Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006982

Physical Location & Seq

Genomic Coordinates Reverse (-)

25351906 .. 25354026

Gene Structure 2121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G67640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGAGAAAAGTCAATCGTCTCCAACCAAGGACGCGTCCACAAAGCAGAAGAATGTAGACGATTGGTTACCGATAACATCCTCTAGAAATGCCAAGTGGTGGTACTCTGCGTTTCACAATGTCACCGCCATGGTCGGGGCTGGTGTACTCAGCTTACCTTACGCCATGTCTAATCTTGGATGGGGACCTGGAGTGACAATAATGATAATGTCATGGCTGATAACATTCTACACACTATGGCAGATGGTGCAAATGCACGAGATGGTTCCAGGGAAGAGGTTCGACAGGTACCACGAATTAGGCCAACACGCGTTTGGGGAGAAGCTCGGACTATGGATCGTGGTGCCACAACAACTAATCGTTGAAGTAGGTGTGGATATTGTGTACATGGTTACGGGAGGGAAGTCATTGAAAAAAATTCATGACCTTCTTTGCACCGATTGCAAAAATATAAGAACTACATATTGGATCATGATCTTCGCTTCCATACACTTTGTTCTTGCTCATCTCCCTAATTTTAACTCCATATCTATCGTCTCCCTTGCTGCTGCCGTTATGTCTTTGAGCTACTCGACAATCGCTTGGGCAACCTCGGTGAAGAAAGGAGTTCATCCAAATGTAGACTACTCGTCTAGAGCATCTACAACCTCAGGAAATGTATTCAACTTCTTGAATGCACTAGGAGATGTGGCATTTGCGTATGCAGGTCACAACGTTGTGTTGGAGATACAAGCTACTATTCCTTCAACACCTGAGAAACCATCAAAGATTGCAATGTGGAAAGGAGTAGTAGTTGCATACATCGTTGTTGCCATATGCTACTTTCCCGTTGCATTTGTTTGCTACTATATCTTTGGAAACAGTGTGGACGACAATATTCTCATGACGTTGGAGAAACCCATCTGGCTTATCGCCATTGCTAACGCATTCGTGGTTGTCCATGTCATTGGAAGCTACCAAATATACGCAATGCCGGTCTTTGACATGCTCGAAACCTTTTTGGTAAAGAAGATGATGTTCGCTCCTTCCTTCAAACTCCGCTTCATCACTCGTACTCTATATGTTGCTTTCACGATGTTCGTTGCCATATGCATCCCATTTTTTGGTGGATTGCTCGGGTTTTTCGGAGGATTCGCCTTTGCCCCAACAACTTACTATCTACCATGCATCATGTGGCTTTGTATCAAGAAACCAAAGAAGTATGGATTGTCTTGGTGTATTAATTGGTTTTGCATAGTAGTTGGTGTTATATTGACGATCCTAGCTCCCATTGGTGGCCTCAGAACCATTATTATCTCAGCCAAAAACTACGAATTCTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001504 GO:0001505 GO:0003333 GO:0003674 GO:0005215 GO:0005310 GO:0005313 GO:0005326 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009628 GO:0015075 GO:0015171 GO:0015172 GO:0015175 GO:0015179 GO:0015180 GO:0015183 GO:0015238 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015800 GO:0015804 GO:0015807 GO:0015808 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0022857 GO:0022858 GO:0032328 GO:0034220 GO:0042221 GO:0042493 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051938 GO:0055085 GO:0065007 GO:0065008 GO:0070778 GO:0071702 GO:0071705 GO:0071944 GO:0080167 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

441

Amino Acids

49.42

Weight (kDa)

