Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004018

Physical Location & Seq

Genomic Coordinates Forward (+)

4718679 .. 4722075

Gene Structure 3397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCGTCTTTATCGGTCACTCTCAATCTCTTAAGGCCTTGTTCCATTGCTCCTAAGCCATCTCCGTCCTTGAGATTCTGTGATGTCCGAAACTCTGCTTCTTCCTATTGTTCTACTTCTCGGAGACTCGCTCTCTTTCACCTTGGCTCTGCAATGAAACTTTATCGGCAATGTGCAATGTATGCGTGTAATGTTGAATATGTGATTTCATGTGATGGTGCAAAAGCATCTCAATTGCTGAGAGGAGAGGGGAAACCTGTAGAGGCTGCCCCAATTGCTGATTTGGCACAAGCAGGTGCTGCAATTGCTCAGGAAGATGCATTGGAATGGGTAAAAAATGATAAACGAAGAATGCTTCATGTCGTCTATCGTGTTGGGGACTTGGACAAGACTATAAAATTCTACACAGAGTGTTTGGGGATGAAGCTGTTGAGAAAACGTGACATACCCGAGGAGCAATATTCGAATGCTTTTCTTGGATATGGGCCAGAAGATTCCAACTTTACTGCTGAACTTACATATAGTAAGTCCTTATCTGTTGCCAAAACAGTGGAACTTATAAAGGCAAAGGGAGGGAAAGTTACCAGGGAACCTGGTCCTGCCAATGGTGGCAGTACAATAATTGCTCTTATTGAGGATCCTGATGGTTATCCGTTTGAGCTTTTAGAGAAATGGCCTACACCAGAGCCCTTTTCACAAGTGATGCTTCGTGTAGGTGATCTTGACCGTGCTATTAACTTTTATACGAAGTATACAGTAGCCATGTTGGGATATGGTACTGAAGATAACAGTCCAGTGCTTGAACTGACATATAACTATGGGATCACTGATTATGATAAAGGAAATGGTTATGCTCAGATTGCAATAGGCACAGACAATGTTTATAAAAGTGCAGAAGCAGTTAGACTTTCTGGAGGGAAGATTATTCTTGAACCTGGTCCCTTGCCAGGTATCAACACCAAGATAACTGCTTGCTTAGATCCCGATGGCTGGAAATCGGTTTTTGTTGATAATATTGATTTTCTGAAGGAATTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

346

Amino Acids

38.0

Weight (kDa)

