Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004018

Physical Location & Seq

Genomic Coordinates Forward (+)

37929390 .. 37933424

Gene Structure 4035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G449600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTCATCTTCATCGGCTACCCTGAATCTCTTAAGACCTTCTCTTGCTCCACCACCGTCCTCCTTGAGGTTTTGTGATGTGAGAAATTCTGCTGCTTCATATTGTACATCTCGAAGGCTCGCTCTCTTTCACCTCGGCTTTGCTCTACCTCAGTCACAACTATTAGGTGCAAAAGCATCTGAGTTGCTAAGAGGAGAGAGAAACACACTAGAGGCTGCCCCAGTTGCAAATTTGGCACAAGCAGGCACCGCTATCACCAAGGAAAATGCTTTGGAGTGGGTAAAAAATGACAAACGAAGAATGCTTCATGTTGTCTATCGTGTTGGGGACTTGGACAAGACTATAAAATTCTATACCGAATGTTTGGGGATGAAGCTGTTGAGAAGGCGTGACATACCAGAGGAGCAATATTCAAATGCTTTTCTCGGATATGGGCCAGAAGATTCCAATTTTGTTGTTGAACTTACATACAGTAAGTCATTTTTGTATTATGGAGTAGACAAGTACAACATTGGGACTGGTTTTGGCCATTTTGGTATTGATGTTGAAGATGTCAGCAAATCAGTGGAACTGATAAAGGCAAAGGGAGGGAAAGTTACAAGGGAACCTGGCCCTGCTAAAAGTGGCAGTACAATAATTGCTTCTGTTGAGGATCCTGATGGCTATACGTTTGAGCTTTTGGAGAGAGGGCTTTCACCTGAGCCCTTATGTCAAGTGATGCTTCGTGTAGGCGATCTTGACCGTGCTATTAATTTTTATAAGAAGGCTTTTGGGATGGAACTTCTTCGCAAGAGGGATTATCCTGAGTACAAGTATACATACGCCCTGATGGGCTATGGTCCTGAAGATAAGAATCCAGTGCTTGAACTGACGTACAACTATGGGATCACAGATTATGACAAAGGAAATGGTTATGCACAGATCGCAATAGGCACAGATGATGTTTACAAAAGCGCAGAAGCAATCAAACTCTATGGAGGGAAGATTGTTCTTGAACCTGGGCCTTTGCCAGGTATCAACACAAAGATAACTGCTTGCCTTGACCCTGATGGCTGGAAATCGGTCTTTGTTGATAATGTTGATTTTATGAAGGAATTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

368

Amino Acids

40.77

Weight (kDa)

