MD16G1111300.v1.1

Lysine histidine transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
7815415 .. 7818468
3054 bp
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UTR
Exon/CDS
Intron
MD16G1111300.v1.1.491

Sequence Viewer

Length: 1317 bp
ATGAAACAATCGTCGAAGGAAGCTGAAGAGGCGAGGCAGAAGCAGATTGACGATTGGCTTCCGGTCACTTCTGCTAGGAATGCCAAATGGTGGTACTCAGCTTTCCACAATGTCACTGCCATGGTTGGGGCTGGTGTCCTTAGCCTTCCCTATGCCATGGCCGAGCTTGGATGGGGTCCTGGCATTGCTGTCGTGCTTCTGTCATGGATCATCACCCTATATACACTATGGCAAATGGTTGAGATGCATGAAATGGTGCCGGGGAAGCGGTTCGATCGGTACCACGAGCTGGGACAGCATGCCTTTGGAGAGAAGCTGGGCCTCTGGGTCGTTGTGCCCCAACAGCTAATTGTGGAAGTTGGTGTCAATATTGTCTATATGGTCACAGGAGGAAAGTCATTGAAGAAGGTCCATGATGTGATTTGCCCTAGCTGCAAAGACATCAAACTCACCTTATGGATTTTGATTTTTGCTTCTGCCCACTTTGTTCTCTCCCATCTCCCCAACTTAAACTCCGTCTCTGGTATCTCGCTTGCTGCCGCAGTCATGTCCTTGAGTTACTCAACGATTGCGTGGGGAGCTGCTATTCACAAGGGGAAGGTACCGAACGTGGACTACAGCTACAAAGCTAAATCCAATGTCGGAGCTGTCTTCAACTTCTTTAGTGGGTTGGGAGACATAGCATTTGCCTACGCTGGCCACAATGTCGTTTTGGAGATCCAAGCAACGATTCCTTCCACACCCGAGAAGCCTTCCAAGGGACCAATGTGGAAAGGAGTTGTTGTGGCATACATTGTGGTGGCTTTGTGCTACTTCCCTGTTTGTTTTGTTGGCTACTATATTTACGGAAACTCTGTTGAAGACAACATCCTCATCTCACTCGAAAAACCTGTCTGGCTAATTGCAGCAGCTAACATATTTGTTGTGATCCATGTCATTGGAAGCTACCAAGTTTTCGCGATGGGAGTTTTTGACATGGTTGAAACTTTTCTGGTCAAGAAAATGAACTTCCCGCCTTCTTTCACCCTTCGCTTTATTACCCGCACGATATATGTTGCAATTACCATGGTCATTGGTATGGCCATCCCTTTCTTTGGTGGCCTTCTCGGATTCTTTGGAGGATTTGCTTTCGCCCCAACCACATACTTCCTTCCCTGCATCATGTGGCTCGCCATCTACAAACCGAGACGTTTCAGTCTATCTTGGTGCATAAACTGGACCTGCATTATACTGGGAGCTACCTTGATGATTCTAGCACCCATCGGTGCCCTACGGAGTATCATCTTGCAATCGAAAACCTACACATTCTTCTCTTAA

Protein Analysis

439

Amino Acids

48.62

Weight (kDa)