5.52

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	118 - 221	1.5e-15	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase	PF00903	232 - 332	9.1e-11	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67280 AT1G67280
fragaria_vesca	FvH4_1g05730 FvH4_1g05730 FvH4_2g35710 FvH4_2g35710
malus_domestica	MD02G1058400.v1.1 MD15G1094500.v1.1 MD15G1192700.v1.1
prunus_persica	Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.7G224600_v2.0.a1 Prupe.7G224600_v2.0.a1
pyrus_communis	pycom15g08730
rosa_chinensis	RchiOBHm_Chr2g0091371 RchiOBHm_Chr6g0306071
rosa_laevigata	RLG00000010826 RLG00000016218
rosa_multiflora	Rmu_sc0025018.1_g000002
rosa_roxburghii	Rroxscaffold_2G00150140 Rroxscaffold_7G00162080
rosa_rugosa	Rorug02G0017000 Rorug06G0346800
rosa_samantha	Rh2BG061200 Rh2CG063300 Rh6AG458900 Rh6BG441900 Rh6CG473400 Rh6DG459700
rosa_wichuraiana	Rw2G004790 Rw6G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	560, 885
AarI	CACCTGC	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	752
AclWI	GGATC	4 cut(s)	632, 645, 830, 974
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	1 cut(s)	801
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	411
AfaI	GTAC	2 cut(s)	616, 778
AfiI	CCNNNNNNNGG	3 cut(s)	605, 947, 990
AflII	CTTAAG	1 cut(s)	31
AgsI	TTSAA	3 cut(s)	197, 803, 932
AjnI	CCWGG	4 cut(s)	584, 592, 934, 946
AluBI	AGCT	2 cut(s)	427, 661
AluI	AGCT	2 cut(s)	427, 661
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	4 cut(s)	632, 645, 830, 974
AlwNI	CAGNNNCTG	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	3 cut(s)	35, 485, 674
ApeKI	GCWGC	2 cut(s)	266, 299
ApoI	RAATTY	1 cut(s)	398
AspS9I	GGNCC	3 cut(s)	485, 596, 938
AsuHPI	GGTGA	2 cut(s)	131, 728
AsuII	TTCGAA	1 cut(s)	464
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	2 cut(s)	596, 938
BamHI	GGATCC	1 cut(s)	637
BanII	GRGCYC	1 cut(s)	690
BbvI	GCAGC	2 cut(s)	253, 286
BccI	CCATC	4 cut(s)	67, 209, 638, 980
BciT130I	CCWGG	4 cut(s)	586, 594, 936, 948
BcoDI	GTCTC	1 cut(s)	118
BfmI	CTRYAG	1 cut(s)	258
BfrI	CTTAAG	1 cut(s)	31
BfuAI	ACCTGC	1 cut(s)	284
BisI	GCNGC	2 cut(s)	267, 300
BlsI	GCNGC	2 cut(s)	268, 301
Bme1390I	CCNGG	4 cut(s)	586, 594, 936, 948
Bme18I	GGWCC	2 cut(s)	596, 938
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	3 cut(s)	485, 596, 938
BmiI	GGNNCC	3 cut(s)	591, 639, 940
BmrFI	CCNGG	4 cut(s)	586, 594, 936, 948
BmsI	GCATC	3 cut(s)	236, 307, 693
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
BpmI	CTGGAG	1 cut(s)	933
Bpu10I	CCTNAGC	2 cut(s)	54, 309
Bpu14I	TTCGAA	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	648
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	142, 450, 585
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bsc4I	CCNNNNNNNGG	3 cut(s)	605, 947, 990
Bse1I	ACTGG	1 cut(s)	794
Bse3DI	GCAATG	4 cut(s)	45, 159, 176, 183
Bse8I	GATNNNNATC	1 cut(s)	648
BseBI	CCWGG	4 cut(s)	586, 594, 936, 948
BseDI	CCNNGG	3 cut(s)	142, 450, 585
BseGI	GGATG	1 cut(s)	426
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	3 cut(s)	605, 947, 990
BseMI	GCAATG	4 cut(s)	45, 159, 176, 183
BseMII	CTCAG	3 cut(s)	230, 323, 869
BseNI	ACTGG	1 cut(s)	794
BseRI	GAGGAG	2 cut(s)	258, 467
BseXI	GCAGC	2 cut(s)	253, 286
BsgI	GTGCAG	1 cut(s)	912
BshFI	GGCC	3 cut(s)	37, 487, 676
BsiHKCI	CYCGRG	1 cut(s)	449
