Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004018

Physical Location & Seq

Genomic Coordinates Forward (+)

5606980 .. 5610343

Gene Structure 3364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g08730.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGAAAAAAACAAACGGAGTGAGCGAGACTGTGGTGCAGAAGAAAGGGAACCAAAAAATGTCATCTTTATCGGCTACTCTGAATCTCTTAAGACCCTATCTGGCTCCATCGCCACCGTCCGTGAGGTTTTTTGGTGTGCGAAACTCTGCCTCTTCTTATTCTACTTCCCGGAGACTCGCTCTCTTTCAGCTCGGCTCTGCTCTGCCTCAATCACAACTGTTAGGTGCAAAAGCATCAGAGTTGCTAAGAGGAGAGGGAAACCCTTTAGAGGCTGCCCCAGTTGCGAATTTGGCACAGGCAGGCACCGCTATTGCCAAGGAAAATGCACTGGAGTGGGTAAAAAATGACAAAAGAAGAATGCTTCATGTTGTCTATCGTGTTGGGGACTTGGACAAGACTATAAAATTCTATACTGAATGTTTGGGGATGAAGCTGTTAAGAAAACGTGACATACCTGAGGATCGATATTCGAATGCTTTTCTTGGATATGGACCAGAAGAATCCAATTTTGTGGTTGAACTTACATACAATTACGGAGTGGACAAGTACAACATTGGGACTGGTTTTGGCCATTTTGGCATTGCAGTTGAAGATGTAACCAAAACCGTGGAACTTATAAAGGCAAAGGGAGGGAAAGTTACCAAGGAACCTGGTCCTGCTAAAGGTGGCAATACAATAGTTGCCTCTGTTGAGGATCCCGATGGCTACACGTTTGAGCTTTTGGAGAGAGGGCCTTCACCTGAGCCCTTTCGTCAAGTGATGCTTCGTGTAGGTGATCTTGACCGTGCTATTAACTTTTATAAGAAGGCTTATGGGATGGAACTTCTCCACAAGAGAGATCAACCTGAATACAAGTATACTGTTGCCATGTTGGGCTACGGTCCTGAAGATAAGAACGCAGTGCTTGAACTGACGTACAACTATGGGATCACAGATTATGACAAGGGAAATGGTTACGCGCAGATTGCAATAGGCACAGATGATGTTTACAAGACTGCAGAAGCAATCAAACTAAGTGGAGGGAAGATTATTCTTGATCCTGGGCCTTTGCCAGGTATCAACACAAAGATAACTGCTTGCCTCGACCCTGATGGCTGGAAATCGGTCTTTGTTGATAAGGCTGATTTTCTGAAGGAATTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

382

Amino Acids

41.9

Weight (kDa)

