Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039160.1

Orthogroup ID

OG0006982

Physical Location & Seq

Genomic Coordinates Forward (+)

30 .. 622

Gene Structure 593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039160.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 593 bp

atgcagacatgcaatctggtatcattgatttctaccctgtgttcttggactcttgtttgtagttactcaactattgcatgggcagcttcaatacacaagggggtcgtaccagatgtggactacagctacagagcctcaactactcctggaactgtgcttaacttctttggtgggttgggtgaggtagcatttgcctatgctggtcacaatgtggtcctggagatccaagcaaccattccttcgacgccggaaaagccttccaaaggtcctatgtggaaaggagtggttgtggcttacatagttgtggctatatgctatttccctgttgcaattgttgggttttatgtcttcggaaatagggttgatgataacatactcatctcgctggagaaaccagcttggctaattgcaactgctaacatgtttgtcgtagttcatgtgattggaagctatcagatatatgcaatggcagtgtttgacatgattgaaacctttttggttaaaaaaatgaacttctcacccagtttcgttctccgcttttttactcgaactacatatgttggtacgtccacttacgctacacctctccgttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

197

Amino Acids

21.69

Weight (kDa)

8.32

Isoelectric Point (pI)

29.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24400 AT1G67640
fragaria_vesca	FvH4_4g24381 FvH4_4g24381 FvH4_4g24390
malus_domestica	MD13G1111700.v1.1 MD16G1111300.v1.1
prunus_persica	Prupe.1G233800_v2.0.a1
pyrus_communis	pycom16g09430
rosa_chinensis	RchiOBHm_Chr4g0431231 RchiOBHm_Chr4g0431241
rosa_laevigata	RLG00000006916 RLG00000006917
rosa_multiflora	Rmu_sc0005258.1_g000008 Rmu_sc0039160.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372770 Rroxscaffold_5G00372780
rosa_rugosa	Rorug04G0249400 Rorug04G0249500 Rorug04G0249600
rosa_samantha	Rh4AG305500 Rh4BG312800 Rh4BG312900
rosa_wichuraiana	Rw4G026550 Rw4G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	535
AclWI	GGATC	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	245
AdeI	CACNNNGTG	1 cut(s)	211
AfaI	GTAC	2 cut(s)	108, 565
AfiI	CCNNNNNNNGG	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	2 cut(s)	90, 488
AjnI	CCWGG	2 cut(s)	145, 216
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
AluBI	AGCT	4 cut(s)	86, 126, 398, 450
AluI	AGCT	4 cut(s)	86, 126, 398, 450
AlwI	GGATC	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	214, 266
AsuHPI	GGTGA	2 cut(s)	191, 510
AvaII	GGWCC	2 cut(s)	214, 266
BbsI	GAAGAC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	95
BciT130I	CCWGG	2 cut(s)	147, 218
BfmI	CTRYAG	2 cut(s)	121, 127
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	147, 218
Bme18I	GGWCC	2 cut(s)	214, 266
BmgT120I	GGNCC	2 cut(s)	214, 266
BmrFI	CCNGG	2 cut(s)	147, 218
BmrI	ACTGGG	1 cut(s)	516
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	340
BpmI	CTGGAG	2 cut(s)	239, 407
BsaHI	GRCGYC	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	522
Bse3DI	GCAATG	1 cut(s)	471
BseBI	CCWGG	2 cut(s)	147, 218
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	471
BseNI	ACTGG	1 cut(s)	522
BseXI	GCAGC	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	222
BspACI	CCGC	1 cut(s)	535
BspPI	GGATC	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	522
BssMI	GATC	1 cut(s)	222
BssNI	GRCGYC	1 cut(s)	245
Bst2UI	CCWGG	2 cut(s)	147, 218
Bst4CI	ACNGT	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	245
BstENI	CCTNNNNNAGG	1 cut(s)	261
BstKTI	GATC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 253
BstNI	CCWGG	2 cut(s)	147, 218
BstNSI	RCATGY	2 cut(s)	12, 424
BstSCI	CCNGG	2 cut(s)	145, 216
