Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006982

Physical Location & Seq

Genomic Coordinates Reverse (-)

26590045 .. 26591924

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g24390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGCTGACGAGGCTAATATGTCCGAGTCTGAGCTTGCGAGGCAGCAGAAGATCAACGATTGGCTTCCCATCACTTCTGCTAGGAATGCCAAATGGTGGTACTCAGCTTTCCATAATGTCACTGCCATGGTTGGGGCTGGTGTCCTTAGTCTTCCTTATGCACTTTCACAGCTTGGCTGGGGTCCTGGTATCGTTATCCTTATTCTGTCATGGATCATCACCTTGTACACACTATGGCAAATGGTTGAGATGCATGAAATGGTGCCTGGCAAGCGGTTCGATAGATATCACGAGCTGGGACAACAAGCCTTTGGGCCGAAGCTGGGACTCTGGATTGTGGTACCTCAACAAGTAGTTGTTGAGGTTGGTGTTTGCATAGTCTATATGGTGACAGGAGGAAAATCATTGAAGAAAGTCCATGATGTGCTTTGTCCTAGCTGCAAAGATATCAGGACTATATTCTGGATTATGATTTTCGCTTCTTGTCACTTTGTTCTCTCCCATCTCCCCAACTTCAACTCCATGTCTGTTGTCTCACTCGCCGCAGCAGTAATGTCCCTTAGTTACTCAACAATTGCATGGGCAGCTTCATTACACAAGGGGAGATCACCAGATGTGGACTACAGCTACAGAGCCAAAACCAATGGTGGAGCTGCGCTTAACTTCTTTGTTGGGTTAGGAGAGGTAGCATTTGCCTATGCTGGTCACAATGTGGTTCTGGAGATCCAAGCAACCATTCCTTCAACGCCGGAGAAGCCTTCCAAGGGTCCTATGTGGAAAGGAGTGATTGTGGCATACATAATCGTGGCGATATGCTACTTCCCTGTTGCTATTGCTGGGTTTTATGTCTACGGGAACACCGTTGATGAGAACATCCTCATCTCGCTGGAGAAACCGGCCTGGCTAATTGCAGCTGCTAACTTGTTCGTTGTGGTTCATGTGATTGGAAGCTATCAGATATATGCAATGGGGGTGTTTGACATGATTGAAACGTTTTTGGTCAAGAAAATGAACTTGCCACCGAGTTTCATTCTCCGCTTTGTTACTAGAACTACATATGTTGCGGTTACTATGGTTGTTGCCATGGCAATCCCTTTCTTCAGTGGCCTTCTCGCATTCTTTGGAGGATTCGCTTTCGCCCCAACAACATATTTTCTTCCCTGCATCATGTGGCTTGCCATCTACAAACCGAGACCATTCACTCTATCTTGGTTTGCTAACTGGATCTGTATCATTCTTGGGGTTACTTTGATGATTCTAGCTCCTATTGGTGCACTAAGGAACATTGTCAAAAAAGCGAAAACCTATGAGTTCTTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

441

Amino Acids

48.92

Weight (kDa)