9.06

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 27 - 423 3.1e-106 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 32 - 142 1e-07 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1194
Acc36I ACCTGC 1 cut(s) 1229
Acc65I GGTACC 2 cut(s) 279, 601
AccB1I GGYRCC 4 cut(s) 256, 279, 601, 1265
AccB7I CCANNNNNTGG 2 cut(s) 90, 289
AccII CGCG 1 cut(s) 959
AciI CCGC 4 cut(s) 268, 540, 1013, 1042
AclWI GGATC 3 cut(s) 215, 712, 922
AcoI YGGCCR 3 cut(s) 159, 697, 1080
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 3 cut(s) 95, 281, 603
AfiI CCNNNNNNNGG 5 cut(s) 90, 126, 289, 758, 1094
AgsI TTSAA 4 cut(s) 403, 655, 860, 983
AjnI CCWGG 1 cut(s) 178
AjuI GAANNNNNNNTTGG 2 cut(s) 714, 746
Alw26I GTCTC 3 cut(s) 523, 669, 1180
AlwI GGATC 3 cut(s) 215, 712, 922
Ama87I CYCGRG 1 cut(s) 743
AoxI GGCC 5 cut(s) 159, 319, 697, 1080, 1099
ApeKI GCWGC 5 cut(s) 432, 536, 581, 905, 908
ArsI GACNNNNNNTTYG 4 cut(s) 668, 700, 876, 908
Asp700I GAANNNNTTC 2 cut(s) 269, 987
Asp718I GGTACC 2 cut(s) 279, 601
AspS9I GGNCC 5 cut(s) 176, 319, 409, 761, 1218
AsuC2I CCSGG 1 cut(s) 261
AsuHPI GGTGA 3 cut(s) 205, 442, 1015
AvaI CYCGRG 1 cut(s) 743
AvaII GGWCC 4 cut(s) 176, 409, 761, 1218
BaeGI GKGCMC 2 cut(s) 339, 1270
BalI TGGCCA 2 cut(s) 699, 1082
BanI GGYRCC 4 cut(s) 256, 279, 601, 1265
BauI CACGAG 1 cut(s) 284
BbsI GAAGAC 2 cut(s) 643, 867
BbvI GCAGC 5 cut(s) 419, 523, 568, 917, 920
BccI CCATC 6 cut(s) 165, 504, 955, 1091, 1181, 1268
BcgI CGANNNNNNTGC 2 cut(s) 172, 206
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 1 cut(s) 261
BcoDI GTCTC 3 cut(s) 523, 669, 1180
BfaI CTAG 3 cut(s) 75, 429, 1253
BfmI CTRYAG 1 cut(s) 616
BfuAI ACCTGC 1 cut(s) 1229
BisI GCNGC 6 cut(s) 433, 537, 540, 582, 906, 909
BlsI GCNGC 6 cut(s) 434, 538, 541, 583, 907, 910
Bme1390I CCNGG 2 cut(s) 180, 261
Bme18I GGWCC 4 cut(s) 176, 409, 761, 1218
BmeT110I CYCGRG 1 cut(s) 743
BmgT120I GGNCC 5 cut(s) 176, 319, 409, 761, 1218
BmiI GGNNCC 6 cut(s) 177, 258, 281, 603, 762, 1267
BmrFI CCNGG 2 cut(s) 180, 261
BmrI ACTGGG 1 cut(s) 1241
BmsI GCATC 2 cut(s) 234, 1167
BmuI ACTGGG 1 cut(s) 1241
BpiI GAAGAC 2 cut(s) 643, 867
Bpu10I CCTNAGC 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 574
BpuMI CCSGG 1 cut(s) 261
BsaJI CCNNGG 5 cut(s) 120, 156, 260, 756, 1065
BsaWI WCCGGW 1 cut(s) 61
BsaXI ACNNNNNCTCC 4 cut(s) 497, 527, 768, 798
Bsc4I CCNNNNNNNGG 5 cut(s) 90, 126, 289, 758, 1094
Bse1I ACTGG 2 cut(s) 1220, 1236
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 5 cut(s) 120, 156, 260, 756, 1065
