Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006982

Physical Location & Seq

Genomic Coordinates Reverse (-)

54119475 .. 54122020

Gene Structure 2546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGTCGAGGGTACTGACACAGATGTTGAGCTTGCAAGACAGAAAAAGATCGACGATTGGCTTCCCATCACTTCGGCTAGGAATGCCAAATGGTGGTACTCGGCTTTCCACAATGTCACTGCCATGGTTGGGGCTGGTGTCCTTAGTCTTCCTTTTGCCCTGGCAGAGCTTGGCTGGGGTCCTGGTGTGGTTATCCTTATTTTGTCATGGGTCATCACCCTATACACACTATGGCAAATGGTTGAGATGCATGAAATGGTGCCTGGCAAGCGGTTCGATAGGTATCACGAGCTGGGTCAACATGCCTTTGGGCCGAAGCTAGGGCTCTGGATTGTGGTGCCCCAACAGGTAGTTGTTGAGGTTGGTGTTTGCATAGTCTATATGGTGACAGGAGGAAAATCATTGAAGAAAGTCCATGATGTGCTTTGCCCTAGCTGCCAAGATATCAAGACCACATACTGGATTATGATTTTCGCTTCTTCTCACTTTGTGCTCTCCCATCTCCCCAACTTCAACTCCATGTCTGGTATCTCACTTGCCGCAGCAATCATGTCCTTAAGTTACTCAACTATTGCATGGACAGCTTCATTACACAAGGGGGTCATACCAGATGTGGACTACAGCTACAGAGCCAAAAATACCCCTGGAATTGTGTTTAACTTCTTTGGTGGGTTGGGTGATGTAGCATTTGCCTATGCTGGTCACAATGTGGTTCTGGAGATCCAAGCAACCATTCCTTCAACGCCGGATAAGCCTTCCAAGGGTCCCATGTGGAAAGGAGTGGTTGTGGCATACATAGTTGTGGCTCTATGCTACTTCCCTGTTGCTATTATTGGGTTTTATATCTTCGGAAACAGGGTTGAAGACAACCTCCTCATGTCGCTGGAGAAACCAGCTTGGCTAATTGCAGCTGCTAACCTGTTTGTCGTGGTTCATGTCATTGGAAGCTATCAGGTATTTGCAATGGGGGTGTTTGACATGCTTGAAACCTTTTTGGTCATGAAAATGAACTTCAAACCCAGTTTTGTCCTCCGCTTTGTTACTCGAACTACATATGTTGCAATTACTATGTTCATTGGCATTGCAATCCCTTTCTTCGGTGGCCTTCTTGGATTCTTTGGGGGATTTGCTTTCGCCCCAACAACATATTTCCTTCCCTGCATCATGTGGCTTGCCCTCTACAAACCGAAACCATTCAGTCTATCTTGGTGTGCAAACTGGTTTTGTATCATTCTTGGCGTTGCTCTGATGATTCTAGCTCCCATCGGTGCACTAAGGAACATCATCCTCCAAGCCAAAACCTACAAGTTCTTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

439

Amino Acids

48.8

Weight (kDa)