9.0

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	29 - 425	2.2e-104	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	34 - 162	9.8e-09	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24400 AT1G67640
fragaria_vesca	FvH4_4g24381 FvH4_4g24381 FvH4_4g24390
malus_domestica	MD13G1111700.v1.1 MD16G1111300.v1.1
prunus_persica	Prupe.1G233800_v2.0.a1
pyrus_communis	pycom16g09430
rosa_chinensis	RchiOBHm_Chr4g0431231 RchiOBHm_Chr4g0431241
rosa_laevigata	RLG00000006916 RLG00000006917
rosa_multiflora	Rmu_sc0005258.1_g000008 Rmu_sc0039160.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372770 Rroxscaffold_5G00372780
rosa_rugosa	Rorug04G0249400 Rorug04G0249500 Rorug04G0249600
rosa_samantha	Rh4AG305500 Rh4BG312800 Rh4BG312900
rosa_wichuraiana	Rw4G026550 Rw4G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	340
AccB1I	GGYRCC	2 cut(s)	262, 340
AccB7I	CCANNNNNTGG	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	849
AciI	CCGC	4 cut(s)	274, 543, 1036, 1064
AclI	AACGTT	1 cut(s)	992
AclWI	GGATC	3 cut(s)	221, 718, 1232
AcuI	CTGAAG	1 cut(s)	1084
AdeI	CACNNNGTG	1 cut(s)	712
AfaI	GTAC	3 cut(s)	101, 227, 342
AfiI	CCNNNNNNNGG	4 cut(s)	96, 132, 323, 764
AgsI	TTSAA	4 cut(s)	409, 517, 744, 989
AjnI	CCWGG	3 cut(s)	184, 265, 899
AjuI	GAANNNNNNNTTGG	2 cut(s)	720, 752
Alw21I	GWGCWC	1 cut(s)	1276
Alw26I	GTCTC	2 cut(s)	538, 1186
Alw44I	GTGCAC	1 cut(s)	1272
AlwI	GGATC	3 cut(s)	221, 718, 1232
AoxI	GGCC	3 cut(s)	314, 897, 1105
ApaLI	GTGCAC	1 cut(s)	1272
ApeKI	GCWGC	7 cut(s)	43, 438, 545, 584, 653, 911, 914
Asp718I	GGTACC	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	658
AspS9I	GGNCC	3 cut(s)	182, 314, 767
AsuHPI	GGTGA	3 cut(s)	211, 400, 600
AvaII	GGWCC	2 cut(s)	182, 767
BaeGI	GKGCMC	1 cut(s)	1276
BanI	GGYRCC	2 cut(s)	262, 340
BauI	CACGAG	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	1276
BbvI	GCAGC	7 cut(s)	55, 425, 557, 596, 640, 901, 923
BccI	CCATC	3 cut(s)	77, 510, 1187
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	3 cut(s)	186, 267, 901
BcoDI	GTCTC	2 cut(s)	538, 1186
BfaI	CTAG	4 cut(s)	81, 435, 1047, 1259
BfmI	CTRYAG	2 cut(s)	622, 628
BisI	GCNGC	8 cut(s)	44, 439, 543, 546, 585, 654, 912, 915
BlsI	GCNGC	8 cut(s)	45, 440, 544, 547, 586, 655, 913, 916
Bme1390I	CCNGG	3 cut(s)	186, 267, 901
Bme18I	GGWCC	2 cut(s)	182, 767
BmgT120I	GGNCC	3 cut(s)	182, 314, 767
BmiI	GGNNCC	4 cut(s)	183, 264, 342, 768
BmrFI	CCNGG	3 cut(s)	186, 267, 901
BmsI	GCATC	2 cut(s)	240, 1173
BpiI	GAAGAC	1 cut(s)	143
BplI	GAGNNNNNCTC	1 cut(s)	1301
BpmI	CTGGAG	2 cut(s)	740, 908
BsaBI	GATNNNNATC	2 cut(s)	285, 1229
BsaI	GGTCTC	1 cut(s)	1186