BseGI GGATG 3 cut(s) 176, 867, 1083
BseLI CCNNNNNNNGG 5 cut(s) 90, 126, 289, 758, 1094
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 1220, 1236
BseSI GKGCMC 2 cut(s) 339, 1270
BseXI GCAGC 5 cut(s) 419, 523, 568, 917, 920
BseYI CCCAGC 2 cut(s) 289, 316
Bsh1236I CGCG 1 cut(s) 959
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 5 cut(s) 161, 321, 699, 1082, 1101
BshNI GGYRCC 4 cut(s) 256, 279, 601, 1265
BsiEI CGRYCG 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 743
BsiSI CCGG 2 cut(s) 62, 260
BslFI GGGAC 2 cut(s) 306, 774
BslI CCNNNNNNNGG 5 cut(s) 90, 126, 289, 758, 1094
BsmAI GTCTC 3 cut(s) 523, 669, 1180
BsmBI CGTCTC 2 cut(s) 523, 1180
BsmFI GGGAC 2 cut(s) 306, 774
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 5 cut(s) 161, 321, 699, 1082, 1101
BsoBI CYCGRG 1 cut(s) 743
Bsp1286I GDGCHC 2 cut(s) 339, 1270
Bsp143I GATC 4 cut(s) 207, 274, 717, 927
Bsp19I CCATGG 3 cut(s) 120, 156, 1065
Bsp68I TCGCGA 1 cut(s) 959
BspACI CCGC 4 cut(s) 268, 540, 1013, 1042
BspANI GGCC 5 cut(s) 161, 321, 699, 1082, 1101
BspCNI CTCAG 1 cut(s) 110
BspFNI CGCG 1 cut(s) 959
BspLI GGNNCC 6 cut(s) 177, 258, 281, 603, 762, 1267
BspMI ACCTGC 1 cut(s) 1229
BspPI GGATC 3 cut(s) 215, 712, 922
BspT107I GGYRCC 4 cut(s) 256, 279, 601, 1265
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 2 cut(s) 1220, 1236
BssECI CCNNGG 5 cut(s) 120, 156, 260, 756, 1065
BssMI GATC 4 cut(s) 207, 274, 717, 927
BssSI CACGAG 1 cut(s) 284
BssT1I CCWWGG 4 cut(s) 120, 156, 756, 1065
Bst2BI CACGAG 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 21
BstC8I GCNNGC 4 cut(s) 300, 534, 697, 1170
BstDEI CTNAG 2 cut(s) 97, 140
BstDSI CCRYGG 3 cut(s) 120, 156, 1065
BstF5I GGATG 3 cut(s) 176, 867, 1083
BstFNI CGCG 1 cut(s) 959
BstKTI GATC 4 cut(s) 210, 277, 720, 930
BstMAI GTCTC 3 cut(s) 523, 669, 1180
BstMBI GATC 4 cut(s) 207, 274, 717, 927
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 7 cut(s) 29, 80, 265, 295, 343, 432, 578
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 2 cut(s) 178, 259
BstSFI CTRYAG 1 cut(s) 616
BstSLI GKGCMC 2 cut(s) 339, 1270
BstUI CGCG 1 cut(s) 959
BstV1I GCAGC 5 cut(s) 419, 523, 568, 917, 920
BstV2I GAAGAC 2 cut(s) 643, 867
BstX2I RGATCY 1 cut(s) 717
BstXI CCANNNNNNTGG 1 cut(s) 938
BstYI RGATCY 1 cut(s) 717
BsuRI GGCC 5 cut(s) 161, 321, 699, 1082, 1101
BtgI CCRYGG 3 cut(s) 120, 156, 1065
BtgZI GCGATG 1 cut(s) 974
BtsCI GGATG 3 cut(s) 176, 867, 1083
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
BtuMI TCGCGA 1 cut(s) 959
BveI ACCTGC 1 cut(s) 1229
Cac8I GCNNGC 4 cut(s) 300, 534, 697, 1170
