Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006982

Physical Location & Seq

Genomic Coordinates Reverse (-)

42184505 .. 42186264

Gene Structure 1760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0249600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGGCTGTGGGGATTCAAAGCTCGCCGTTGCCACCAGCAACGCCCTTGTGCGCCGCAAGAAATCCAATGCCGAGGAGACCACCAAGAACAGCAAAGACATCGAAATCAACCCCAAAACAATCACAGACTGCAACAACAGCATAGCAAACTCAACGCAACAACAACAACATGAGCAAGAAGCTGCAGCAGGCCGTGGTGAACAAGTTGTTAATAAGAACAATGTGGATGGTATGGTGGCTGATGAGGTGAAGGACATTAATGAAAACAAAAAGGAAAATGGAGATGACAAAGAAATAATAGACAAAGGTGACAACCAGGTTTTAGTGGTTTCGGAGCATGAAGCCGGGAGATTTATAACATCTGAAGACTCACCAAGGGATTTCTTTTCGTCAAGGAAATTAGATGAGGAAGGGATTGATGGGATCATTTCTGAGGGAAGATCTGGAGCGTCCGATTATTACACTCCACGCCATGGACCTGGAAGTAAGGGAAACTCGTTCTTCAAGGTGGATGAGGAAAGCAAAGTTGTAGAGGAGGACAAAGAATTGTTGCCTGCTGCTGAAGAAACAAAACTAGCTGTTGAGACGACGTCCTCAACAGAAAATAAAGGAGAGCCAGCAGTACTAGTGGAGGAGAAATTGGTAAAGGAAACTGCAGAAGTGGAAATCAAAACTGCTACTGTTGAAGCCAAAGTTTCTAGCCCTGCTGCTGAGGAAGAGAAGAAAGAAGAGAAGAAAGTAGAGAAGAAAGAAGAGAAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

254

Amino Acids

27.8

Weight (kDa)