8.49

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67280 AT1G67280
fragaria_vesca	FvH4_1g05730 FvH4_1g05730 FvH4_2g35710 FvH4_2g35710
malus_domestica	MD02G1058400.v1.1 MD15G1094500.v1.1 MD15G1192700.v1.1
prunus_persica	Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.1G449600_v2.0.a1 Prupe.7G224600_v2.0.a1 Prupe.7G224600_v2.0.a1
pyrus_communis	pycom15g08730
rosa_chinensis	RchiOBHm_Chr2g0091371 RchiOBHm_Chr6g0306071
rosa_laevigata	RLG00000010826 RLG00000016218
rosa_multiflora	Rmu_sc0025018.1_g000002
rosa_roxburghii	Rroxscaffold_2G00150140 Rroxscaffold_7G00162080
rosa_rugosa	Rorug02G0017000 Rorug06G0346800
rosa_samantha	Rh2BG061200 Rh2CG063300 Rh6AG458900 Rh6BG441900 Rh6CG473400 Rh6DG459700
rosa_wichuraiana	Rw2G004790 Rw6G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	617, 801
AccB1I	GGYRCC	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	857
AccII	CGCG	1 cut(s)	959
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	5 cut(s)	468, 689, 702, 935, 1031
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	2 cut(s)	286, 404
AcuI	CTGAAG	1 cut(s)	906
AfaI	GTAC	2 cut(s)	548, 917
AfiI	CCNNNNNNNGG	3 cut(s)	268, 662, 1052
AflII	CTTAAG	1 cut(s)	88
AflIII	ACRYGT	1 cut(s)	708
AgsI	TTSAA	3 cut(s)	518, 590, 908
AjnI	CCWGG	3 cut(s)	649, 1039, 1051
AleI	CACNNNNGTG	1 cut(s)	331
AluBI	AGCT	3 cut(s)	190, 433, 718
AluI	AGCT	3 cut(s)	190, 433, 718
Alw26I	GTCTC	2 cut(s)	20, 166
AlwI	GGATC	5 cut(s)	468, 689, 702, 935, 1031
AoxI	GGCC	3 cut(s)	568, 731, 1043
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	2 cut(s)	286, 404
AspLEI	GCGC	1 cut(s)	961
AspS9I	GGNCC	5 cut(s)	491, 653, 731, 881, 1043
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	729, 785
AsuII	TTCGAA	1 cut(s)	470
AvaII	GGWCC	3 cut(s)	491, 653, 881
AxyI	CCTNAGG	1 cut(s)	456
BalI	TGGCCA	1 cut(s)	570
BamHI	GGATCC	1 cut(s)	694
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	747
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	4 cut(s)	115, 695, 811, 1085
BciT130I	CCWGG	3 cut(s)	651, 1041, 1053
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	20, 166
BfmI	CTRYAG	1 cut(s)	996
BfrI	CTTAAG	1 cut(s)	88
BglI	GCCNNNNNGGC	1 cut(s)	576
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	4 cut(s)	169, 651, 1041, 1053
Bme18I	GGWCC	3 cut(s)	491, 653, 881
BmgT120I	GGNCC	5 cut(s)	491, 653, 731, 881, 1043
BmiI	GGNNCC	5 cut(s)	50, 105, 304, 648, 696
BmrFI	CCNGG	4 cut(s)	169, 651, 1041, 1053
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	2 cut(s)	242, 750
BmuI	ACTGGG	1 cut(s)	272
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpmI	CTGGAG	1 cut(s)	350
Bpu10I	CCTNAGC	1 cut(s)	741
Bpu14I	TTCGAA	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	169
Bsa29I	ATCGAT	1 cut(s)	463
BsaJI	CCNNGG	4 cut(s)	315, 606, 642, 1040
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 662, 1052
Bse1I	ACTGG	3 cut(s)	278, 333, 565
Bse21I	CCTNAGG	1 cut(s)	456
Bse3DI	GCAATG	1 cut(s)	579
BseBI	CCWGG	3 cut(s)	651, 1041, 1053
BseCI	ATCGAT	1 cut(s)	463
BseDI	CCNNGG	4 cut(s)	315, 606, 642, 1040
BseGI	GGATG	2 cut(s)	432, 822
BseLI	CCNNNNNNNGG	3 cut(s)	268, 662, 1052
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	2 cut(s)	447, 732
BseNI	ACTGG	3 cut(s)	278, 333, 565
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	259
BsgI	GTGCAG	1 cut(s)	56
Bsh1236I	CGCG	1 cut(s)	959
BshFI	GGCC	3 cut(s)	570, 733, 1045
BshNI	GGYRCC	1 cut(s)	302
BshVI	ATCGAT	1 cut(s)	463
BsiSI	CCGG	1 cut(s)	169
BslFI	GGGAC	2 cut(s)	398, 571
BslI	CCNNNNNNNGG	3 cut(s)	268, 662, 1052
BsmAI	GTCTC	2 cut(s)	20, 166