Cfr13I GGNCC 5 cut(s) 176, 319, 409, 761, 1218
Csp6I GTAC 3 cut(s) 94, 280, 602
CviQI GTAC 3 cut(s) 94, 280, 602
DdeI CTNAG 2 cut(s) 97, 140
DpnI GATC 4 cut(s) 209, 276, 719, 929
DpnII GATC 4 cut(s) 207, 274, 717, 927
DrdI GACNNNNNNGTC 1 cut(s) 1194
DseDI GACNNNNNNGTC 1 cut(s) 1194
EaeI YGGCCR 3 cut(s) 159, 697, 1080
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco130I CCWWGG 4 cut(s) 120, 156, 756, 1065
Eco47I GGWCC 4 cut(s) 176, 409, 761, 1218
Eco57I CTGAAG 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 743
EcoO109I RGGNCCY 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 4 cut(s) 120, 156, 756, 1065
EcoT22I ATGCAT 1 cut(s) 249
ErhI CCWWGG 4 cut(s) 120, 156, 756, 1065
Esp3I CGTCTC 2 cut(s) 523, 1180
FaqI GGGAC 2 cut(s) 306, 774
FauI CCCGC 2 cut(s) 1020, 1049
Fnu4HI GCNGC 6 cut(s) 433, 537, 540, 582, 906, 909
FokI GGATG 3 cut(s) 183, 854, 1070
Fsp4HI GCNGC 6 cut(s) 433, 537, 540, 582, 906, 909
FspBI CTAG 3 cut(s) 75, 429, 1253
GluI GCNGC 6 cut(s) 433, 537, 540, 582, 906, 909
GsaI CCCAGC 2 cut(s) 293, 320
HaeIII GGCC 5 cut(s) 161, 321, 699, 1082, 1101
HapII CCGG 2 cut(s) 62, 260
HinfI GANTC 3 cut(s) 730, 1110, 1249
HpaII CCGG 2 cut(s) 62, 260
HphI GGTGA 3 cut(s) 205, 442, 1015
Hpy166II GTNNAC 1 cut(s) 613
Hpy188I TCNGA 2 cut(s) 644, 1109
Hpy188III TCNNGA 2 cut(s) 958, 997
Hpy8I GTNNAC 1 cut(s) 613
Hpy99I CGWCG 1 cut(s) 16
HpyCH4IV ACGT 2 cut(s) 609, 1189
HpyCH4V TGCA 8 cut(s) 247, 435, 905, 1058, 1158, 1209, 1224, 1288
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 80, 265, 295, 343, 432, 578
HpyF3I CTNAG 2 cut(s) 97, 140
HpySE526I ACGT 2 cut(s) 609, 1189
KpnI GGTACC 2 cut(s) 283, 605
Kzo9I GATC 4 cut(s) 207, 274, 717, 927
LmnI GCTCC 3 cut(s) 578, 644, 1235
Lsp1109I GCAGC 5 cut(s) 419, 523, 568, 917, 920
LweI GCATC 2 cut(s) 234, 1167
MaeI CTAG 3 cut(s) 75, 429, 1253
MaeII ACGT 2 cut(s) 609, 1189
MaeIII GTNAC 4 cut(s) 64, 112, 382, 557
MalI GATC 4 cut(s) 209, 276, 719, 929
MboI GATC 4 cut(s) 207, 274, 717, 927
MboII GAAGA 5 cut(s) 38, 415, 643, 872, 1300
MflI RGATCY 1 cut(s) 717
MhlI GDGCHC 2 cut(s) 339, 1270
MlsI TGGCCA 2 cut(s) 699, 1082
MluCI AATT 3 cut(s) 348, 900, 1059
MluNI TGGCCA 2 cut(s) 699, 1082
MmeI TCCRAC 1 cut(s) 622
MnlI CCTC 6 cut(s) 22, 27, 332, 383, 881, 1112
Mox20I TGGCCA 2 cut(s) 699, 1082
Mph1103I ATGCAT 1 cut(s) 249
MroXI GAANNNNTTC 2 cut(s) 269, 987
MscI TGGCCA 2 cut(s) 699, 1082
MseI TTAA 2 cut(s) 509, 1315
MslI CAYNNNNRTG 3 cut(s) 119, 797, 1076
Msp20I TGGCCA 2 cut(s) 699, 1082
MspI CCGG 2 cut(s) 62, 260