8.81

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	28 - 424	2.3e-105	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	33 - 143	1.4e-08	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24400 AT1G67640
fragaria_vesca	FvH4_4g24381 FvH4_4g24381 FvH4_4g24390
malus_domestica	MD13G1111700.v1.1 MD16G1111300.v1.1
prunus_persica	Prupe.1G233800_v2.0.a1
pyrus_communis	pycom16g09430
rosa_chinensis	RchiOBHm_Chr4g0431231 RchiOBHm_Chr4g0431241
rosa_laevigata	RLG00000006916 RLG00000006917
rosa_multiflora	Rmu_sc0005258.1_g000008 Rmu_sc0039160.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372770 Rroxscaffold_5G00372780
rosa_rugosa	Rorug04G0249400 Rorug04G0249500 Rorug04G0249600
rosa_samantha	Rh4AG305500 Rh4BG312800 Rh4BG312900
rosa_wichuraiana	Rw4G026550 Rw4G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	259, 337
AccB7I	CCANNNNNTGG	2 cut(s)	93, 459
AciI	CCGC	3 cut(s)	271, 540, 1033
AclWI	GGATC	1 cut(s)	715
AdeI	CACNNNGTG	2 cut(s)	490, 709
AfaI	GTAC	2 cut(s)	13, 98
AfiI	CCNNNNNNNGG	6 cut(s)	93, 129, 320, 459, 761, 1097
AflII	CTTAAG	1 cut(s)	556
AgsI	TTSAA	6 cut(s)	406, 514, 741, 863, 986, 1015
AjnI	CCWGG	4 cut(s)	159, 181, 262, 643
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
Alw21I	GWGCWC	2 cut(s)	495, 1273
Alw44I	GTGCAC	1 cut(s)	1269
AlwI	GGATC	1 cut(s)	715
AoxI	GGCC	2 cut(s)	311, 1102
ApaLI	GTGCAC	1 cut(s)	1269
ApeKI	GCWGC	4 cut(s)	435, 542, 908, 911
Asp700I	GAANNNNTTC	1 cut(s)	1193
AspS9I	GGNCC	3 cut(s)	179, 311, 764
AsuHPI	GGTGA	3 cut(s)	208, 397, 689
AvaII	GGWCC	2 cut(s)	179, 764
BaeGI	GKGCMC	2 cut(s)	342, 1273
BanI	GGYRCC	2 cut(s)	259, 337
BanII	GRGCYC	1 cut(s)	327
BauI	CACGAG	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	140, 870
Bbv12I	GWGCWC	2 cut(s)	495, 1273
BbvI	GCAGC	4 cut(s)	422, 554, 898, 920
BccI	CCATC	3 cut(s)	74, 507, 1271
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	4 cut(s)	161, 183, 264, 645
BfaI	CTAG	4 cut(s)	78, 320, 432, 1256
BfmI	CTRYAG	2 cut(s)	619, 625
BfrI	CTTAAG	1 cut(s)	556
BisI	GCNGC	5 cut(s)	436, 540, 543, 909, 912
BlsI	GCNGC	5 cut(s)	437, 541, 544, 910, 913
Bme1390I	CCNGG	4 cut(s)	161, 183, 264, 645
Bme18I	GGWCC	2 cut(s)	179, 764
BmgT120I	GGNCC	3 cut(s)	179, 311, 764
BmiI	GGNNCC	5 cut(s)	180, 261, 339, 765, 766
BmrFI	CCNGG	4 cut(s)	161, 183, 264, 645
BmrI	ACTGGG	1 cut(s)	1014
BmsI	GCATC	2 cut(s)	237, 1170
BmuI	ACTGGG	1 cut(s)	1014
BpiI	GAAGAC	2 cut(s)	140, 870
BpmI	CTGGAG	2 cut(s)	737, 905
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	4 cut(s)	123, 159, 643, 759
BsaXI	ACNNNNNCTCC	4 cut(s)	500, 530, 771, 801
Bsc4I	CCNNNNNNNGG	6 cut(s)	93, 129, 320, 459, 761, 1097
Bse1I	ACTGG	3 cut(s)	464, 1020, 1223
Bse3DI	GCAATG	2 cut(s)	969, 1080
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	4 cut(s)	161, 183, 264, 645
BseDI	CCNNGG	4 cut(s)	123, 159, 643, 759
BseGI	GGATG	1 cut(s)	1284
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	6 cut(s)	93, 129, 320, 459, 761, 1097
BseMI	GCAATG	2 cut(s)	969, 1080
BseNI	ACTGG	3 cut(s)	464, 1020, 1223
BseRI	GAGGAG	1 cut(s)	863
BseSI	GKGCMC	2 cut(s)	342, 1273
BseXI	GCAGC	4 cut(s)	422, 554, 898, 920
BseYI	CCCAGC	2 cut(s)	174, 292
BshFI	GGCC	2 cut(s)	313, 1104
