Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004018

Physical Location & Seq

Genomic Coordinates Reverse (-)

62933657 .. 62937439

Gene Structure 3783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG459700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAAGCTGTTGAGAAAACGTGACATACCCGAGGAGCAATATTCGAACGCTTTTCTTGGATATGGGCCGGAAGATTCCAACTTTACTGTTGAACTTACATATAATTATGGAGTGGACAAGTATGACATTGGGACTGGTTTTGGCCACTTTGGTATTGCAGTTGAAGATGTTGCCAAAACAGTGGAACTTATAAAGGCAAAGGGAGGGAAAGTTACCAGGGAACCTGGTCCTGCCAATGGTGGCAGTACAATAATTGCTCTTATTGAGGATCCTGATGGTTATCCGTTTGAGCTTTTAGAGAAATGGCCTACACCAGAGCCCTTTTCACAAGTGATGCTTCGTGTAGGTGATCTTGACCGTGCTATTAACTTTTATATGAAGGCTTTTGGAATGGAACTTCTCCGCACAAGAGATAATCCCGAATACAAGTATACAGTAGCCATGTTGGGATATGGTACTGAAGATAATAGTCCAGTGCTTGAACTGACATATAACTATGGGATCACTGATTATGATAAAGGAAATGGTTATGCTCAGATTGCAATAGGCACAGACGATGTTTATAAAAGTGCAGAAGCAGTTAGACTCTCTGGAGGGAAGATTATTCTTGAACCTGGTCCCTTGCCAGGTATCAACACCAAGATAACTGCTTGCTTAGACCCCGATGGCTGGAAATCGGTTTTTGTTGATAATATTGATTTTCTGAAGGAATTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

239

Amino Acids

26.51

Weight (kDa)