BstSFI	CTRYAG	2 cut(s)	121, 127
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	477
Cfr13I	GGNCC	2 cut(s)	214, 266
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	107, 564
CviAII	CATG	5 cut(s)	9, 78, 421, 437, 481
CviJI	RGCY	9 cut(s)	86, 126, 134, 256, 293, 308, 398, 403, 450
CviKI_1	RGCY	9 cut(s)	86, 126, 134, 256, 293, 308, 398, 403, 450
CviQI	GTAC	2 cut(s)	107, 564
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
DraIII	CACNNNGTG	1 cut(s)	211
Eco47I	GGWCC	2 cut(s)	214, 266
EcoNI	CCTNNNNNAGG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	145, 216
FaeI	CATG	5 cut(s)	12, 81, 424, 440, 484
FatI	CATG	5 cut(s)	8, 77, 420, 436, 480
FauNDI	CATATG	1 cut(s)	556
Fnu4HI	GCNGC	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	84
GsuI	CTGGAG	2 cut(s)	239, 407
HapII	CCGG	1 cut(s)	248
HgaI	GACGC	1 cut(s)	253
Hin1I	GRCGYC	1 cut(s)	245
Hin1II	CATG	5 cut(s)	12, 81, 424, 440, 484
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	2 cut(s)	191, 510
Hpy166II	GTNNAC	2 cut(s)	118, 570
Hpy188I	TCNGA	2 cut(s)	353, 456
Hpy8I	GTNNAC	2 cut(s)	118, 570
Hpy99I	CGWCG	1 cut(s)	247
HpyAV	CCTTC	2 cut(s)	249, 267
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	6 cut(s)	4, 12, 77, 329, 410, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 253
HpySE526I	ACGT	1 cut(s)	566
Hsp92I	GRCGYC	1 cut(s)	245
Hsp92II	CATG	5 cut(s)	12, 81, 424, 440, 484
Kzo9I	GATC	1 cut(s)	222
Lsp1109I	GCAGC	1 cut(s)	95
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	2 cut(s)	62, 203
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	1 cut(s)	340
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	222
MluCI	AATT	2 cut(s)	330, 405
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	2 cut(s)	145, 175
MseI	TTAA	2 cut(s)	159, 501
MslI	CAYNNNNRTG	1 cut(s)	302
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	147, 218
MunI	CAATTG	1 cut(s)	330
MvaI	CCWGG	2 cut(s)	147, 218
MwoI	GCNNNNNNNGC	2 cut(s)	83, 253
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	5 cut(s)	12, 81, 424, 440, 484
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	2 cut(s)	12, 424
PciI	ACATGT	1 cut(s)	420
PfoI	TCCNGGA	2 cut(s)	145, 216
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PpuMI	RGGWCCY	1 cut(s)	266
PscI	ACATGT	1 cut(s)	420
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	145, 216
PspGI	CCWGG	2 cut(s)	145, 216
PspPI	GGNCC	2 cut(s)	214, 266
PspPPI	RGGWCCY	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	2 cut(s)	108, 565
RsaNI	GTAC	2 cut(s)	107, 564
RseI	CAYNNNNRTG	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	159, 501
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	2 cut(s)	214, 266
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	147, 218
SetI	ASST	9 cut(s)	88, 128, 186, 268, 400, 452, 494, 569, 586
SfcI	CTRYAG	2 cut(s)	121, 127
SinI	GGWCC	2 cut(s)	214, 266
SmiMI	CAYNNNNRTG	1 cut(s)	302
Sse9I	AATT	2 cut(s)	330, 405
SsiI	CCGC	1 cut(s)	535
StyD4I	CCNGG	2 cut(s)	145, 216
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	2 cut(s)	242, 547
TasI	AATT	2 cut(s)	330, 405
Tru1I	TTAA	2 cut(s)	159, 501
Tru9I	TTAA	2 cut(s)	159, 501
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	425, 524
TspGWI	ACGGA	1 cut(s)	578
TspRI	CASTG	1 cut(s)	477
VpaK11BI	GGWCC	2 cut(s)	214, 266
XagI	CCTNNNNNAGG	1 cut(s)	261
XceI	RCATGY	2 cut(s)	12, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.