BslFI	GGGAC	2 cut(s)	392, 924
BslI	CCNNNNNNNGG	3 cut(s)	605, 947, 990
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	2 cut(s)	392, 924
BsmI	GAATGC	2 cut(s)	357, 472
BsnI	GGCC	3 cut(s)	37, 487, 676
BsoBI	CYCGRG	1 cut(s)	449
Bsp119I	TTCGAA	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp143I	GATC	4 cut(s)	637, 718, 822, 979
BspANI	GGCC	3 cut(s)	37, 487, 676
BspCNI	CTCAG	3 cut(s)	231, 322, 868
BspLI	GGNNCC	3 cut(s)	591, 639, 940
BspMI	ACCTGC	1 cut(s)	284
BspPI	GGATC	4 cut(s)	632, 645, 830, 974
BspT104I	TTCGAA	1 cut(s)	464
BspTI	CTTAAG	1 cut(s)	31
BsrDI	GCAATG	4 cut(s)	45, 159, 176, 183
BsrI	ACTGG	1 cut(s)	794
BssECI	CCNNGG	3 cut(s)	142, 450, 585
BssMI	GATC	4 cut(s)	637, 718, 822, 979
BssNAI	GTATAC	1 cut(s)	753
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	142
Bst1107I	GTATAC	1 cut(s)	753
Bst2UI	CCWGG	4 cut(s)	586, 594, 936, 948
Bst4CI	ACNGT	4 cut(s)	550, 728, 757, 791
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	31
BstAPI	GCANNNNNTGC	2 cut(s)	182, 299
BstBI	TTCGAA	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	973
BstDEI	CTNAG	5 cut(s)	54, 239, 309, 855, 976
BstF5I	GGATG	1 cut(s)	426
BstKTI	GATC	4 cut(s)	640, 721, 825, 982
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	4 cut(s)	637, 718, 822, 979
BstMWI	GCNNNNNNNGC	6 cut(s)	182, 275, 284, 299, 305, 860
BstNI	CCWGG	4 cut(s)	586, 594, 936, 948
BstSCI	CCNGG	4 cut(s)	584, 592, 934, 946
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	253, 286
BstX2I	RGATCY	2 cut(s)	637, 979
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	2 cut(s)	637, 979
BstZ17I	GTATAC	1 cut(s)	753
BsuRI	GGCC	3 cut(s)	37, 487, 676
BtsCI	GGATG	1 cut(s)	426
BtsIMutI	CAGTG	3 cut(s)	555, 801, 825
BveI	ACCTGC	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	973
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr13I	GGNCC	3 cut(s)	485, 596, 938
CsiI	ACCWGGT	2 cut(s)	592, 934
Csp6I	GTAC	2 cut(s)	615, 777
CviAII	CATG	3 cut(s)	210, 359, 763
CviQI	GTAC	2 cut(s)	615, 777
DdeI	CTNAG	5 cut(s)	54, 239, 309, 855, 976
DpnI	GATC	4 cut(s)	639, 720, 824, 981
DpnII	GATC	4 cut(s)	637, 718, 822, 979
DraIII	CACNNNGTG	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	142
Eco147I	AGGCCT	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	690
Eco47I	GGWCC	2 cut(s)	596, 938
Eco57I	CTGAAG	1 cut(s)	801
Eco88I	CYCGRG	1 cut(s)	449
EcoRII	CCWGG	4 cut(s)	584, 592, 934, 946
EcoT14I	CCWWGG	1 cut(s)	142
EcoT22I	ATGCAT	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	3 cut(s)	213, 362, 766
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FaqI	GGGAC	2 cut(s)	392, 924
FatI	CATG	3 cut(s)	209, 358, 762
FblI	GTMKAC	1 cut(s)	752
Fnu4HI	GCNGC	2 cut(s)	267, 300
FokI	GGATG	1 cut(s)	433
FriOI	GRGCYC	1 cut(s)	690
Fsp4HI	GCNGC	2 cut(s)	267, 300
GluI	GCNGC	2 cut(s)	267, 300
GsuI	CTGGAG	1 cut(s)	933
HaeIII	GGCC	3 cut(s)	37, 487, 676
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	213, 362, 766
HinfI	GANTC	3 cut(s)	75, 126, 494
HphI	GGTGA	2 cut(s)	131, 728
Hpy166II	GTNNAC	1 cut(s)	753
Hpy188I	TCNGA	4 cut(s)	89, 123, 858, 1026
Hpy188III	TCNNGA	6 cut(s)	311, 641, 722, 912, 929, 983
Hpy8I	GTNNAC	1 cut(s)	753
HpyAV	CCTTC	1 cut(s)	1021
HpyCH4III	ACNGT	4 cut(s)	550, 728, 757, 791
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	7 cut(s)	152, 176, 221, 302, 320, 863, 893