4.58

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	23 - 98	8.3e-14	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase	PF00903	109 - 225	4.1e-18	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67280 AT1G67280
fragaria_vesca	FvH4_1g05730 FvH4_1g05730 FvH4_2g35710 FvH4_2g35710
malus_domestica	MD02G1058400.v1.1 MD15G1094500.v1.1 MD15G1192700.v1.1
prunus_persica	Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.7G224600_v2.0.a1 Prupe.7G224600_v2.0.a1
pyrus_communis	pycom15g08730
rosa_chinensis	RchiOBHm_Chr2g0091371 RchiOBHm_Chr6g0306071
rosa_laevigata	RLG00000010826 RLG00000016218
rosa_multiflora	Rmu_sc0025018.1_g000002
rosa_roxburghii	Rroxscaffold_2G00150140 Rroxscaffold_7G00162080
rosa_rugosa	Rorug02G0017000 Rorug06G0346800
rosa_samantha	Rh2BG061200 Rh2CG063300 Rh6AG458900 Rh6BG441900 Rh6CG473400 Rh6DG459700
rosa_wichuraiana	Rw2G004790 Rw6G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	191, 564
AccI	GTMKAC	1 cut(s)	431
AciI	CCGC	1 cut(s)	403
AclWI	GGATC	3 cut(s)	263, 276, 509
AcoI	YGGCCR	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	2 cut(s)	247, 457
AfiI	CCNNNNNNNGG	3 cut(s)	236, 626, 669
AgsI	TTSAA	4 cut(s)	92, 164, 482, 611
AjnI	CCWGG	4 cut(s)	215, 223, 613, 625
AluBI	AGCT	2 cut(s)	7, 292
AluI	AGCT	2 cut(s)	7, 292
AlwI	GGATC	3 cut(s)	263, 276, 509
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	3 cut(s)	65, 142, 305
AspS9I	GGNCC	3 cut(s)	65, 227, 617
AsuHPI	GGTGA	1 cut(s)	359
AsuII	TTCGAA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	2 cut(s)	227, 617
BalI	TGGCCA	1 cut(s)	144
BamHI	GGATCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	321
BccI	CCATC	2 cut(s)	269, 659
BciT130I	CCWGG	4 cut(s)	217, 225, 615, 627
Bme1390I	CCNGG	4 cut(s)	217, 225, 615, 627
Bme18I	GGWCC	2 cut(s)	227, 617
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	3 cut(s)	65, 227, 617
BmiI	GGNNCC	3 cut(s)	222, 270, 619
BmrFI	CCNGG	4 cut(s)	217, 225, 615, 627
BmsI	GCATC	1 cut(s)	324
BpmI	CTGGAG	1 cut(s)	612
Bpu14I	TTCGAA	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	30, 216
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 626, 669
Bse1I	ACTGG	2 cut(s)	139, 473
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	4 cut(s)	217, 225, 615, 627
BseDI	CCNNGG	2 cut(s)	30, 216
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	3 cut(s)	236, 626, 669
BseMII	CTCAG	1 cut(s)	548
BseNI	ACTGG	2 cut(s)	139, 473
BseRI	GAGGAG	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	591
BshFI	GGCC	3 cut(s)	67, 144, 307
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	2 cut(s)	145, 603
BslI	CCNNNNNNNGG	3 cut(s)	236, 626, 669
BsmFI	GGGAC	2 cut(s)	145, 603
BsnI	GGCC	3 cut(s)	67, 144, 307
BsoBI	CYCGRG	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	268, 349, 501
BspACI	CCGC	1 cut(s)	403
BspANI	GGCC	3 cut(s)	67, 144, 307
BspCNI	CTCAG	1 cut(s)	547
BspLI	GGNNCC	3 cut(s)	222, 270, 619
BspPI	GGATC	3 cut(s)	263, 276, 509
BspT104I	TTCGAA	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	139, 473
BssECI	CCNNGG	2 cut(s)	30, 216
BssMI	GATC	3 cut(s)	268, 349, 501
BssNAI	GTATAC	1 cut(s)	432
Bst1107I	GTATAC	1 cut(s)	432
Bst2UI	CCWGG	4 cut(s)	217, 225, 615, 627
Bst4CI	ACNGT	4 cut(s)	88, 181, 359, 436
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	652
BstDEI	CTNAG	2 cut(s)	534, 655
BstKTI	GATC	3 cut(s)	271, 352, 504
BstMBI	GATC	3 cut(s)	268, 349, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	4 cut(s)	217, 225, 615, 627
BstSCI	CCNGG	4 cut(s)	215, 223, 613, 625
BstX2I	RGATCY	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	268
BstZ17I	GTATAC	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	67, 144, 307
BtsIMutI	CAGTG	3 cut(s)	186, 480, 504
Cac8I	GCNNGC	1 cut(s)	652
Cfr13I	GGNCC	3 cut(s)	65, 227, 617
CsiI	ACCWGGT	2 cut(s)	223, 613
Csp6I	GTAC	2 cut(s)	246, 456
CviAII	CATG	1 cut(s)	442
CviJI	RGCY	9 cut(s)	7, 67, 144, 292, 307, 319, 383, 440, 669
CviKI_1	RGCY	9 cut(s)	7, 67, 144, 292, 307, 319, 383, 440, 669
CviQI	GTAC	2 cut(s)	246, 456
DdeI	CTNAG	2 cut(s)	534, 655
DpnI	GATC	3 cut(s)	270, 351, 503
DpnII	GATC	3 cut(s)	268, 349, 501
EaeI	YGGCCR	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	321
Eco47I	GGWCC	2 cut(s)	227, 617
Eco57I	CTGAAG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	29
EcoRII	CCWGG	4 cut(s)	215, 223, 613, 625
EcoT38I	GRGCYC	1 cut(s)	321
FaeI	CATG	1 cut(s)	445
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	2 cut(s)	145, 603
FatI	CATG	1 cut(s)	441
FblI	GTMKAC	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	321
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	3 cut(s)	67, 144, 307
HapII	CCGG	1 cut(s)	68
Hin1II	CATG	1 cut(s)	445
HinfI	GANTC	2 cut(s)	74, 585
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	2 cut(s)	115, 432
Hpy188I	TCNGA	2 cut(s)	537, 705
Hpy188III	TCNNGA	5 cut(s)	272, 353, 419, 591, 608
Hpy8I	GTNNAC	2 cut(s)	115, 432
HpyAV	CCTTC	2 cut(s)	373, 700
HpyCH4III	ACNGT	4 cut(s)	88, 181, 359, 436
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	3 cut(s)	158, 542, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	2 cut(s)	534, 655
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	1 cut(s)	445
Kzo9I	GATC	3 cut(s)	268, 349, 501
LmnI	GCTCC	1 cut(s)	34
LweI	GCATC	1 cut(s)	324
MabI	ACCWGGT	2 cut(s)	223, 613
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	20, 211
MalI	GATC	3 cut(s)	270, 351, 503
MboI	GATC	3 cut(s)	268, 349, 501
MboII	GAAGA	4 cut(s)	83, 176, 473, 610
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	321
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	3 cut(s)	103, 252, 710
MluNI	TGGCCA	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	579
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	4 cut(s)	25, 197, 259, 587
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	144
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	4 cut(s)	217, 225, 615, 627
MvaI	CCWGG	4 cut(s)	217, 225, 615, 627
MwoI	GCNNNNNNNGC	1 cut(s)	539
NdeII	GATC	3 cut(s)	268, 349, 501
NlaIII	CATG	1 cut(s)	445
NlaIV	GGNNCC	3 cut(s)	222, 270, 619
NmuCI	GTSAC	1 cut(s)	20
NspV	TTCGAA	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	579
PpsI	GAGTC	1 cut(s)	579
PsiI	TTATAA	2 cut(s)	191, 564
Psp6I	CCWGG	4 cut(s)	215, 223, 613, 625
PspGI	CCWGG	4 cut(s)	215, 223, 613, 625
PspN4I	GGNNCC	3 cut(s)	222, 270, 619
PspPI	GGNCC	3 cut(s)	65, 227, 617
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	2 cut(s)	247, 457
RsaNI	GTAC	2 cut(s)	246, 456
SaqAI	TTAA	1 cut(s)	366
Sau3AI	GATC	3 cut(s)	268, 349, 501
Sau96I	GGNCC	3 cut(s)	65, 227, 617
SchI	GAGTC	1 cut(s)	579
ScrFI	CCNGG	4 cut(s)	217, 225, 615, 627
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	7 cut(s)	9, 22, 226, 294, 349, 616, 631
SexAI	ACCWGGT	2 cut(s)	223, 613
SfaNI	GCATC	1 cut(s)	324
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	2 cut(s)	227, 617
Sse9I	AATT	3 cut(s)	103, 252, 710
SsiI	CCGC	1 cut(s)	403
SspI	AATATT	2 cut(s)	41, 694
StyD4I	CCNGG	4 cut(s)	215, 223, 613, 625
TaaI	ACNGT	4 cut(s)	88, 181, 359, 436
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	44
TasI	AATT	3 cut(s)	103, 252, 710
TatI	WGTACW	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	3 cut(s)	186, 480, 511
TseFI	GTSAC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	17, 392
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	3 cut(s)	186, 480, 511
VpaK11BI	GGWCC	2 cut(s)	227, 617
XmiI	GTMKAC	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.