BsaJI	CCNNGG	3 cut(s)	126, 762, 1083
BsaXI	ACNNNNNCTCC	4 cut(s)	503, 533, 774, 804
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 132, 323, 764
Bse118I	RCCGGY	1 cut(s)	895
Bse1I	ACTGG	1 cut(s)	1226
Bse3DI	GCAATG	1 cut(s)	972
Bse8I	GATNNNNATC	2 cut(s)	285, 1229
BseBI	CCWGG	3 cut(s)	186, 267, 901
BseDI	CCNNGG	3 cut(s)	126, 762, 1083
BseGI	GGATG	1 cut(s)	873
BseJI	GATNNNNATC	2 cut(s)	285, 1229
BseLI	CCNNNNNNNGG	4 cut(s)	96, 132, 323, 764
BseMI	GCAATG	1 cut(s)	972
BseMII	CTCAG	2 cut(s)	21, 117
BseNI	ACTGG	1 cut(s)	1226
BseSI	GKGCMC	1 cut(s)	1276
BseXI	GCAGC	7 cut(s)	55, 425, 557, 596, 640, 901, 923
BseYI	CCCAGC	4 cut(s)	177, 295, 322, 836
BshFI	GGCC	3 cut(s)	316, 899, 1107
BshNI	GGYRCC	2 cut(s)	262, 340
BsiHKAI	GWGCWC	1 cut(s)	1276
BsiSI	CCGG	2 cut(s)	749, 896
BslFI	GGGAC	3 cut(s)	312, 339, 541
BslI	CCNNNNNNNGG	4 cut(s)	96, 132, 323, 764
BsmAI	GTCTC	2 cut(s)	538, 1186
BsmFI	GGGAC	3 cut(s)	312, 339, 541
BsmI	GAATGC	2 cut(s)	91, 1115
BsnI	GGCC	3 cut(s)	316, 899, 1107
Bso31I	GGTCTC	1 cut(s)	1186
Bsp1286I	GDGCHC	1 cut(s)	1276
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	5 cut(s)	51, 213, 605, 723, 1224
Bsp19I	CCATGG	2 cut(s)	126, 1083
BspACI	CCGC	4 cut(s)	274, 543, 1036, 1064
BspANI	GGCC	3 cut(s)	316, 899, 1107
BspCNI	CTCAG	2 cut(s)	22, 116
BspLI	GGNNCC	4 cut(s)	183, 264, 342, 768
BspPI	GGATC	3 cut(s)	221, 718, 1232
BspT107I	GGYRCC	2 cut(s)	262, 340
BspTNI	GGTCTC	1 cut(s)	1186
BsrDI	GCAATG	1 cut(s)	972
BsrFI	RCCGGY	1 cut(s)	895
BsrGI	TGTACA	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	1226
BssAI	RCCGGY	1 cut(s)	895
BssECI	CCNNGG	3 cut(s)	126, 762, 1083
BssMI	GATC	5 cut(s)	51, 213, 605, 723, 1224
BssSI	CACGAG	1 cut(s)	290
BssT1I	CCWWGG	3 cut(s)	126, 762, 1083
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	3 cut(s)	186, 267, 901
Bst4CI	ACNGT	1 cut(s)	862
BstAUI	TGTACA	1 cut(s)	225
BstC8I	GCNNGC	3 cut(s)	36, 272, 1176
BstDEI	CTNAG	5 cut(s)	30, 103, 146, 560, 1277
BstDSI	CCRYGG	2 cut(s)	126, 1083
BstF5I	GGATG	1 cut(s)	873
BstHHI	GCGC	1 cut(s)	658
BstKTI	GATC	5 cut(s)	54, 216, 608, 726, 1227
BstMAI	GTCTC	2 cut(s)	538, 1186
BstMBI	GATC	5 cut(s)	51, 213, 605, 723, 1224
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 40, 86, 271, 584, 754
BstNI	CCWGG	3 cut(s)	186, 267, 901
BstSCI	CCNGG	3 cut(s)	184, 265, 899
BstSFI	CTRYAG	2 cut(s)	622, 628
BstSLI	GKGCMC	1 cut(s)	1276
BstV1I	GCAGC	7 cut(s)	55, 425, 557, 596, 640, 901, 923
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	2 cut(s)	723, 1224
BstYI	RGATCY	2 cut(s)	723, 1224
BsuRI	GGCC	3 cut(s)	316, 899, 1107
BtgI	CCRYGG	2 cut(s)	126, 1083
BtsCI	GGATG	1 cut(s)	873
