Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025018.1

Orthogroup ID

OG0004018

Physical Location & Seq

Genomic Coordinates Forward (+)

4747 .. 7479

Gene Structure 2733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025018.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atggtgaggataatacctatggccgcctcctccatccgaccctccctctccaccttcaggttcgccggagcttcccgcctcggcggcctctccctcaccgccttcgctccgccccggaggcagctcgccttcttccacctcggtagcgctgtgtcgcagtcgcagtcgtttggtctgaaagcttcgaggatgttgagcagtgatggtaaaaccatgagggtggtgtctgctggtaatgcagcacaggcaagcacaacagcttcgccggagaatgtcctggagtgggtcaagcaggacaaacggaggcttctccatgttgtataccgcgttggggatttggacaggaccataaagttctacacggagtgcctgggaatgaaattgctgcggaaacgtgacataccagaggaaagatatacaaatgcttttcttggatatgggccggaggattcccattttgtcatcgaactcacttacaattatggggttgacaagtatgatattggaactgcatttggtcattttggtgttgctgttgaggatgttgctaagactgtggaacttgtaaaagctaagggaggcaaggtaacccgagaacctggtccagtgaaaggtggaaatacagtaattgcttttgttgaagatcctgatggttataagtttgaactcttggaaagagggcctacacctgagcccttgtgtcaaattatgcttcgtgtaggtgatcttgatcgttccatagctttttatgagaaggcttttggcatggagcttcttcgcaagagagataatccagagtacaagtatactatagcaatgctcggttatggccctgaagacaaaaatgctgttctggaattgacatacaactatggggtcactgaatatgacaaaggaaatgcttatgctcagatagcggtaggcacagatgatgtctataaaactgctgaagcaattaaactctgcggaggcaagattacccgggaaccggggccattacctggtcttaacacaaagatcactgcttgcttggaccctgatggttggaagtcggttttcgtggataatgttgatttccttaaggaattggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

364

Amino Acids

40.22

Weight (kDa)