9.1

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	30 - 424	4.7e-111	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24400 AT1G67640
fragaria_vesca	FvH4_4g24381 FvH4_4g24381 FvH4_4g24390
malus_domestica	MD13G1111700.v1.1 MD16G1111300.v1.1
prunus_persica	Prupe.1G233800_v2.0.a1
pyrus_communis	pycom16g09430
rosa_chinensis	RchiOBHm_Chr4g0431231 RchiOBHm_Chr4g0431241
rosa_laevigata	RLG00000006916 RLG00000006917
rosa_multiflora	Rmu_sc0005258.1_g000008 Rmu_sc0039160.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372770 Rroxscaffold_5G00372780
rosa_rugosa	Rorug04G0249400 Rorug04G0249500 Rorug04G0249600
rosa_samantha	Rh4AG305500 Rh4BG312800 Rh4BG312900
rosa_wichuraiana	Rw4G026550 Rw4G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	695
Acc65I	GGTACC	1 cut(s)	288
AccB1I	GGYRCC	2 cut(s)	288, 343
AccB7I	CCANNNNNTGG	2 cut(s)	99, 1103
AccI	GTMKAC	2 cut(s)	57, 621
AccII	CGCG	2 cut(s)	35, 311
AciI	CCGC	2 cut(s)	126, 1039
AclI	AACGTT	1 cut(s)	714
AclWI	GGATC	3 cut(s)	344, 476, 1252
AcsI	RAATTY	2 cut(s)	417, 1313
AfaI	GTAC	5 cut(s)	104, 147, 290, 386, 1054
AfiI	CCNNNNNNNGG	4 cut(s)	99, 135, 1103, 1274
AflIII	ACRYGT	2 cut(s)	33, 309
AgsI	TTSAA	6 cut(s)	365, 412, 664, 673, 747, 1033
AhdI	GACNNNNNGTC	1 cut(s)	628
AjnI	CCWGG	2 cut(s)	187, 268
AjuI	GAANNNNNNNTTGG	2 cut(s)	448, 480
AluBI	AGCT	6 cut(s)	153, 325, 567, 734, 954, 1265
AluI	AGCT	6 cut(s)	153, 325, 567, 734, 954, 1265
Alw26I	GTCTC	2 cut(s)	24, 541
AlwI	GGATC	3 cut(s)	344, 476, 1252
Ama87I	CYCGRG	1 cut(s)	1115
AoxI	GGCC	2 cut(s)	301, 1276
ApeKI	GCWGC	2 cut(s)	545, 548
ApoI	RAATTY	2 cut(s)	417, 1313
AseI	ATTAAT	1 cut(s)	1221
Asp700I	GAANNNNTTC	1 cut(s)	278
Asp718I	GGTACC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	115, 607
AvaI	CYCGRG	1 cut(s)	1115
AvaII	GGWCC	1 cut(s)	185
AxyI	CCTNAGG	1 cut(s)	649
BanI	GGYRCC	2 cut(s)	288, 343
BauI	CACGAG	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	532, 535
BccI	CCATC	5 cut(s)	174, 238, 256, 769, 908
BceAI	ACGGC	1 cut(s)	536
BciT130I	CCWGG	2 cut(s)	189, 270
BcoDI	GTCTC	2 cut(s)	24, 541
BfaI	CTAG	4 cut(s)	84, 633, 680, 1262
BfuAI	ACCTGC	1 cut(s)	695
BisI	GCNGC	2 cut(s)	546, 549
BlsI	GCNGC	2 cut(s)	547, 550
Bme1390I	CCNGG	2 cut(s)	189, 270
Bme18I	GGWCC	1 cut(s)	185
BmeRI	GACNNNNNGTC	1 cut(s)	628
BmeT110I	CYCGRG	1 cut(s)	1115
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	4 cut(s)	186, 267, 290, 345
BmrFI	CCNGG	2 cut(s)	189, 270
BmsI	GCATC	3 cut(s)	647, 1101, 1176