4.75

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24400 AT1G67640
fragaria_vesca	FvH4_4g24381 FvH4_4g24381 FvH4_4g24390
malus_domestica	MD13G1111700.v1.1 MD16G1111300.v1.1
prunus_persica	Prupe.1G233800_v2.0.a1
pyrus_communis	pycom16g09430
rosa_chinensis	RchiOBHm_Chr4g0431231 RchiOBHm_Chr4g0431241
rosa_laevigata	RLG00000006916 RLG00000006917
rosa_multiflora	Rmu_sc0005258.1_g000008 Rmu_sc0039160.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372770 Rroxscaffold_5G00372780
rosa_rugosa	Rorug04G0249400 Rorug04G0249500 Rorug04G0249600
rosa_samantha	Rh4AG305500 Rh4BG312800 Rh4BG312900
rosa_wichuraiana	Rw4G026550 Rw4G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AatII	GACGTC	1 cut(s)	593
AccB7I	CCANNNNNTGG	1 cut(s)	473
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	1 cut(s)	431
AcuI	CTGAAG	2 cut(s)	384, 582
AcyI	GRCGYC	1 cut(s)	590
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	1 cut(s)	473
AgsI	TTSAA	3 cut(s)	18, 505, 686
AhlI	ACTAGT	1 cut(s)	625
AjnI	CCWGG	2 cut(s)	315, 478
AluBI	AGCT	3 cut(s)	22, 182, 578
AluI	AGCT	3 cut(s)	22, 182, 578
Alw26I	GTCTC	2 cut(s)	71, 578
AlwI	GGATC	1 cut(s)	431
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	4 cut(s)	182, 185, 557, 707
AseI	ATTAAT	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	476
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	4 cut(s)	209, 259, 320, 363
AvaII	GGWCC	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	372
BbvCI	CCTCAGC	1 cut(s)	711
BbvI	GCAGC	4 cut(s)	169, 197, 544, 694
BccI	CCATC	2 cut(s)	221, 413
BceAI	ACGGC	2 cut(s)	11, 177
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	2 cut(s)	317, 480
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	71, 578
BcuI	ACTAGT	1 cut(s)	625
BfaI	CTAG	3 cut(s)	575, 626, 699
BfmI	CTRYAG	2 cut(s)	183, 654
BglII	AGATCT	1 cut(s)	440
BisI	GCNGC	5 cut(s)	55, 183, 186, 558, 708
BlsI	GCNGC	5 cut(s)	56, 184, 187, 559, 709
BmcAI	AGTACT	1 cut(s)	624
Bme1390I	CCNGG	3 cut(s)	317, 346, 480
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	476
BmrFI	CCNGG	3 cut(s)	317, 346, 480
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	465
Bpu10I	CCTNAGC	1 cut(s)	711
BpuMI	CCSGG	1 cut(s)	346
BsaHI	GRCGYC	1 cut(s)	590
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	4 cut(s)	72, 193, 374, 472
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
BseBI	CCWGG	2 cut(s)	317, 480
BseDI	CCNNGG	4 cut(s)	72, 193, 374, 472
BseGI	GGATG	2 cut(s)	232, 517
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMII	CTCAG	2 cut(s)	423, 702
BseRI	GAGGAG	3 cut(s)	89, 548, 647
BseXI	GCAGC	4 cut(s)	169, 197, 544, 694
BshFI	GGCC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmAI	GTCTC	2 cut(s)	71, 578
BsmBI	CGTCTC	1 cut(s)	578
BsnI	GGCC	1 cut(s)	192
Bso31I	GGTCTC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	423, 440
Bsp19I	CCATGG	1 cut(s)	472
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	2 cut(s)	424, 703
BspMAI	CTGCAG	2 cut(s)	187, 658
BspPI	GGATC	1 cut(s)	431
BspTNI	GGTCTC	1 cut(s)	71
BssECI	CCNNGG	4 cut(s)	72, 193, 374, 472
BssMI	GATC	2 cut(s)	423, 440
BssNI	GRCGYC	1 cut(s)	590
BssT1I	CCWWGG	2 cut(s)	374, 472
Bst2UI	CCWGG	2 cut(s)	317, 480
Bst4CI	ACNGT	1 cut(s)	682
Bst6I	CTCTTC	4 cut(s)	711, 723, 747, 752
BstACI	GRCGYC	1 cut(s)	590
BstC8I	GCNNGC	4 cut(s)	24, 190, 555, 618
BstDEI	CTNAG	2 cut(s)	432, 711
BstDSI	CCRYGG	2 cut(s)	193, 472
BstF5I	GGATG	2 cut(s)	232, 517
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	2 cut(s)	426, 443
BstMAI	GTCTC	2 cut(s)	71, 578
BstMBI	GATC	2 cut(s)	423, 440
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	2 cut(s)	317, 480
BstSCI	CCNGG	3 cut(s)	315, 344, 478
BstSFI	CTRYAG	2 cut(s)	183, 654
BstV1I	GCAGC	4 cut(s)	169, 197, 544, 694
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	440
BstXI	CCANNNNNNTGG	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	192
BtgI	CCRYGG	2 cut(s)	193, 472
BtsCI	GGATG	2 cut(s)	232, 517
Cac8I	GCNNGC	4 cut(s)	24, 190, 555, 618
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	476
CseI	GACGC	1 cut(s)	438
CsiI	ACCWGGT	1 cut(s)	315
Csp6I	GTAC	1 cut(s)	623
CviAII	CATG	3 cut(s)	170, 338, 473