7.6

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67280 AT1G67280
fragaria_vesca	FvH4_1g05730 FvH4_1g05730 FvH4_2g35710 FvH4_2g35710
malus_domestica	MD02G1058400.v1.1 MD15G1094500.v1.1 MD15G1192700.v1.1
prunus_persica	Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.7G224600_v2.0.a1 Prupe.7G224600_v2.0.a1
pyrus_communis	pycom15g08730
rosa_chinensis	RchiOBHm_Chr2g0091371 RchiOBHm_Chr6g0306071
rosa_laevigata	RLG00000010826 RLG00000016218
rosa_multiflora	Rmu_sc0025018.1_g000002
rosa_roxburghii	Rroxscaffold_2G00150140 Rroxscaffold_7G00162080
rosa_rugosa	Rorug02G0017000 Rorug06G0346800
rosa_samantha	Rh2BG061200 Rh2CG063300 Rh6AG458900 Rh6BG441900 Rh6CG473400 Rh6DG459700
rosa_wichuraiana	Rw2G004790 Rw6G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	657
AccB7I	CCANNNNNTGG	1 cut(s)	1001
AccI	GTMKAC	2 cut(s)	321, 806
AccII	CGCG	1 cut(s)	327
AciI	CCGC	9 cut(s)	24, 76, 84, 99, 110, 325, 388, 917, 966
AclWI	GGATC	1 cut(s)	638
AcoI	YGGCCR	1 cut(s)	21
AcuI	CTGAAG	3 cut(s)	40, 855, 969
AdeI	CACNNNGTG	1 cut(s)	366
AfaI	GTAC	1 cut(s)	800
AfeI	AGCGCT	1 cut(s)	148
AfiI	CCNNNNNNNGG	6 cut(s)	57, 283, 331, 611, 988, 1001
AflII	CTTAAG	1 cut(s)	1079
AgsI	TTSAA	2 cut(s)	641, 665
AjnI	CCWGG	4 cut(s)	276, 369, 598, 1000
AluBI	AGCT	7 cut(s)	71, 124, 182, 260, 572, 743, 772
AluI	AGCT	7 cut(s)	71, 124, 182, 260, 572, 743, 772
AlwI	GGATC	1 cut(s)	638
Ama87I	CYCGRG	2 cut(s)	591, 981
Aor51HI	AGCGCT	1 cut(s)	148
AoxI	GGCC	6 cut(s)	21, 85, 440, 680, 829, 992
ApeKI	GCWGC	3 cut(s)	121, 239, 385
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	7 cut(s)	345, 440, 602, 680, 830, 992, 1033
AsuC2I	CCSGG	4 cut(s)	115, 982, 983, 990
AsuHPI	GGTGA	3 cut(s)	16, 88, 734
AvaI	CYCGRG	2 cut(s)	591, 981
AvaII	GGWCC	3 cut(s)	345, 602, 1033
BanII	GRGCYC	1 cut(s)	696
BbsI	GAAGAC	1 cut(s)	843
BbvI	GCAGC	3 cut(s)	133, 251, 372
BccI	CCATC	4 cut(s)	41, 197, 644, 1034
BciT130I	CCWGG	4 cut(s)	278, 371, 600, 1002
BcnI	CCSGG	4 cut(s)	115, 982, 983, 990
BfmI	CTRYAG	1 cut(s)	810
BfoI	RGCGCY	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	1079
BglI	GCCNNNNNGGC	2 cut(s)	84, 118
BisI	GCNGC	5 cut(s)	24, 85, 122, 240, 386
BlsI	GCNGC	5 cut(s)	25, 86, 123, 241, 387
Bme1390I	CCNGG	8 cut(s)	115, 278, 371, 600, 982, 983, 990, 1002
Bme18I	GGWCC	3 cut(s)	345, 602, 1033
BmeT110I	CYCGRG	2 cut(s)	591, 981
BmgT120I	GGNCC	7 cut(s)	345, 440, 602, 680, 830, 992, 1033
BmiI	GGNNCC	3 cut(s)	987, 993, 1035
BmrFI	CCNGG	8 cut(s)	115, 278, 371, 600, 982, 983, 990, 1002
BpiI	GAAGAC	1 cut(s)	843
BpmI	CTGGAG	1 cut(s)	299
Bpu10I	CCTNAGC	2 cut(s)	573, 690
BpuMI	CCSGG	4 cut(s)	115, 982, 983, 990
BsaBI	GATNNNNATC	1 cut(s)	729
BsaJI	CCNNGG	6 cut(s)	79, 113, 139, 370, 981, 989
BsaXI	ACNNNNNCTCC	2 cut(s)	570, 600
Bsc4I	CCNNNNNNNGG	6 cut(s)	57, 283, 331, 611, 988, 1001
Bse1I	ACTGG	1 cut(s)	605
Bse3DI	GCAATG	1 cut(s)	822
Bse8I	GATNNNNATC	1 cut(s)	729
BseBI	CCWGG	4 cut(s)	278, 371, 600, 1002
BseDI	CCNNGG	6 cut(s)	79, 113, 139, 370, 981, 989
BseGI	GGATG	3 cut(s)	33, 195, 547
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	6 cut(s)	57, 283, 331, 611, 988, 1001
BseMI	GCAATG	1 cut(s)	822
BseMII	CTCAG	2 cut(s)	681, 923
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	3 cut(s)	133, 251, 372
Bsh1236I	CGCG	1 cut(s)	327
BshFI	GGCC	6 cut(s)	23, 87, 442, 682, 831, 994
BsiHKCI	CYCGRG	2 cut(s)	591, 981
BsiSI	CCGG	6 cut(s)	66, 115, 266, 443, 982, 989