BsmFI	GGGAC	2 cut(s)	398, 571
BsmI	GAATGC	2 cut(s)	363, 478
BsnI	GGCC	3 cut(s)	570, 733, 1045
Bsp119I	TTCGAA	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	6 cut(s)	460, 694, 775, 838, 927, 1036
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	3 cut(s)	570, 733, 1045
BspCNI	CTCAG	2 cut(s)	448, 733
BspDI	ATCGAT	1 cut(s)	463
BspFNI	CGCG	1 cut(s)	959
BspLI	GGNNCC	5 cut(s)	50, 105, 304, 648, 696
BspMAI	CTGCAG	1 cut(s)	1000
BspPI	GGATC	5 cut(s)	468, 689, 702, 935, 1031
BspT104I	TTCGAA	1 cut(s)	470
BspT107I	GGYRCC	1 cut(s)	302
BspTI	CTTAAG	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	579
BsrI	ACTGG	3 cut(s)	278, 333, 565
BssECI	CCNNGG	4 cut(s)	315, 606, 642, 1040
BssMI	GATC	6 cut(s)	460, 694, 775, 838, 927, 1036
BssNAI	GTATAC	1 cut(s)	858
BssT1I	CCWWGG	2 cut(s)	315, 642
Bst1107I	GTATAC	1 cut(s)	858
Bst2UI	CCWGG	3 cut(s)	651, 1041, 1053
Bst4CI	ACNGT	7 cut(s)	31, 117, 219, 607, 785, 862, 881
Bst6I	CTCTTC	1 cut(s)	157
BstAFI	CTTAAG	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	301, 1078
BstDEI	CTNAG	4 cut(s)	245, 456, 741, 1013
BstDSI	CCRYGG	1 cut(s)	606
BstENI	CCTNNNNNAGG	2 cut(s)	660, 1050
BstF5I	GGATG	2 cut(s)	432, 822
BstFNI	CGCG	1 cut(s)	959
BstHHI	GCGC	1 cut(s)	961
BstKTI	GATC	6 cut(s)	463, 697, 778, 841, 930, 1039
BstMAI	GTCTC	2 cut(s)	20, 166
BstMBI	GATC	6 cut(s)	460, 694, 775, 838, 927, 1036
BstMWI	GCNNNNNNNGC	5 cut(s)	281, 290, 305, 576, 965
BstNI	CCWGG	3 cut(s)	651, 1041, 1053
BstSCI	CCNGG	4 cut(s)	167, 649, 1039, 1051
BstSFI	CTRYAG	1 cut(s)	996
BstUI	CGCG	1 cut(s)	959
BstV1I	GCAGC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	694
BstXI	CCANNNNNNTGG	2 cut(s)	511, 607
BstYI	RGATCY	1 cut(s)	694
BstZ17I	GTATAC	1 cut(s)	858
Bsu15I	ATCGAT	1 cut(s)	463
Bsu36I	CCTNAGG	1 cut(s)	456
BsuRI	GGCC	3 cut(s)	570, 733, 1045
BsuTUI	ATCGAT	1 cut(s)	463
BtgI	CCRYGG	1 cut(s)	606
BtgZI	GCGATG	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	432, 822
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	2 cut(s)	326, 906
Cac8I	GCNNGC	2 cut(s)	301, 1078
CfoI	GCGC	1 cut(s)	961
Cfr13I	GGNCC	5 cut(s)	491, 653, 731, 881, 1043
ClaI	ATCGAT	1 cut(s)	463
CsiI	ACCWGGT	1 cut(s)	649
Csp6I	GTAC	2 cut(s)	547, 916
CspCI	CAANNNNNGTGG	2 cut(s)	997, 1032
CviAII	CATG	2 cut(s)	365, 868
CviQI	GTAC	2 cut(s)	547, 916
DdeI	CTNAG	4 cut(s)	245, 456, 741, 1013
DpnI	GATC	6 cut(s)	462, 696, 777, 840, 929, 1038
DpnII	GATC	6 cut(s)	460, 694, 775, 838, 927, 1036
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco130I	CCWWGG	2 cut(s)	315, 642
Eco24I	GRGCYC	1 cut(s)	747
Eco47I	GGWCC	3 cut(s)	491, 653, 881
Eco57I	CTGAAG	1 cut(s)	906
Eco81I	CCTNAGG	1 cut(s)	456
EcoNI	CCTNNNNNAGG	2 cut(s)	660, 1050
EcoO109I	RGGNCCY	1 cut(s)	731
EcoRII	CCWGG	3 cut(s)	649, 1039, 1051
EcoT14I	CCWWGG	2 cut(s)	315, 642
EcoT38I	GRGCYC	1 cut(s)	747
ErhI	CCWWGG	2 cut(s)	315, 642
FaeI	CATG	2 cut(s)	368, 871
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	2 cut(s)	398, 571
FatI	CATG	2 cut(s)	364, 867
FblI	GTMKAC	1 cut(s)	857
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	2 cut(s)	439, 829
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	1 cut(s)	273
GlaI	GCGC	1 cut(s)	960
GluI	GCNGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	3 cut(s)	570, 733, 1045
HapII	CCGG	1 cut(s)	169
HhaI	GCGC	1 cut(s)	961
Hin1II	CATG	2 cut(s)	368, 871
Hin6I	GCGC	1 cut(s)	959
HinP1I	GCGC	1 cut(s)	959
HinfI	GANTC	3 cut(s)	82, 174, 500
HpaII	CCGG	1 cut(s)	169
HphI	GGTGA	2 cut(s)	729, 785
Hpy166II	GTNNAC	3 cut(s)	541, 858, 988
Hpy188I	TCNGA	3 cut(s)	81, 238, 1131
Hpy188III	TCNNGA	4 cut(s)	698, 779, 884, 1034