BpmI	CTGGAG	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	473
BsaJI	CCNNGG	4 cut(s)	27, 129, 269, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	777, 807
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 135, 1103, 1274
Bse118I	RCCGGY	1 cut(s)	973
Bse21I	CCTNAGG	1 cut(s)	649
Bse3DI	GCAATG	3 cut(s)	780, 915, 975
Bse8I	GATNNNNATC	1 cut(s)	473
BseBI	CCWGG	2 cut(s)	189, 270
BseDI	CCNNGG	4 cut(s)	27, 129, 269, 591
BseGI	GGATG	4 cut(s)	77, 185, 610, 1092
BseJI	GATNNNNATC	1 cut(s)	473
BseLI	CCNNNNNNNGG	4 cut(s)	99, 135, 1103, 1274
BseMI	GCAATG	3 cut(s)	780, 915, 975
BseMII	CTCAG	5 cut(s)	163, 663, 744, 1294, 1311
BseXI	GCAGC	2 cut(s)	532, 535
Bsh1236I	CGCG	2 cut(s)	35, 311
BshFI	GGCC	2 cut(s)	303, 1278
BshNI	GGYRCC	2 cut(s)	288, 343
BsiHKCI	CYCGRG	1 cut(s)	1115
BsiSI	CCGG	1 cut(s)	974
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	4 cut(s)	99, 135, 1103, 1274
BsmAI	GTCTC	2 cut(s)	24, 541
BsmBI	CGTCTC	2 cut(s)	24, 541
BsmFI	GGGAC	1 cut(s)	198
BsmI	GAATGC	2 cut(s)	679, 926
BsnI	GGCC	2 cut(s)	303, 1278
BsoBI	CYCGRG	1 cut(s)	1115
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	4 cut(s)	336, 468, 474, 1257
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	2 cut(s)	126, 1039
BspANI	GGCC	2 cut(s)	303, 1278
BspCNI	CTCAG	5 cut(s)	162, 662, 745, 1293, 1310
BspFNI	CGCG	2 cut(s)	35, 311
BspHI	TCATGA	3 cut(s)	421, 471, 882
BspLI	GGNNCC	4 cut(s)	186, 267, 290, 345
BspMI	ACCTGC	1 cut(s)	695
BspPI	GGATC	3 cut(s)	344, 476, 1252
BspT107I	GGYRCC	2 cut(s)	288, 343
BsrDI	GCAATG	3 cut(s)	780, 915, 975
BsrFI	RCCGGY	1 cut(s)	973
BsrGI	TGTACA	1 cut(s)	384
BssAI	RCCGGY	1 cut(s)	973
BssECI	CCNNGG	4 cut(s)	27, 129, 269, 591
BssMI	GATC	4 cut(s)	336, 468, 474, 1257
BssSI	CACGAG	1 cut(s)	257
BssT1I	CCWWGG	2 cut(s)	27, 129
Bst2BI	CACGAG	1 cut(s)	257
Bst2UI	CCWGG	2 cut(s)	189, 270
Bst4CI	ACNGT	1 cut(s)	863
Bst6I	CTCTTC	1 cut(s)	269
BstAPI	GCANNNNNTGC	2 cut(s)	247, 441
BstAUI	TGTACA	1 cut(s)	384
BstDEI	CTNAG	5 cut(s)	149, 649, 753, 1280, 1297
BstDSI	CCRYGG	1 cut(s)	129
BstEII	GGTNACC	1 cut(s)	66
BstF5I	GGATG	4 cut(s)	77, 185, 610, 1092
BstFNI	CGCG	2 cut(s)	35, 311
BstKTI	GATC	4 cut(s)	339, 471, 477, 1260
BstMAI	GTCTC	2 cut(s)	24, 541
BstMBI	GATC	4 cut(s)	336, 468, 474, 1257
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 441
BstNI	CCWGG	2 cut(s)	189, 270
BstNSI	RCATGY	1 cut(s)	988
BstPI	GGTNACC	1 cut(s)	66
BstSCI	CCNGG	2 cut(s)	187, 268
BstUI	CGCG	2 cut(s)	35, 311
BstV1I	GCAGC	2 cut(s)	532, 535
BstXI	CCANNNNNNTGG	1 cut(s)	947