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	2 cut(s)	432, 711
DpnI	GATC	2 cut(s)	425, 442
DpnII	GATC	2 cut(s)	423, 440
Eam1104I	CTCTTC	4 cut(s)	711, 723, 747, 752
EarI	CTCTTC	4 cut(s)	711, 723, 747, 752
Eco130I	CCWWGG	2 cut(s)	374, 472
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	476
Eco57I	CTGAAG	2 cut(s)	384, 582
EcoRII	CCWGG	2 cut(s)	315, 478
EcoT14I	CCWWGG	2 cut(s)	374, 472
ErhI	CCWWGG	2 cut(s)	374, 472
Esp3I	CGTCTC	1 cut(s)	578
FaeI	CATG	3 cut(s)	173, 341, 476
FaiI	YATR	6 cut(s)	143, 171, 233, 339, 356, 474
FatI	CATG	3 cut(s)	169, 337, 472
Fnu4HI	GCNGC	5 cut(s)	55, 183, 186, 558, 708
FokI	GGATG	2 cut(s)	239, 524
Fsp4HI	GCNGC	5 cut(s)	55, 183, 186, 558, 708
FspBI	CTAG	3 cut(s)	575, 626, 699
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	5 cut(s)	55, 183, 186, 558, 708
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	345
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	1 cut(s)	54
Hin1I	GRCGYC	1 cut(s)	590
Hin1II	CATG	3 cut(s)	173, 341, 476
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	2 cut(s)	14, 368
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	4 cut(s)	209, 259, 320, 363
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	4 cut(s)	334, 364, 433, 454
Hpy188III	TCNNGA	1 cut(s)	444
Hpy8I	GTNNAC	1 cut(s)	200
Hpy99I	CGWCG	1 cut(s)	592
HpyAV	CCTTC	2 cut(s)	244, 404
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4IV	ACGT	1 cut(s)	590
HpyCH4V	TGCA	3 cut(s)	132, 185, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	2 cut(s)	432, 711
HpySE526I	ACGT	1 cut(s)	590
Hsp92I	GRCGYC	1 cut(s)	590
Hsp92II	CATG	3 cut(s)	173, 341, 476
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	423, 440
LmnI	GCTCC	2 cut(s)	334, 446
Lsp1109I	GCAGC	4 cut(s)	169, 197, 544, 694
MabI	ACCWGGT	1 cut(s)	315
MaeI	CTAG	3 cut(s)	575, 626, 699
MaeII	ACGT	1 cut(s)	590
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	2 cut(s)	425, 442
MboI	GATC	2 cut(s)	423, 440
MflI	RGATCY	1 cut(s)	440
MluCI	AATT	3 cut(s)	398, 545, 638
MlyI	GAGTC	1 cut(s)	362
MseI	TTAA	3 cut(s)	210, 258, 763
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	3 cut(s)	317, 346, 480
MvaI	CCWGG	2 cut(s)	317, 480
MwoI	GCNNNNNNNGC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	346
NcoI	CCATGG	1 cut(s)	472
NdeII	GATC	2 cut(s)	423, 440
NlaIII	CATG	3 cut(s)	173, 341, 476
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	14
PflFI	GACNNNGTC	1 cut(s)	589
PflMI	CCANNNNNTGG	1 cut(s)	473
PkrI	GCNGC	5 cut(s)	56, 184, 187, 559, 709
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
PshBI	ATTAAT	1 cut(s)	258
PsiI	TTATAA	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	315, 478
PspGI	CCWGG	2 cut(s)	315, 478
PspPI	GGNCC	1 cut(s)	476
PstI	CTGCAG	2 cut(s)	187, 658
PsuI	RGATCY	1 cut(s)	440
PsyI	GACNNNGTC	1 cut(s)	589
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
SaqAI	TTAA	3 cut(s)	210, 258, 763
SatI	GCNGC	5 cut(s)	55, 183, 186, 558, 708
Sau3AI	GATC	2 cut(s)	423, 440
Sau96I	GGNCC	1 cut(s)	476
ScaI	AGTACT	1 cut(s)	624
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	3 cut(s)	317, 346, 480
SetI	ASST	9 cut(s)	24, 184, 249, 310, 321, 481, 510, 580, 593
SexAI	ACCWGGT	1 cut(s)	315
SfcI	CTRYAG	2 cut(s)	183, 654
SinI	GGWCC	1 cut(s)	476
SpeI	ACTAGT	1 cut(s)	625
Sse9I	AATT	3 cut(s)	398, 545, 638
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	3 cut(s)	575, 626, 699
StyD4I	CCNGG	3 cut(s)	315, 344, 478
StyI	CCWWGG	2 cut(s)	374, 472
TaaI	ACNGT	1 cut(s)	682
TaiI	ACGT	1 cut(s)	593
TaqI	TCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	398, 545, 638
TatI	WGTACW	1 cut(s)	622
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	3 cut(s)	210, 258, 763
Tru9I	TTAA	3 cut(s)	210, 258, 763
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	4 cut(s)	182, 185, 557, 707
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	2 cut(s)	276, 354
Tth111I	GACNNNGTC	1 cut(s)	589
Van91I	CCANNNNNTGG	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	476
VspI	ATTAAT	1 cut(s)	258
XspI	CTAG	3 cut(s)	575, 626, 699
ZraI	GACGTC	1 cut(s)	591
ZrmI	AGTACT	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.