HpyF10VI	GCNNNNNNNGC	6 cut(s)	182, 275, 284, 299, 305, 860
HpyF3I	CTNAG	5 cut(s)	54, 239, 309, 855, 976
HpySE526I	ACGT	1 cut(s)	439
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	213, 362, 766
Kzo9I	GATC	4 cut(s)	637, 718, 822, 979
LmnI	GCTCC	2 cut(s)	55, 454
Lsp1109I	GCAGC	2 cut(s)	253, 286
LweI	GCATC	3 cut(s)	236, 307, 693
MabI	ACCWGGT	2 cut(s)	592, 934
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	3 cut(s)	16, 440, 580
MalI	GATC	4 cut(s)	639, 720, 824, 981
MboI	GATC	4 cut(s)	637, 718, 822, 979
MboII	GAAGA	6 cut(s)	93, 326, 360, 503, 794, 931
MfeI	CAATTG	3 cut(s)	233, 273, 303
MflI	RGATCY	2 cut(s)	637, 979
MhlI	GDGCHC	1 cut(s)	690
MluCI	AATT	6 cut(s)	233, 273, 303, 398, 621, 1031
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	7 cut(s)	236, 241, 256, 445, 566, 628, 908
Mph1103I	ATGCAT	1 cut(s)	322
MseI	TTAA	2 cut(s)	32, 735
MslI	CAYNNNNRTG	1 cut(s)	325
MspCI	CTTAAG	1 cut(s)	31
MspR9I	CCNGG	4 cut(s)	586, 594, 936, 948
MunI	CAATTG	3 cut(s)	233, 273, 303
Mva1269I	GAATGC	2 cut(s)	357, 472
MvaI	CCWGG	4 cut(s)	586, 594, 936, 948
MwoI	GCNNNNNNNGC	6 cut(s)	182, 275, 284, 299, 305, 860
NdeII	GATC	4 cut(s)	637, 718, 822, 979
NlaIII	CATG	3 cut(s)	213, 362, 766
NlaIV	GGNNCC	3 cut(s)	591, 639, 940
NmuCI	GTSAC	2 cut(s)	16, 440
NsiI	ATGCAT	1 cut(s)	322
NspV	TTCGAA	1 cut(s)	464
PaqCI	CACCTGC	1 cut(s)	284
PceI	AGGCCT	1 cut(s)	37
PctI	GAATGC	2 cut(s)	357, 472
PfeI	GAWTC	2 cut(s)	75, 494
PkrI	GCNGC	2 cut(s)	268, 301
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PsiI	TTATAA	2 cut(s)	560, 885
Psp6I	CCWGG	4 cut(s)	584, 592, 934, 946
PspGI	CCWGG	4 cut(s)	584, 592, 934, 946
PspN4I	GGNNCC	3 cut(s)	591, 639, 940
PspPI	GGNCC	3 cut(s)	485, 596, 938
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	2 cut(s)	637, 979
RsaI	GTAC	2 cut(s)	616, 778
RsaNI	GTAC	2 cut(s)	615, 777
RseI	CAYNNNNRTG	1 cut(s)	325
SaqAI	TTAA	2 cut(s)	32, 735
SatI	GCNGC	2 cut(s)	267, 300
Sau3AI	GATC	4 cut(s)	637, 718, 822, 979
Sau96I	GGNCC	3 cut(s)	485, 596, 938
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	4 cut(s)	586, 594, 936, 948
SduI	GDGCHC	1 cut(s)	690
SexAI	ACCWGGT	2 cut(s)	592, 934
SfaNI	GCATC	3 cut(s)	236, 307, 693
SfcI	CTRYAG	1 cut(s)	258
SfuI	TTCGAA	1 cut(s)	464
SinI	GGWCC	2 cut(s)	596, 938
SmiMI	CAYNNNNRTG	1 cut(s)	325
SmlI	CTYRAG	2 cut(s)	31, 70
SmoI	CTYRAG	2 cut(s)	31, 70
Sse9I	AATT	6 cut(s)	233, 273, 303, 398, 621, 1031
SseBI	AGGCCT	1 cut(s)	37
SspI	AATATT	2 cut(s)	461, 1015
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	4 cut(s)	584, 592, 934, 946
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	4 cut(s)	550, 728, 757, 791
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	1 cut(s)	464
TaqII	GACCGA	1 cut(s)	4
TasI	AATT	6 cut(s)	233, 273, 303, 398, 621, 1031
TatI	WGTACW	1 cut(s)	614
TfiI	GAWTC	2 cut(s)	75, 494
Tru1I	TTAA	2 cut(s)	32, 735
Tru9I	TTAA	2 cut(s)	32, 735
TscAI	CASTG	3 cut(s)	555, 801, 832
TseFI	GTSAC	2 cut(s)	16, 440
TseI	GCWGC	2 cut(s)	266, 299
Tsp45I	GTSAC	2 cut(s)	16, 440
TspDTI	ATGAA	4 cut(s)	170, 198, 347, 437
TspGWI	ACGGA	2 cut(s)	54, 642
TspRI	CASTG	3 cut(s)	555, 801, 832
Vha464I	CTTAAG	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	596, 938
XapI	RAATTY	1 cut(s)	398
XmiI	GTMKAC	1 cut(s)	752
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.