BshNI	GGYRCC	2 cut(s)	259, 337
BsiHKAI	GWGCWC	2 cut(s)	495, 1273
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	6 cut(s)	93, 129, 320, 459, 761, 1097
BsmFI	GGGAC	1 cut(s)	750
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	313, 1104
Bsp1286I	GDGCHC	4 cut(s)	327, 342, 495, 1273
Bsp143I	GATC	2 cut(s)	48, 720
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	3 cut(s)	271, 540, 1033
BspANI	GGCC	2 cut(s)	313, 1104
BspHI	TCATGA	1 cut(s)	999
BspLI	GGNNCC	5 cut(s)	180, 261, 339, 765, 766
BspPI	GGATC	1 cut(s)	715
BspT107I	GGYRCC	2 cut(s)	259, 337
BspTI	CTTAAG	1 cut(s)	556
BsrDI	GCAATG	2 cut(s)	969, 1080
BsrI	ACTGG	3 cut(s)	464, 1020, 1223
BssECI	CCNNGG	4 cut(s)	123, 159, 643, 759
BssMI	GATC	2 cut(s)	48, 720
BssSI	CACGAG	1 cut(s)	287
BssT1I	CCWWGG	2 cut(s)	123, 759
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	4 cut(s)	161, 183, 264, 645
BstAFI	CTTAAG	1 cut(s)	556
BstC8I	GCNNGC	3 cut(s)	33, 269, 1173
BstDEI	CTNAG	2 cut(s)	143, 1274
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	1284
BstKTI	GATC	2 cut(s)	51, 723
BstMBI	GATC	2 cut(s)	48, 720
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 268, 435, 581, 751
BstNI	CCWGG	4 cut(s)	161, 183, 264, 645
BstNSI	RCATGY	2 cut(s)	305, 982
BstSCI	CCNGG	4 cut(s)	159, 181, 262, 643
BstSFI	CTRYAG	2 cut(s)	619, 625
BstSLI	GKGCMC	2 cut(s)	342, 1273
BstV1I	GCAGC	4 cut(s)	422, 554, 898, 920
BstV2I	GAAGAC	2 cut(s)	140, 870
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
BsuRI	GGCC	2 cut(s)	313, 1104
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	1284
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	3 cut(s)	33, 269, 1173
CciI	TCATGA	1 cut(s)	999
Cfr13I	GGNCC	3 cut(s)	179, 311, 764
Csp6I	GTAC	2 cut(s)	12, 97
CviQI	GTAC	2 cut(s)	12, 97
DdeI	CTNAG	2 cut(s)	143, 1274
DpnI	GATC	2 cut(s)	50, 722
DpnII	GATC	2 cut(s)	48, 720
DraIII	CACNNNGTG	2 cut(s)	490, 709
Eco130I	CCWWGG	2 cut(s)	123, 759
Eco24I	GRGCYC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	179, 764
EcoO109I	RGGNCCY	2 cut(s)	179, 764
EcoRII	CCWGG	4 cut(s)	159, 181, 262, 643
EcoRV	GATATC	1 cut(s)	445
EcoT14I	CCWWGG	2 cut(s)	123, 759
EcoT22I	ATGCAT	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	2 cut(s)	123, 759
FaqI	GGGAC	1 cut(s)	750
FauNDI	CATATG	1 cut(s)	1054
Fnu4HI	GCNGC	5 cut(s)	436, 540, 543, 909, 912
FokI	GGATG	1 cut(s)	1271
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	5 cut(s)	436, 540, 543, 909, 912
FspBI	CTAG	4 cut(s)	78, 320, 432, 1256
GluI	GCNGC	5 cut(s)	436, 540, 543, 909, 912
GsaI	CCCAGC	2 cut(s)	178, 296
GsuI	CTGGAG	2 cut(s)	737, 905
HaeIII	GGCC	2 cut(s)	313, 1104
HapII	CCGG	1 cut(s)	746
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HinfI	GANTC	2 cut(s)	1113, 1252
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	3 cut(s)	208, 397, 689
Hpy166II	GTNNAC	3 cut(s)	299, 616, 1271
Hpy188I	TCNGA	2 cut(s)	851, 1248
Hpy188III	TCNNGA	5 cut(s)	287, 328, 448, 716, 1000
Hpy8I	GTNNAC	3 cut(s)	299, 616, 1271
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	747, 765, 1115, 1163
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 268, 435, 581, 751
HpyF3I	CTNAG	2 cut(s)	143, 1274
KflI	GGGWCCC	1 cut(s)	764