MspR9I CCNGG 2 cut(s) 180, 261
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 959
MwoI GCNNNNNNNGC 7 cut(s) 29, 80, 265, 295, 343, 432, 578
NciI CCSGG 1 cut(s) 261
NcoI CCATGG 3 cut(s) 120, 156, 1065
NdeII GATC 4 cut(s) 207, 274, 717, 927
NlaIV GGNNCC 6 cut(s) 177, 258, 281, 603, 762, 1267
NmeAIII GCCGAG 1 cut(s) 187
NmuCI GTSAC 3 cut(s) 64, 112, 382
NruI TCGCGA 1 cut(s) 959
NsiI ATGCAT 1 cut(s) 249
NspI RCATGY 1 cut(s) 302
PaeI GCATGC 1 cut(s) 302
PctI GAATGC 1 cut(s) 85
PdmI GAANNNNTTC 2 cut(s) 269, 987
PfeI GAWTC 3 cut(s) 730, 1110, 1249
PflMI CCANNNNNTGG 2 cut(s) 90, 289
PkrI GCNGC 6 cut(s) 434, 538, 541, 583, 907, 910
Ple19I CGATCG 1 cut(s) 277
PpuMI RGGWCCY 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 178
PspFI CCCAGC 2 cut(s) 289, 316
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 6 cut(s) 177, 258, 281, 603, 762, 1267
PspPI GGNCC 5 cut(s) 176, 319, 409, 761, 1218
PspPPI RGGWCCY 1 cut(s) 176
PsrI GAACNNNNNNTAC 2 cut(s) 599, 631
PsuI RGATCY 1 cut(s) 717
PvuI CGATCG 1 cut(s) 277
RruI TCGCGA 1 cut(s) 959
RsaI GTAC 3 cut(s) 95, 281, 603
RsaNI GTAC 3 cut(s) 94, 280, 602
RseI CAYNNNNRTG 3 cut(s) 119, 797, 1076
SaqAI TTAA 2 cut(s) 509, 1315
SatI GCNGC 6 cut(s) 433, 537, 540, 582, 906, 909
Sau3AI GATC 4 cut(s) 207, 274, 717, 927
Sau96I GGNCC 5 cut(s) 176, 319, 409, 761, 1218
ScrFI CCNGG 2 cut(s) 180, 261
SduI GDGCHC 2 cut(s) 339, 1270
SfaNI GCATC 2 cut(s) 234, 1167
SfcI CTRYAG 1 cut(s) 616
SinI GGWCC 4 cut(s) 176, 409, 761, 1218
SmiMI CAYNNNNRTG 3 cut(s) 119, 797, 1076
SmlI CTYRAG 1 cut(s) 553
SmoI CTYRAG 1 cut(s) 553
SphI GCATGC 1 cut(s) 302
Sse9I AATT 3 cut(s) 348, 900, 1059
SsiI CCGC 4 cut(s) 268, 540, 1013, 1042
SspI AATATT 1 cut(s) 370
SspMI CTAG 3 cut(s) 75, 429, 1253
StyD4I CCNGG 2 cut(s) 178, 259
StyI CCWWGG 4 cut(s) 120, 156, 756, 1065
TaiI ACGT 2 cut(s) 612, 1192
TaqI TCGA 4 cut(s) 14, 273, 882, 1292
TasI AATT 3 cut(s) 348, 900, 1059
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 3 cut(s) 730, 1110, 1249
Tru1I TTAA 2 cut(s) 509, 1315
Tru9I TTAA 2 cut(s) 509, 1315
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 3 cut(s) 64, 112, 382
TseI GCWGC 5 cut(s) 432, 536, 581, 905, 908
Tsp45I GTSAC 3 cut(s) 64, 112, 382
TspDTI ATGAA 3 cut(s) 17, 264, 1019
TspGWI ACGGA 3 cut(s) 505, 861, 1288
TspRI CASTG 1 cut(s) 121
Van91I CCANNNNNTGG 2 cut(s) 90, 289
VpaK11BI GGWCC 4 cut(s) 176, 409, 761, 1218
XceI RCATGY 1 cut(s) 302
XmnI GAANNNNTTC 2 cut(s) 269, 987
XspI CTAG 3 cut(s) 75, 429, 1253
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.