601, 682, 975, 991
NlaIII	CATG	3 cut(s)	119, 275, 778
NlaIV	GGNNCC	4 cut(s)	555, 945, 952, 993
NmuCI	GTSAC	2 cut(s)	476, 835
PctI	GAATGC	2 cut(s)	270, 590
PfeI	GAWTC	3 cut(s)	62, 194, 407
PkrI	GCNGC	2 cut(s)	25, 208
Ppu21I	YACGTR	1 cut(s)	347
PpuMI	RGGWCCY	1 cut(s)	638
PsiI	TTATAA	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	638
Psp6I	CCWGG	4 cut(s)	239, 556, 946, 958
PspGI	CCWGG	4 cut(s)	239, 556, 946, 958
PspN4I	GGNNCC	4 cut(s)	555, 945, 952, 993
PspPI	GGNCC	7 cut(s)	298, 398, 560, 638, 693, 788, 950
PspPPI	RGGWCCY	1 cut(s)	638
PstI	CTGCAG	1 cut(s)	907
PsuI	RGATCY	2 cut(s)	601, 991
RsaI	GTAC	3 cut(s)	758, 764, 896
RsaNI	GTAC	3 cut(s)	757, 763, 895
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	143, 246
SatI	GCNGC	2 cut(s)	24, 207
Sau3AI	GATC	6 cut(s)	9, 229, 601, 682, 975, 991
Sau96I	GGNCC	7 cut(s)	298, 398, 560, 638, 693, 788, 950
ScrFI	CCNGG	5 cut(s)	241, 551, 558, 948, 960
SexAI	ACCWGGT	1 cut(s)	958
SfcI	CTRYAG	2 cut(s)	513, 903
SinI	GGWCC	6 cut(s)	298, 398, 560, 638, 788, 950
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
SnaBI	TACGTA	1 cut(s)	347
Sse9I	AATT	3 cut(s)	436, 617, 800
SsiI	CCGC	2 cut(s)	491, 981
SspMI	CTAG	1 cut(s)	812
StyD4I	CCNGG	5 cut(s)	239, 549, 556, 946, 958
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	3 cut(s)	179, 514, 583
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	3 cut(s)	37, 495, 687
TasI	AATT	3 cut(s)	436, 617, 800
TatI	WGTACW	3 cut(s)	756, 762, 894
TfiI	GAWTC	3 cut(s)	62, 194, 407
Tru1I	TTAA	2 cut(s)	143, 246
Tru9I	TTAA	2 cut(s)	143, 246
TscAI	CASTG	1 cut(s)	844
TseFI	GTSAC	2 cut(s)	476, 835
TseI	GCWGC	2 cut(s)	23, 206
Tsp45I	GTSAC	2 cut(s)	476, 835
TspDTI	ATGAA	3 cut(s)	260, 350, 583
TspGWI	ACGGA	2 cut(s)	662, 899
TspRI	CASTG	1 cut(s)	844
VpaK11BI	GGWCC	6 cut(s)	298, 398, 560, 638, 788, 950
XagI	CCTNNNNNAGG	1 cut(s)	567
XapI	RAATTY	2 cut(s)	617, 800
XmiI	GTMKAC	1 cut(s)	374
XspI	CTAG	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.