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	120, 1108
Cac8I	GCNNGC	3 cut(s)	36, 272, 1176
CfoI	GCGC	1 cut(s)	658
Cfr10I	RCCGGY	1 cut(s)	895
Cfr13I	GGNCC	3 cut(s)	182, 314, 767
Csp6I	GTAC	3 cut(s)	100, 226, 341
CviQI	GTAC	3 cut(s)	100, 226, 341
DdeI	CTNAG	5 cut(s)	30, 103, 146, 560, 1277
DpnI	GATC	5 cut(s)	53, 215, 607, 725, 1226
DpnII	GATC	5 cut(s)	51, 213, 605, 723, 1224
DraIII	CACNNNGTG	1 cut(s)	712
Eco130I	CCWWGG	3 cut(s)	126, 762, 1083
Eco31I	GGTCTC	1 cut(s)	1186
Eco32I	GATATC	2 cut(s)	287, 448
Eco47I	GGWCC	2 cut(s)	182, 767
Eco57I	CTGAAG	1 cut(s)	1084
EcoO109I	RGGNCCY	2 cut(s)	182, 767
EcoRII	CCWGG	3 cut(s)	184, 265, 899
EcoRV	GATATC	2 cut(s)	287, 448
EcoT14I	CCWWGG	3 cut(s)	126, 762, 1083
EcoT22I	ATGCAT	1 cut(s)	255
ErhI	CCWWGG	3 cut(s)	126, 762, 1083
FaqI	GGGAC	3 cut(s)	312, 339, 541
FauNDI	CATATG	1 cut(s)	1057
FblI	GTMKAC	1 cut(s)	849
Fnu4HI	GCNGC	8 cut(s)	44, 439, 543, 546, 585, 654, 912, 915
FokI	GGATG	1 cut(s)	860
Fsp4HI	GCNGC	8 cut(s)	44, 439, 543, 546, 585, 654, 912, 915
FspBI	CTAG	4 cut(s)	81, 435, 1047, 1259
GlaI	GCGC	1 cut(s)	657
GluI	GCNGC	8 cut(s)	44, 439, 543, 546, 585, 654, 912, 915
GsaI	CCCAGC	4 cut(s)	181, 299, 326, 840
GsuI	CTGGAG	2 cut(s)	740, 908
HaeIII	GGCC	3 cut(s)	316, 899, 1107
HapII	CCGG	2 cut(s)	749, 896
HhaI	GCGC	1 cut(s)	658
Hin6I	GCGC	1 cut(s)	656
HinP1I	GCGC	1 cut(s)	656
HinfI	GANTC	4 cut(s)	26, 327, 1128, 1255
HpaII	CCGG	2 cut(s)	749, 896
HphI	GGTGA	3 cut(s)	211, 400, 600
Hpy166II	GTNNAC	4 cut(s)	228, 619, 850, 1274
Hpy188I	TCNGA	3 cut(s)	25, 31, 957
Hpy188III	TCNNGA	6 cut(s)	290, 331, 451, 463, 719, 1003
Hpy8I	GTNNAC	4 cut(s)	228, 619, 850, 1274
HpyAV	CCTTC	3 cut(s)	750, 768, 1118
HpyCH4III	ACNGT	1 cut(s)	862
HpyCH4IV	ACGT	1 cut(s)	992
HpyCH4V	TGCA	9 cut(s)	161, 253, 375, 441, 578, 911, 965, 1164, 1274
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 40, 86, 271, 584, 754
HpyF3I	CTNAG	5 cut(s)	30, 103, 146, 560, 1277
HpySE526I	ACGT	1 cut(s)	992
HspAI	GCGC	1 cut(s)	656
KpnI	GGTACC	1 cut(s)	344
Kzo9I	GATC	5 cut(s)	51, 213, 605, 723, 1224
LmnI	GCTCC	2 cut(s)	650, 1267
Lsp1109I	GCAGC	7 cut(s)	55, 425, 557, 596, 640, 901, 923
LweI	GCATC	2 cut(s)	240, 1173
MaeI	CTAG	4 cut(s)	81, 435, 1047, 1259
MaeII	ACGT	1 cut(s)	992
MaeIII	GTNAC	8 cut(s)	118, 388, 485, 563, 704, 1042, 1066, 1243
MalI	GATC	5 cut(s)	53, 215, 607, 725, 1226
MboI	GATC	5 cut(s)	51, 213, 605, 723, 1224
MboII	GAAGA	6 cut(s)	61, 143, 421, 1090, 1148, 1306
MfeI	CAATTG	1 cut(s)	573
MflI	RGATCY	2 cut(s)	723, 1224
MhlI	GDGCHC	1 cut(s)	1276
MluCI	AATT	2 cut(s)	573, 906
MlyI	GAGTC	2 cut(s)	35, 321