5.86

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67280 AT1G67280
fragaria_vesca	FvH4_1g05730 FvH4_1g05730 FvH4_2g35710 FvH4_2g35710
malus_domestica	MD02G1058400.v1.1 MD15G1094500.v1.1 MD15G1192700.v1.1
prunus_persica	Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.7G224600_v2.0.a1 Prupe.7G224600_v2.0.a1
pyrus_communis	pycom15g08730
rosa_chinensis	RchiOBHm_Chr2g0091371 RchiOBHm_Chr6g0306071
rosa_laevigata	RLG00000010826 RLG00000016218
rosa_multiflora	Rmu_sc0025018.1_g000002
rosa_roxburghii	Rroxscaffold_2G00150140 Rroxscaffold_7G00162080
rosa_rugosa	Rorug02G0017000 Rorug06G0346800
rosa_samantha	Rh2BG061200 Rh2CG063300 Rh6AG458900 Rh6BG441900 Rh6CG473400 Rh6DG459700
rosa_wichuraiana	Rw2G004790 Rw6G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	759
AccB1I	GGYRCC	1 cut(s)	245
AccI	GTMKAC	2 cut(s)	498, 815
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	3 cut(s)	647, 660, 893
AcoI	YGGCCR	1 cut(s)	526
AcsI	RAATTY	3 cut(s)	85, 229, 347
AcuI	CTGAAG	1 cut(s)	864
AfaI	GTAC	5 cut(s)	106, 506, 631, 809, 875
AfiI	CCNNNNNNNGG	2 cut(s)	66, 1010
AflII	CTTAAG	1 cut(s)	31
AgsI	TTSAA	5 cut(s)	414, 461, 548, 866, 995
AjnI	CCWGG	3 cut(s)	607, 997, 1009
AluBI	AGCT	2 cut(s)	376, 676
AluI	AGCT	2 cut(s)	376, 676
AlwI	GGATC	3 cut(s)	647, 660, 893
AoxI	GGCC	4 cut(s)	434, 526, 610, 1001
ApeKI	GCWGC	2 cut(s)	92, 215
ApoI	RAATTY	3 cut(s)	85, 229, 347
AseI	ATTAAT	1 cut(s)	750
Asp700I	GAANNNNTTC	1 cut(s)	783
AspLEI	GCGC	1 cut(s)	956
AspS9I	GGNCC	4 cut(s)	434, 611, 839, 1001
AsuHPI	GGTGA	3 cut(s)	122, 247, 687
AvaII	GGWCC	1 cut(s)	839
BalI	TGGCCA	1 cut(s)	528
BamHI	GGATCC	1 cut(s)	652
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	705
BbvI	GCAGC	2 cut(s)	79, 202
BccI	CCATC	4 cut(s)	653, 769, 823, 1043
BciT130I	CCWGG	3 cut(s)	609, 999, 1011
BfaI	CTAG	1 cut(s)	209
BfrI	CTTAAG	1 cut(s)	31
BisI	GCNGC	2 cut(s)	93, 216
BlsI	GCNGC	2 cut(s)	94, 217
Bme1390I	CCNGG	3 cut(s)	609, 999, 1011
Bme18I	GGWCC	1 cut(s)	839
BmgT120I	GGNCC	4 cut(s)	434, 611, 839, 1001
BmiI	GGNNCC	3 cut(s)	247, 606, 654
BmrFI	CCNGG	3 cut(s)	609, 999, 1011
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	2 cut(s)	185, 708
BmuI	ACTGGG	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	85
BsaBI	GATNNNNATC	1 cut(s)	852
BsaJI	CCNNGG	3 cut(s)	133, 258, 998
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 1010
Bse1I	ACTGG	3 cut(s)	221, 523, 857
Bse8I	GATNNNNATC	1 cut(s)	852
BseBI	CCWGG	3 cut(s)	609, 999, 1011
BseDI	CCNNGG	3 cut(s)	133, 258, 998
BseGI	GGATG	2 cut(s)	375, 780
BseJI	GATNNNNATC	1 cut(s)	852
BseLI	CCNNNNNNNGG	2 cut(s)	66, 1010
BseMII	CTCAG	4 cut(s)	164, 171, 690, 795
BseNI	ACTGG	3 cut(s)	221, 523, 857
BseRI	GAGGAG	2 cut(s)	207, 416
BseXI	GCAGC	2 cut(s)	79, 202
BshFI	GGCC	4 cut(s)	436, 528, 612, 1003
BshNI	GGYRCC	1 cut(s)	245
BslFI	GGGAC	2 cut(s)	341, 529
BslI	CCNNNNNNNGG	2 cut(s)	66, 1010
BsmFI	GGGAC	2 cut(s)	341, 529
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	4 cut(s)	436, 528, 612, 1003