BslI	CCNNNNNNNGG	6 cut(s)	57, 283, 331, 611, 988, 1001
BsnI	GGCC	6 cut(s)	23, 87, 442, 682, 831, 994
BsoBI	CYCGRG	2 cut(s)	591, 981
Bsp1286I	GDGCHC	1 cut(s)	696
Bsp143I	GATC	4 cut(s)	643, 724, 730, 1017
BspACI	CCGC	9 cut(s)	24, 76, 84, 99, 110, 325, 388, 917, 966
BspANI	GGCC	6 cut(s)	23, 87, 442, 682, 831, 994
BspCNI	CTCAG	2 cut(s)	682, 922
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	3 cut(s)	987, 993, 1035
BspPI	GGATC	1 cut(s)	638
BspTI	CTTAAG	1 cut(s)	1079
BsrDI	GCAATG	1 cut(s)	822
BsrI	ACTGG	1 cut(s)	605
BssECI	CCNNGG	6 cut(s)	79, 113, 139, 370, 981, 989
BssMI	GATC	4 cut(s)	643, 724, 730, 1017
BssNAI	GTATAC	2 cut(s)	322, 807
Bst1107I	GTATAC	2 cut(s)	322, 807
Bst2UI	CCWGG	4 cut(s)	278, 371, 600, 1002
Bst4CI	ACNGT	2 cut(s)	556, 625
BstAFI	CTTAAG	1 cut(s)	1079
BstC8I	GCNNGC	3 cut(s)	126, 250, 1027
BstDEI	CTNAG	4 cut(s)	549, 573, 690, 909
BstEII	GGTNACC	1 cut(s)	586
BstF5I	GGATG	3 cut(s)	33, 195, 547
BstFNI	CGCG	1 cut(s)	327
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	4 cut(s)	646, 727, 733, 1020
BstMBI	GATC	4 cut(s)	643, 724, 730, 1017
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 118, 236, 245, 914
BstNI	CCWGG	4 cut(s)	278, 371, 600, 1002
BstPI	GGTNACC	1 cut(s)	586
BstSCI	CCNGG	8 cut(s)	113, 276, 369, 598, 980, 981, 988, 1000
BstSFI	CTRYAG	1 cut(s)	810
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	3 cut(s)	133, 251, 372
BstV2I	GAAGAC	1 cut(s)	843
BstX2I	RGATCY	1 cut(s)	643
BstXI	CCANNNNNNTGG	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	643
BstZ17I	GTATAC	2 cut(s)	322, 807
BsuRI	GGCC	6 cut(s)	23, 87, 442, 682, 831, 994
BtsCI	GGATG	3 cut(s)	33, 195, 547
BtsI	GCAGTG	2 cut(s)	205, 1020
BtsIMutI	CAGTG	4 cut(s)	205, 612, 879, 1020
Cac8I	GCNNGC	3 cut(s)	126, 250, 1027
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	7 cut(s)	345, 440, 602, 680, 830, 992, 1033
Cfr9I	CCCGGG	1 cut(s)	981
CsiI	ACCWGGT	2 cut(s)	598, 1000
Csp6I	GTAC	1 cut(s)	799
CviAII	CATG	3 cut(s)	214, 314, 766
CviQI	GTAC	1 cut(s)	799
DdeI	CTNAG	4 cut(s)	549, 573, 690, 909
DpnI	GATC	4 cut(s)	645, 726, 732, 1019
DpnII	GATC	4 cut(s)	643, 724, 730, 1017
DraIII	CACNNNGTG	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	696
Eco47I	GGWCC	3 cut(s)	345, 602, 1033
Eco47III	AGCGCT	1 cut(s)	148
Eco57I	CTGAAG	3 cut(s)	40, 855, 969
Eco88I	CYCGRG	2 cut(s)	591, 981
Eco91I	GGTNACC	1 cut(s)	586
EcoO109I	RGGNCCY	1 cut(s)	680
EcoO65I	GGTNACC	1 cut(s)	586
EcoRII	CCWGG	4 cut(s)	276, 369, 598, 1000
EcoT38I	GRGCYC	1 cut(s)	696
FaeI	CATG	3 cut(s)	217, 317, 769
FatI	CATG	3 cut(s)	213, 313, 765
FauI	CCCGC	1 cut(s)	83
FblI	GTMKAC	2 cut(s)	321, 806
Fnu4HI	GCNGC	5 cut(s)	24, 85, 122, 240, 386
FokI	GGATG	3 cut(s)	20, 202, 554
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	5 cut(s)	24, 85, 122, 240, 386
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	5 cut(s)	24, 85, 122, 240, 386
GsuI	CTGGAG	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	6 cut(s)	23, 87, 442, 682, 831, 994
HapII	CCGG	6 cut(s)	66, 115, 266, 443, 982, 989
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	217, 317, 769
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	6 cut(s)	66, 115, 266, 443, 982, 989
HphI	GGTGA	3 cut(s)	16, 88, 734
Hpy166II	GTNNAC	3 cut(s)	322, 490, 807
Hpy188I	TCNGA	3 cut(s)	38, 177, 912
Hpy188III	TCNNGA	4 cut(s)	647, 728, 794, 854