Kzo9I	GATC	2 cut(s)	48, 720
LmnI	GCTCC	1 cut(s)	1264
Lsp1109I	GCAGC	4 cut(s)	422, 554, 898, 920
LweI	GCATC	2 cut(s)	237, 1170
MaeI	CTAG	4 cut(s)	78, 320, 432, 1256
MaeIII	GTNAC	5 cut(s)	115, 385, 560, 701, 1039
MalI	GATC	2 cut(s)	50, 722
MboI	GATC	2 cut(s)	48, 720
MboII	GAAGA	7 cut(s)	140, 418, 471, 838, 875, 1087, 1303
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	4 cut(s)	327, 342, 495, 1273
MluCI	AATT	3 cut(s)	648, 903, 1062
MnlI	CCTC	7 cut(s)	352, 386, 881, 884, 1040, 1187, 1298
Mph1103I	ATGCAT	1 cut(s)	252
MroXI	GAANNNNTTC	1 cut(s)	1193
MseI	TTAA	3 cut(s)	557, 657, 1318
MslI	CAYNNNNRTG	3 cut(s)	122, 800, 1004
MspA1I	CMGCKG	1 cut(s)	911
MspCI	CTTAAG	1 cut(s)	556
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	4 cut(s)	161, 183, 264, 645
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	4 cut(s)	161, 183, 264, 645
MwoI	GCNNNNNNNGC	5 cut(s)	83, 268, 435, 581, 751
NcoI	CCATGG	1 cut(s)	123
NdeI	CATATG	1 cut(s)	1054
NdeII	GATC	2 cut(s)	48, 720
NlaIV	GGNNCC	5 cut(s)	180, 261, 339, 765, 766
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	3 cut(s)	115, 385, 701
NsiI	ATGCAT	1 cut(s)	252
NspI	RCATGY	2 cut(s)	305, 982
PagI	TCATGA	1 cut(s)	999
PctI	GAATGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	1193
PfeI	GAWTC	2 cut(s)	1113, 1252
PflMI	CCANNNNNTGG	2 cut(s)	93, 459
PkrI	GCNGC	5 cut(s)	437, 541, 544, 910, 913
PpuMI	RGGWCCY	2 cut(s)	179, 764
Psp5II	RGGWCCY	2 cut(s)	179, 764
Psp6I	CCWGG	4 cut(s)	159, 181, 262, 643
PspFI	CCCAGC	2 cut(s)	174, 292
PspGI	CCWGG	4 cut(s)	159, 181, 262, 643
PspN4I	GGNNCC	5 cut(s)	180, 261, 339, 765, 766
PspPI	GGNCC	3 cut(s)	179, 311, 764
PspPPI	RGGWCCY	2 cut(s)	179, 764
PsuI	RGATCY	1 cut(s)	720
PvuII	CAGCTG	1 cut(s)	911
RsaI	GTAC	2 cut(s)	13, 98
RsaNI	GTAC	2 cut(s)	12, 97
RseI	CAYNNNNRTG	3 cut(s)	122, 800, 1004
SaqAI	TTAA	3 cut(s)	557, 657, 1318
SatI	GCNGC	5 cut(s)	436, 540, 543, 909, 912
Sau3AI	GATC	2 cut(s)	48, 720
Sau96I	GGNCC	3 cut(s)	179, 311, 764
ScrFI	CCNGG	4 cut(s)	161, 183, 264, 645
SduI	GDGCHC	4 cut(s)	327, 342, 495, 1273
SfaNI	GCATC	2 cut(s)	237, 1170
SfcI	CTRYAG	2 cut(s)	619, 625
SinI	GGWCC	2 cut(s)	179, 764
SmiMI	CAYNNNNRTG	3 cut(s)	122, 800, 1004
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
Sse9I	AATT	3 cut(s)	648, 903, 1062
SsiI	CCGC	3 cut(s)	271, 540, 1033
SspMI	CTAG	4 cut(s)	78, 320, 432, 1256
StyD4I	CCNGG	4 cut(s)	159, 181, 262, 643
StyI	CCWWGG	2 cut(s)	123, 759
TaqI	TCGA	4 cut(s)	6, 51, 276, 1045
TasI	AATT	3 cut(s)	648, 903, 1062
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	2 cut(s)	1113, 1252
Tru1I	TTAA	3 cut(s)	557, 657, 1318
Tru9I	TTAA	3 cut(s)	557, 657, 1318
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	3 cut(s)	115, 385, 701
TseI	GCWGC	4 cut(s)	435, 542, 908, 911
Tsp45I	GTSAC	3 cut(s)	115, 385, 701
TspDTI	ATGAA	6 cut(s)	267, 576, 923, 1016, 1022, 1063
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	2 cut(s)	93, 459
Vha464I	CTTAAG	1 cut(s)	556
VneI	GTGCAC	1 cut(s)	1269
VpaK11BI	GGWCC	2 cut(s)	179, 764
XceI	RCATGY	2 cut(s)	305, 982
XmnI	GAANNNNTTC	1 cut(s)	1193
XspI	CTAG	4 cut(s)	78, 320, 432, 1256
Zsp2I	ATGCAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.