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp1407I	TGTACA	1 cut(s)	104
Bsp143I	GATC	4 cut(s)	652, 733, 885, 921
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	4 cut(s)	436, 528, 612, 1003
BspCNI	CTCAG	4 cut(s)	163, 172, 691, 796
BspLI	GGNNCC	3 cut(s)	247, 606, 654
BspPI	GGATC	3 cut(s)	647, 660, 893
BspT107I	GGYRCC	1 cut(s)	245
BspTI	CTTAAG	1 cut(s)	31
BsrGI	TGTACA	1 cut(s)	104
BsrI	ACTGG	3 cut(s)	221, 523, 857
BssECI	CCNNGG	3 cut(s)	133, 258, 998
BssMI	GATC	4 cut(s)	652, 733, 885, 921
BssNAI	GTATAC	1 cut(s)	816
BssT1I	CCWWGG	1 cut(s)	258
Bst1107I	GTATAC	1 cut(s)	816
Bst2UI	CCWGG	3 cut(s)	609, 999, 1011
Bst4CI	ACNGT	3 cut(s)	57, 473, 743
BstAFI	CTTAAG	1 cut(s)	31
BstAUI	TGTACA	1 cut(s)	104
BstC8I	GCNNGC	3 cut(s)	120, 244, 1036
BstDEI	CTNAG	5 cut(s)	150, 180, 188, 699, 804
BstENI	CCTNNNNNAGG	2 cut(s)	64, 1008
BstF5I	GGATG	2 cut(s)	375, 780
BstHHI	GCGC	1 cut(s)	956
BstKTI	GATC	4 cut(s)	655, 736, 888, 924
BstMBI	GATC	4 cut(s)	652, 733, 885, 921
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 233, 248, 923
BstNI	CCWGG	3 cut(s)	609, 999, 1011
BstSCI	CCNGG	3 cut(s)	607, 997, 1009
BstV1I	GCAGC	2 cut(s)	79, 202
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BstZ17I	GTATAC	1 cut(s)	816
BsuRI	GGCC	4 cut(s)	436, 528, 612, 1003
BtsCI	GGATG	2 cut(s)	375, 780
BtsIMutI	CAGTG	2 cut(s)	570, 864
Cac8I	GCNNGC	3 cut(s)	120, 244, 1036
CfoI	GCGC	1 cut(s)	956
Cfr13I	GGNCC	4 cut(s)	434, 611, 839, 1001
Csp6I	GTAC	5 cut(s)	105, 505, 630, 808, 874
CviAII	CATG	1 cut(s)	308
CviQI	GTAC	5 cut(s)	105, 505, 630, 808, 874
DdeI	CTNAG	5 cut(s)	150, 180, 188, 699, 804
DpnI	GATC	4 cut(s)	654, 735, 887, 923
DpnII	GATC	4 cut(s)	652, 733, 885, 921
EaeI	YGGCCR	1 cut(s)	526
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	705
Eco47I	GGWCC	1 cut(s)	839
Eco57I	CTGAAG	1 cut(s)	864
EcoNI	CCTNNNNNAGG	2 cut(s)	64, 1008
EcoRII	CCWGG	3 cut(s)	607, 997, 1009
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	1 cut(s)	311
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FaqI	GGGAC	2 cut(s)	341, 529
FatI	CATG	1 cut(s)	307
FblI	GTMKAC	2 cut(s)	498, 815
Fnu4HI	GCNGC	2 cut(s)	93, 216
FokI	GGATG	2 cut(s)	382, 787
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	2 cut(s)	93, 216
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	1 cut(s)	955
GluI	GCNGC	2 cut(s)	93, 216
HaeIII	GGCC	4 cut(s)	436, 528, 612, 1003
HhaI	GCGC	1 cut(s)	956
Hin1II	CATG	1 cut(s)	311
Hin6I	GCGC	1 cut(s)	954
HinP1I	GCGC	1 cut(s)	954
HinfI	GANTC	3 cut(s)	25, 443, 853
HphI	GGTGA	3 cut(s)	122, 247, 687
Hpy166II	GTNNAC	3 cut(s)	499, 816, 946
Hpy188I	TCNGA	2 cut(s)	181, 428
Hpy188III	TCNNGA	6 cut(s)	111, 656, 737, 803, 842, 992
Hpy8I	GTNNAC	3 cut(s)	499, 816, 946
HpyAV	CCTTC	5 cut(s)	48, 108, 378, 757, 1084
HpyCH4III	ACNGT	3 cut(s)	57, 473, 743
HpyCH4IV	ACGT	2 cut(s)	668, 872
HpyCH4V	TGCA	3 cut(s)	170, 227, 917
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 233, 248, 923