Hpy8I	GTNNAC	3 cut(s)	322, 490, 807
HpyAV	CCTTC	4 cut(s)	64, 112, 139, 748
HpyCH4III	ACNGT	2 cut(s)	556, 625
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	2 cut(s)	239, 512
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 118, 236, 245, 914
HpyF3I	CTNAG	4 cut(s)	549, 573, 690, 909
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	3 cut(s)	217, 317, 769
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	643, 724, 730, 1017
LmnI	GCTCC	3 cut(s)	68, 112, 769
Lsp1109I	GCAGC	3 cut(s)	133, 251, 372
MabI	ACCWGGT	2 cut(s)	598, 1000
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	3 cut(s)	395, 586, 877
MalI	GATC	4 cut(s)	645, 726, 732, 1019
MboI	GATC	4 cut(s)	643, 724, 730, 1017
MboII	GAAGA	4 cut(s)	124, 653, 767, 848
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	1 cut(s)	696
MluCI	AATT	7 cut(s)	380, 478, 627, 705, 857, 954, 1085
MmeI	TCCRAC	2 cut(s)	61, 1025
MseI	TTAA	3 cut(s)	957, 1008, 1080
MslI	CAYNNNNRTG	2 cut(s)	218, 525
MspCI	CTTAAG	1 cut(s)	1079
MspI	CCGG	6 cut(s)	66, 115, 266, 443, 982, 989
MspR9I	CCNGG	8 cut(s)	115, 278, 371, 600, 982, 983, 990, 1002
MvaI	CCWGG	4 cut(s)	278, 371, 600, 1002
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	5 cut(s)	84, 118, 236, 245, 914
NciI	CCSGG	4 cut(s)	115, 982, 983, 990
NdeII	GATC	4 cut(s)	643, 724, 730, 1017
NlaIII	CATG	3 cut(s)	217, 317, 769
NlaIV	GGNNCC	3 cut(s)	987, 993, 1035
NmeAIII	GCCGAG	1 cut(s)	60
NmuCI	GTSAC	2 cut(s)	395, 877
PfeI	GAWTC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	1001
PfoI	TCCNGGA	1 cut(s)	276
PkrI	GCNGC	5 cut(s)	25, 86, 123, 241, 387
PsiI	TTATAA	1 cut(s)	657
Psp6I	CCWGG	4 cut(s)	276, 369, 598, 1000
PspEI	GGTNACC	1 cut(s)	586
PspGI	CCWGG	4 cut(s)	276, 369, 598, 1000
PspN4I	GGNNCC	3 cut(s)	987, 993, 1035
PspPI	GGNCC	7 cut(s)	345, 440, 602, 680, 830, 992, 1033
PsuI	RGATCY	1 cut(s)	643
RsaI	GTAC	1 cut(s)	800
RsaNI	GTAC	1 cut(s)	799
RseI	CAYNNNNRTG	2 cut(s)	218, 525
SaqAI	TTAA	3 cut(s)	957, 1008, 1080
SatI	GCNGC	5 cut(s)	24, 85, 122, 240, 386
Sau3AI	GATC	4 cut(s)	643, 724, 730, 1017
Sau96I	GGNCC	7 cut(s)	345, 440, 602, 680, 830, 992, 1033
ScrFI	CCNGG	8 cut(s)	115, 278, 371, 600, 982, 983, 990, 1002
SduI	GDGCHC	1 cut(s)	696
SexAI	ACCWGGT	2 cut(s)	598, 1000
SfcI	CTRYAG	1 cut(s)	810
SinI	GGWCC	3 cut(s)	345, 602, 1033
SmaI	CCCGGG	1 cut(s)	983
SmiMI	CAYNNNNRTG	2 cut(s)	218, 525
SmlI	CTYRAG	1 cut(s)	1079
SmoI	CTYRAG	1 cut(s)	1079
Sse9I	AATT	7 cut(s)	380, 478, 627, 705, 857, 954, 1085
SsiI	CCGC	9 cut(s)	24, 76, 84, 99, 110, 325, 388, 917, 966
StyD4I	CCNGG	8 cut(s)	113, 276, 369, 598, 980, 981, 988, 1000
TaaI	ACNGT	2 cut(s)	556, 625
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	2 cut(s)	185, 465
TasI	AATT	7 cut(s)	380, 478, 627, 705, 857, 954, 1085
TatI	WGTACW	1 cut(s)	798
TauI	GCSGC	2 cut(s)	26, 87
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	3 cut(s)	957, 1008, 1080
Tru9I	TTAA	3 cut(s)	957, 1008, 1080
TscAI	CASTG	4 cut(s)	205, 612, 886, 1027
TseFI	GTSAC	2 cut(s)	395, 877
TseI	GCWGC	3 cut(s)	121, 239, 385
Tsp45I	GTSAC	2 cut(s)	395, 877
TspDTI	ATGAA	1 cut(s)	392
TspGWI	ACGGA	2 cut(s)	316, 377
TspMI	CCCGGG	1 cut(s)	981
TspRI	CASTG	4 cut(s)	205, 612, 886, 1027
Van91I	CCANNNNNTGG	1 cut(s)	1001
Vha464I	CTTAAG	1 cut(s)	1079
VpaK11BI	GGWCC	3 cut(s)	345, 602, 1033
XmaI	CCCGGG	1 cut(s)	981
XmiI	GTMKAC	2 cut(s)	321, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.