MnlI	CCTC	8 cut(s)	4, 33, 354, 355, 389, 676, 887, 1118
Mph1103I	ATGCAT	1 cut(s)	255
MseI	TTAA	2 cut(s)	660, 1321
MslI	CAYNNNNRTG	2 cut(s)	125, 803
MspA1I	CMGCKG	1 cut(s)	914
MspI	CCGG	2 cut(s)	749, 896
MspR9I	CCNGG	3 cut(s)	186, 267, 901
MunI	CAATTG	1 cut(s)	573
Mva1269I	GAATGC	2 cut(s)	91, 1115
MvaI	CCWGG	3 cut(s)	186, 267, 901
MwoI	GCNNNNNNNGC	6 cut(s)	11, 40, 86, 271, 584, 754
NcoI	CCATGG	2 cut(s)	126, 1083
NdeI	CATATG	1 cut(s)	1057
NdeII	GATC	5 cut(s)	51, 213, 605, 723, 1224
NlaIV	GGNNCC	4 cut(s)	183, 264, 342, 768
NmuCI	GTSAC	4 cut(s)	118, 388, 485, 704
NsiI	ATGCAT	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	858
PctI	GAATGC	2 cut(s)	91, 1115
PfeI	GAWTC	2 cut(s)	1128, 1255
PflMI	CCANNNNNTGG	1 cut(s)	96
PkrI	GCNGC	8 cut(s)	45, 440, 544, 547, 586, 655, 913, 916
PleI	GAGTC	2 cut(s)	34, 321
PpsI	GAGTC	2 cut(s)	34, 321
PpuMI	RGGWCCY	2 cut(s)	182, 767
Psp1406I	AACGTT	1 cut(s)	992
Psp5II	RGGWCCY	2 cut(s)	182, 767
Psp6I	CCWGG	3 cut(s)	184, 265, 899
PspFI	CCCAGC	4 cut(s)	177, 295, 322, 836
PspGI	CCWGG	3 cut(s)	184, 265, 899
PspN4I	GGNNCC	4 cut(s)	183, 264, 342, 768
PspPI	GGNCC	3 cut(s)	182, 314, 767
PspPPI	RGGWCCY	2 cut(s)	182, 767
PsuI	RGATCY	2 cut(s)	723, 1224
PvuII	CAGCTG	1 cut(s)	914
RsaI	GTAC	3 cut(s)	101, 227, 342
RsaNI	GTAC	3 cut(s)	100, 226, 341
RseI	CAYNNNNRTG	2 cut(s)	125, 803
SaqAI	TTAA	2 cut(s)	660, 1321
SatI	GCNGC	8 cut(s)	44, 439, 543, 546, 585, 654, 912, 915
Sau3AI	GATC	5 cut(s)	51, 213, 605, 723, 1224
Sau96I	GGNCC	3 cut(s)	182, 314, 767
SchI	GAGTC	2 cut(s)	35, 321
ScrFI	CCNGG	3 cut(s)	186, 267, 901
SduI	GDGCHC	1 cut(s)	1276
SfaNI	GCATC	2 cut(s)	240, 1173
SfcI	CTRYAG	2 cut(s)	622, 628
SinI	GGWCC	2 cut(s)	182, 767
SmiMI	CAYNNNNRTG	2 cut(s)	125, 803
Sse9I	AATT	2 cut(s)	573, 906
SsiI	CCGC	4 cut(s)	274, 543, 1036, 1064
SspMI	CTAG	4 cut(s)	81, 435, 1047, 1259
StyD4I	CCNGG	3 cut(s)	184, 265, 899
StyI	CCWWGG	3 cut(s)	126, 762, 1083
TaaI	ACNGT	1 cut(s)	862
TaiI	ACGT	1 cut(s)	995
TaqI	TCGA	1 cut(s)	279
TasI	AATT	2 cut(s)	573, 906
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	1 cut(s)	545
TfiI	GAWTC	2 cut(s)	1128, 1255
Tru1I	TTAA	2 cut(s)	660, 1321
Tru9I	TTAA	2 cut(s)	660, 1321
TscAI	CASTG	2 cut(s)	127, 1108
TseFI	GTSAC	4 cut(s)	118, 388, 485, 704
TseI	GCWGC	7 cut(s)	43, 438, 545, 584, 653, 911, 914
Tsp45I	GTSAC	4 cut(s)	118, 388, 485, 704
TspDTI	ATGAA	5 cut(s)	270, 579, 926, 1018, 1025
TspRI	CASTG	2 cut(s)	127, 1108
Van91I	CCANNNNNTGG	1 cut(s)	96
VneI	GTGCAC	1 cut(s)	1272
VpaK11BI	GGWCC	2 cut(s)	182, 767
XmiI	GTMKAC	1 cut(s)	849
XspI	CTAG	4 cut(s)	81, 435, 1047, 1259
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.