HpyF3I	CTNAG	5 cut(s)	150, 180, 188, 699, 804
HpySE526I	ACGT	2 cut(s)	668, 872
Hsp92II	CATG	1 cut(s)	311
HspAI	GCGC	1 cut(s)	954
Kzo9I	GATC	4 cut(s)	652, 733, 885, 921
LmnI	GCTCC	2 cut(s)	52, 403
Lsp1109I	GCAGC	2 cut(s)	79, 202
LweI	GCATC	2 cut(s)	185, 708
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	2 cut(s)	668, 872
MaeIII	GTNAC	3 cut(s)	153, 389, 595
MalI	GATC	4 cut(s)	654, 735, 887, 923
MboI	GATC	4 cut(s)	652, 733, 885, 921
MboII	GAAGA	6 cut(s)	309, 452, 560, 776, 857, 994
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	1 cut(s)	705
MlsI	TGGCCA	1 cut(s)	528
MluCI	AATT	7 cut(s)	85, 229, 347, 448, 636, 751, 1094
MluNI	TGGCCA	1 cut(s)	528
Mox20I	TGGCCA	1 cut(s)	528
MroXI	GAANNNNTTC	1 cut(s)	783
MscI	TGGCCA	1 cut(s)	528
MseI	TTAA	2 cut(s)	32, 750
Msp20I	TGGCCA	1 cut(s)	528
MspCI	CTTAAG	1 cut(s)	31
MspR9I	CCNGG	3 cut(s)	609, 999, 1011
Mva1269I	GAATGC	1 cut(s)	306
MvaI	CCWGG	3 cut(s)	609, 999, 1011
MwoI	GCNNNNNNNGC	4 cut(s)	224, 233, 248, 923
NdeII	GATC	4 cut(s)	652, 733, 885, 921
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	3 cut(s)	247, 606, 654
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	2 cut(s)	153, 389
PctI	GAATGC	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	783
PfeI	GAWTC	3 cut(s)	25, 443, 853
PkrI	GCNGC	2 cut(s)	94, 217
PshBI	ATTAAT	1 cut(s)	750
PsiI	TTATAA	1 cut(s)	759
Psp6I	CCWGG	3 cut(s)	607, 997, 1009
PspGI	CCWGG	3 cut(s)	607, 997, 1009
PspN4I	GGNNCC	3 cut(s)	247, 606, 654
PspPI	GGNCC	4 cut(s)	434, 611, 839, 1001
PsuI	RGATCY	1 cut(s)	652
RsaI	GTAC	5 cut(s)	106, 506, 631, 809, 875
RsaNI	GTAC	5 cut(s)	105, 505, 630, 808, 874
SaqAI	TTAA	2 cut(s)	32, 750
SatI	GCNGC	2 cut(s)	93, 216
Sau3AI	GATC	4 cut(s)	652, 733, 885, 921
Sau96I	GGNCC	4 cut(s)	434, 611, 839, 1001
ScrFI	CCNGG	3 cut(s)	609, 999, 1011
SduI	GDGCHC	1 cut(s)	705
SfaNI	GCATC	2 cut(s)	185, 708
SinI	GGWCC	1 cut(s)	839
SmlI	CTYRAG	2 cut(s)	31, 64
SmoI	CTYRAG	2 cut(s)	31, 64
Sse9I	AATT	7 cut(s)	85, 229, 347, 448, 636, 751, 1094
SsiI	CCGC	1 cut(s)	249
SspI	AATATT	1 cut(s)	410
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	3 cut(s)	607, 997, 1009
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	3 cut(s)	57, 473, 743
TaiI	ACGT	2 cut(s)	671, 875
TaqI	TCGA	1 cut(s)	112
TaqII	GACCGA	1 cut(s)	1051
TasI	AATT	7 cut(s)	85, 229, 347, 448, 636, 751, 1094
TatI	WGTACW	4 cut(s)	104, 504, 629, 807
TfiI	GAWTC	3 cut(s)	25, 443, 853
Tru1I	TTAA	2 cut(s)	32, 750
Tru9I	TTAA	2 cut(s)	32, 750
TscAI	CASTG	2 cut(s)	570, 864
TseFI	GTSAC	2 cut(s)	153, 389
TseI	GCWGC	2 cut(s)	92, 215
Tsp45I	GTSAC	2 cut(s)	153, 389
TspDTI	ATGAA	4 cut(s)	87, 296, 386, 1103
TspRI	CASTG	2 cut(s)	570, 864
Vha464I	CTTAAG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	839
VspI	ATTAAT	1 cut(s)	750
XagI	CCTNNNNNAGG	2 cut(s)	64, 1008
XapI	RAATTY	3 cut(s)	85, 229, 347
XmiI	GTMKAC	2 cut(s)	498, 815
XmnI	GAANNNNTTC	1 cut(s)	783
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.