Hpy8I	GTNNAC	3 cut(s)	541, 858, 988
HpyAV	CCTTC	3 cut(s)	744, 799, 1126
HpyCH4III	ACNGT	7 cut(s)	31, 117, 219, 607, 785, 862, 881
HpyCH4IV	ACGT	3 cut(s)	445, 710, 914
HpyCH4V	TGCA	6 cut(s)	37, 227, 326, 584, 968, 998
HpyF10VI	GCNNNNNNNGC	5 cut(s)	281, 290, 305, 576, 965
HpyF3I	CTNAG	4 cut(s)	245, 456, 741, 1013
HpySE526I	ACGT	3 cut(s)	445, 710, 914
Hsp92II	CATG	2 cut(s)	368, 871
HspAI	GCGC	1 cut(s)	959
Kzo9I	GATC	6 cut(s)	460, 694, 775, 838, 927, 1036
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	2 cut(s)	242, 750
MabI	ACCWGGT	1 cut(s)	649
MaeII	ACGT	3 cut(s)	445, 710, 914
MaeIII	GTNAC	4 cut(s)	446, 595, 637, 953
MalI	GATC	6 cut(s)	462, 696, 777, 840, 929, 1038
MboI	GATC	6 cut(s)	460, 694, 775, 838, 927, 1036
MboII	GAAGA	7 cut(s)	52, 144, 366, 509, 602, 899, 1036
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	1 cut(s)	747
MlsI	TGGCCA	1 cut(s)	570
MluCI	AATT	5 cut(s)	286, 404, 505, 529, 1136
MluNI	TGGCCA	1 cut(s)	570
MlyI	GAGTC	1 cut(s)	168
Mox20I	TGGCCA	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	570
MseI	TTAA	3 cut(s)	89, 437, 792
MslI	CAYNNNNRTG	1 cut(s)	331
Msp20I	TGGCCA	1 cut(s)	570
MspCI	CTTAAG	1 cut(s)	88
MspI	CCGG	1 cut(s)	169
MspR9I	CCNGG	4 cut(s)	169, 651, 1041, 1053
Mva1269I	GAATGC	2 cut(s)	363, 478
MvaI	CCWGG	3 cut(s)	651, 1041, 1053
MvnI	CGCG	1 cut(s)	959
MwoI	GCNNNNNNNGC	5 cut(s)	281, 290, 305, 576, 965
NciI	CCSGG	1 cut(s)	169
NdeII	GATC	6 cut(s)	460, 694, 775, 838, 927, 1036
NlaIII	CATG	2 cut(s)	368, 871
NlaIV	GGNNCC	5 cut(s)	50, 105, 304, 648, 696
NmeAIII	GCCGAG	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	446
NspV	TTCGAA	1 cut(s)	470
OliI	CACNNNNGTG	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PctI	GAATGC	2 cut(s)	363, 478
PfeI	GAWTC	2 cut(s)	82, 500
PfoI	TCCNGGA	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	274
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PsiI	TTATAA	2 cut(s)	617, 801
Psp6I	CCWGG	3 cut(s)	649, 1039, 1051
PspGI	CCWGG	3 cut(s)	649, 1039, 1051
PspN4I	GGNNCC	5 cut(s)	50, 105, 304, 648, 696
PspPI	GGNCC	5 cut(s)	491, 653, 731, 881, 1043
PstI	CTGCAG	1 cut(s)	1000
PsuI	RGATCY	1 cut(s)	694
RsaI	GTAC	2 cut(s)	548, 917
RsaNI	GTAC	2 cut(s)	547, 916
RseI	CAYNNNNRTG	1 cut(s)	331
SaqAI	TTAA	3 cut(s)	89, 437, 792
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	6 cut(s)	460, 694, 775, 838, 927, 1036
Sau96I	GGNCC	5 cut(s)	491, 653, 731, 881, 1043
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	4 cut(s)	169, 651, 1041, 1053
SduI	GDGCHC	1 cut(s)	747
SexAI	ACCWGGT	1 cut(s)	649
SfaNI	GCATC	2 cut(s)	242, 750
SfcI	CTRYAG	1 cut(s)	996
SfuI	TTCGAA	1 cut(s)	470
SinI	GGWCC	3 cut(s)	491, 653, 881
SmiMI	CAYNNNNRTG	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	5 cut(s)	286, 404, 505, 529, 1136
SsiI	CCGC	1 cut(s)	306
StyD4I	CCNGG	4 cut(s)	167, 649, 1039, 1051
StyI	CCWWGG	2 cut(s)	315, 642
TaaI	ACNGT	7 cut(s)	31, 117, 219, 607, 785, 862, 881
TaiI	ACGT	3 cut(s)	448, 713, 917
TaqI	TCGA	3 cut(s)	463, 470, 1083
TaqII	GACCGA	1 cut(s)	1093
TasI	AATT	5 cut(s)	286, 404, 505, 529, 1136
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	2 cut(s)	82, 500
Tru1I	TTAA	3 cut(s)	89, 437, 792
Tru9I	TTAA	3 cut(s)	89, 437, 792
TscAI	CASTG	2 cut(s)	333, 906
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	3 cut(s)	17, 353, 443
TspGWI	ACGGA	3 cut(s)	30, 109, 549
TspRI	CASTG	2 cut(s)	333, 906
Vha464I	CTTAAG	1 cut(s)	88
VpaK11BI	GGWCC	3 cut(s)	491, 653, 881
XagI	CCTNNNNNAGG	2 cut(s)	660, 1050
XapI	RAATTY	2 cut(s)	286, 404
XmiI	GTMKAC	1 cut(s)	857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.