Bsu36I	CCTNAGG	1 cut(s)	649
BsuRI	GGCC	2 cut(s)	303, 1278
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	4 cut(s)	77, 185, 610, 1092
BtsIMutI	CAGTG	1 cut(s)	868
BveI	ACCTGC	1 cut(s)	695
CciI	TCATGA	3 cut(s)	421, 471, 882
Cfr10I	RCCGGY	1 cut(s)	973
Cfr13I	GGNCC	1 cut(s)	185
CseI	GACGC	2 cut(s)	24, 41
Csp6I	GTAC	5 cut(s)	103, 146, 289, 385, 1053
CviQI	GTAC	5 cut(s)	103, 146, 289, 385, 1053
DdeI	CTNAG	5 cut(s)	149, 649, 753, 1280, 1297
DpnI	GATC	4 cut(s)	338, 470, 476, 1259
DpnII	GATC	4 cut(s)	336, 468, 474, 1257
DriI	GACNNNNNGTC	1 cut(s)	628
Eam1104I	CTCTTC	1 cut(s)	269
Eam1105I	GACNNNNNGTC	1 cut(s)	628
EarI	CTCTTC	1 cut(s)	269
Eco130I	CCWWGG	2 cut(s)	27, 129
Eco47I	GGWCC	1 cut(s)	185
Eco81I	CCTNAGG	1 cut(s)	649
Eco88I	CYCGRG	1 cut(s)	1115
Eco91I	GGTNACC	1 cut(s)	66
EcoO109I	RGGNCCY	1 cut(s)	185
EcoO65I	GGTNACC	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	1313
EcoRII	CCWGG	2 cut(s)	187, 268
EcoT14I	CCWWGG	2 cut(s)	27, 129
EcoT22I	ATGCAT	2 cut(s)	1094, 1169
ErhI	CCWWGG	2 cut(s)	27, 129
Esp3I	CGTCTC	2 cut(s)	24, 541
FaqI	GGGAC	1 cut(s)	198
FauNDI	CATATG	2 cut(s)	815, 1088
FblI	GTMKAC	2 cut(s)	57, 621
Fnu4HI	GCNGC	2 cut(s)	546, 549
FokI	GGATG	4 cut(s)	64, 192, 597, 1079
Fsp4HI	GCNGC	2 cut(s)	546, 549
FspBI	CTAG	4 cut(s)	84, 633, 680, 1262
GluI	GCNGC	2 cut(s)	546, 549
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	303, 1278
HapII	CCGG	1 cut(s)	974
HgaI	GACGC	2 cut(s)	24, 41
HinfI	GANTC	1 cut(s)	1131
HpaII	CCGG	1 cut(s)	974
HphI	GGTGA	2 cut(s)	115, 607
Hpy166II	GTNNAC	6 cut(s)	39, 58, 146, 385, 622, 868
Hpy188I	TCNGA	3 cut(s)	329, 1127, 1283
Hpy8I	GTNNAC	6 cut(s)	39, 58, 146, 385, 622, 868
HpyAV	CCTTC	4 cut(s)	437, 753, 1035, 1039
HpyCH4III	ACNGT	1 cut(s)	863
HpyCH4IV	ACGT	2 cut(s)	714, 887
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 441
HpyF3I	CTNAG	5 cut(s)	149, 649, 753, 1280, 1297
HpySE526I	ACGT	2 cut(s)	714, 887
KpnI	GGTACC	1 cut(s)	292
Kzo9I	GATC	4 cut(s)	336, 468, 474, 1257
LmnI	GCTCC	2 cut(s)	1027, 1270
Lsp1109I	GCAGC	2 cut(s)	532, 535
LweI	GCATC	3 cut(s)	647, 1101, 1176
MaeI	CTAG	4 cut(s)	84, 633, 680, 1262
MaeII	ACGT	2 cut(s)	714, 887
MaeIII	GTNAC	5 cut(s)	66, 121, 193, 391, 707
MalI	GATC	4 cut(s)	338, 470, 476, 1259
MboI	GATC	4 cut(s)	336, 468, 474, 1257
MboII	GAAGA	6 cut(s)	61, 286, 469, 610, 1021, 1309
MluCI	AATT	5 cut(s)	296, 417, 514, 1222, 1313
MluI	ACGCGT	2 cut(s)	33, 309
MmeI	TCCRAC	3 cut(s)	47, 702, 870
MnlI	CCTC	7 cut(s)	91, 270, 392, 601, 658, 1121, 1289
Mph1103I	ATGCAT	2 cut(s)	1094, 1169
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	2 cut(s)	519, 1221
MslI	CAYNNNNRTG	2 cut(s)	128, 615
MspI	CCGG	1 cut(s)	974
MspR9I	CCNGG	2 cut(s)	189, 270
Mva1269I	GAATGC	2 cut(s)	679, 926
MvaI	CCWGG	2 cut(s)	189, 270
MvnI	CGCG	2 cut(s)	35, 311
MwoI	GCNNNNNNNGC	2 cut(s)	247, 441
NcoI	CCATGG	1 cut(s)	129
NdeI	CATATG	2 cut(s)	815, 1088
NdeII	GATC	4 cut(s)	336, 468, 474, 1257
NlaIV	GGNNCC	4 cut(s)	186, 267, 290, 345
NmuCI	GTSAC	3 cut(s)	121, 193, 707
NsiI	ATGCAT	2 cut(s)	1094, 1169
NspI	RCATGY	1 cut(s)	988
PagI	TCATGA	3 cut(s)	421, 471, 882
PctI	GAATGC	2 cut(s)	679, 926
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	1131
PflMI	CCANNNNNTGG	2 cut(s)	99, 1103
PkrI	GCNGC	2 cut(s)	547, 550
PpuMI	RGGWCCY	1 cut(s)	185
PshBI	ATTAAT	1 cut(s)	1221
Psp1406I	AACGTT	1 cut(s)	714
Psp5II	RGGWCCY	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	187, 268
PspEI	GGTNACC	1 cut(s)	66
PspGI	CCWGG	2 cut(s)	187, 268
PspN4I	GGNNCC	4 cut(s)	186, 267, 290, 345
PspPI	GGNCC	1 cut(s)	185
PspPPI	RGGWCCY	1 cut(s)	185
RsaI	GTAC	5 cut(s)	104, 147, 290, 386, 1054
RsaNI	GTAC	5 cut(s)	103, 146, 289, 385, 1053
RseI	CAYNNNNRTG	2 cut(s)	128, 615
SaqAI	TTAA	2 cut(s)	519, 1221
SatI	GCNGC	2 cut(s)	546, 549
Sau3AI	GATC	4 cut(s)	336, 468, 474, 1257
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	189, 270
SfaNI	GCATC	3 cut(s)	647, 1101, 1176
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	2 cut(s)	128, 615
Sse9I	AATT	5 cut(s)	296, 417, 514, 1222, 1313
SsiI	CCGC	2 cut(s)	126, 1039
SspI	AATATT	1 cut(s)	877
SspMI	CTAG	4 cut(s)	84, 633, 680, 1262
StyD4I	CCNGG	2 cut(s)	187, 268
StyI	CCWWGG	2 cut(s)	27, 129
TaaI	ACNGT	1 cut(s)	863
TaiI	ACGT	2 cut(s)	717, 890
TaqI	TCGA	3 cut(s)	282, 572, 990
TasI	AATT	5 cut(s)	296, 417, 514, 1222, 1313
TatI	WGTACW	2 cut(s)	145, 384
TfiI	GAWTC	1 cut(s)	1131
Tru1I	TTAA	2 cut(s)	519, 1221
Tru9I	TTAA	2 cut(s)	519, 1221
TscAI	CASTG	1 cut(s)	868
TseFI	GTSAC	3 cut(s)	121, 193, 707
TseI	GCWGC	2 cut(s)	545, 548
Tsp45I	GTSAC	3 cut(s)	121, 193, 707
TspDTI	ATGAA	3 cut(s)	410, 599, 1033
TspRI	CASTG	1 cut(s)	868
Van91I	CCANNNNNTGG	2 cut(s)	99, 1103
VpaK11BI	GGWCC	1 cut(s)	185
VspI	ATTAAT	1 cut(s)	1221
XapI	RAATTY	2 cut(s)	417, 1313
XbaI	TCTAGA	2 cut(s)	83, 632
XceI	RCATGY	1 cut(s)	988
XcmI	CCANNNNNNNNNTGG	2 cut(s)	311, 1170
XmiI	GTMKAC	2 cut(s)	57, 621
XmnI	GAANNNNTTC	1 cut(s)	278
XspI	CTAG	4 cut(s)	84, 633, 680, 1262
Zsp2I	ATGCAT	2 cut(s)	1094, 1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.