Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006982

Physical Location & Seq

Genomic Coordinates Reverse (-)

61746865 .. 61749249

Gene Structure 2385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG305500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCCGAGGCTACTCTGTCAGATGCTGAGCTTGCGAGACAGAAGCAGATCAACGATTGGCTTCCCATCACTTCTGCTAGGAATGCCAAATGGTGGTACTCCGCTTTCCACAATGTCACTGCTATGGTTGGGGCTGGTGTCCTTAGTCTTCCTTTTGCCCTTGCAGAGCTTGGCTGGGGTCCTGGTGTGGTTATCCTTATTTTGTCATGGGTCATCACCCTATACACACTATGGCAAATGGTTGAGATGCATGAAATGGTGCCTGGCAAGCGGTTCGATAGGTATCACGAGCTGGGTCAACATGCCTTTGGGCCGAAGCTAGGGCTCTGGGTTGTGGTGCCCCAACAGGTAGTTGTTGAGGTTGGTGTTTGCATAGTCTATATGGTGACAGGAGGAAAATCATTGAAGAAAGTCCATGATGTGCTTTGTCCTAGCTGCAAAGATATCAGGACCACGTTCTGGATTATGATTTTTGCTTCTTGTCACTTTGTGCTTTCCCATCTCCCCAACTTCAACTCCATGTCTGGTATCTCACTCGCCGCAGCAATCATGTCCTTGAGTTACTCAACTATTGCATGGGCAGCTTCATTACACAAGGGGGTCGTACCAGATGTGGACTACAGCTACAGAGCCTCAACTACTCCTGGAACTGTGCTTAACTTCTTTGGTGGGTTGGGTGAGGTAGCATTTGCCTATGCTGGTCACAATGTGGTCCTGGAGATCCAAGCAACCATTCCTTCAACGCCGGAAAAGCCTTCCAAAGGTCCCATGTGGAAAGGAGTGCTTGTGGCATACATAGTTGTGGCTATATGCTACTTCCCTGTTGCTATTGTTGGGTTTTATGTCTTCGGAAATAGGGTTGATGACAACATACTCATCTCGCTGGAGAAACCAGCTTGGCTAATTGCAACTGCTAACATGTTTGTCGTAGTTCATGTGATTGGAAGCTATCAGATATATGCAATGGCGGTGTTTGACATGATTGAAACCTTTTTGGTTAAAAAAATGAACTTCTCACCCAGTTTCGTTCTCCGCTTTTTTACTCGAACTACATATGTTGCTCCCATTGGTGCACTAAGGAACATCATCATCAAAGCGAAAACCTACGAGTTCTTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

373

Amino Acids

41.37

Weight (kDa)

8.67

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	28 - 355	2.2e-87	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	33 - 144	7.9e-09	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24400 AT1G67640
fragaria_vesca	FvH4_4g24381 FvH4_4g24381 FvH4_4g24390
malus_domestica	MD13G1111700.v1.1 MD16G1111300.v1.1
prunus_persica	Prupe.1G233800_v2.0.a1
pyrus_communis	pycom16g09430
rosa_chinensis	RchiOBHm_Chr4g0431231 RchiOBHm_Chr4g0431241
rosa_laevigata	RLG00000006916 RLG00000006917
rosa_multiflora	Rmu_sc0005258.1_g000008 Rmu_sc0039160.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372770 Rroxscaffold_5G00372780
rosa_rugosa	Rorug04G0249400 Rorug04G0249500 Rorug04G0249600
rosa_samantha	Rh4AG305500 Rh4BG312800 Rh4BG312900
rosa_wichuraiana	Rw4G026550 Rw4G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	259, 337
AccB7I	CCANNNNNTGG	2 cut(s)	93, 459
AciI	CCGC	5 cut(s)	102, 271, 540, 968, 1033
AclWI	GGATC	1 cut(s)	715
AcoI	YGGCCR	1 cut(s)	3
AdeI	CACNNNGTG	2 cut(s)	490, 709
AfaI	GTAC	2 cut(s)	98, 606
AfiI	CCNNNNNNNGG	4 cut(s)	93, 320, 459, 761
AflIII	ACRYGT	1 cut(s)	918
AgsI	TTSAA	4 cut(s)	406, 514, 741, 986
AjnI	CCWGG	4 cut(s)	181, 262, 643, 714
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
AluBI	AGCT	9 cut(s)	31, 169, 292, 319, 435, 584, 624, 896, 948
AluI	AGCT	9 cut(s)	31, 169, 292, 319, 435, 584, 624, 896, 948
Alw21I	GWGCWC	1 cut(s)	1075
Alw26I	GTCTC	1 cut(s)	31
Alw44I	GTGCAC	1 cut(s)	1071
AlwI	GGATC	1 cut(s)	715
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	2 cut(s)	3, 311
ApaLI	GTGCAC	1 cut(s)	1071
ApeKI	GCWGC	3 cut(s)	435, 542, 581
AspS9I	GGNCC	5 cut(s)	179, 311, 450, 712, 764
AsuHPI	GGTGA	4 cut(s)	208, 397, 689, 1008
AvaII	GGWCC	4 cut(s)	179, 450, 712, 764
BaeGI	GKGCMC	2 cut(s)	342, 1075
BanI	GGYRCC	2 cut(s)	259, 337
BanII	GRGCYC	1 cut(s)	327
BauI	CACGAG	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	140, 838
Bbv12I	GWGCWC	1 cut(s)	1075
BbvI	GCAGC	3 cut(s)	422, 554, 593
BccI	CCATC	2 cut(s)	74, 507
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	4 cut(s)	183, 264, 645, 716
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	3 cut(s)	78, 320, 432
BfmI	CTRYAG	2 cut(s)	619, 625
BisI	GCNGC	4 cut(s)	436, 540, 543, 582
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	4 cut(s)	437, 541, 544, 583
Bme1390I	CCNGG	4 cut(s)	183, 264, 645, 716
Bme18I	GGWCC	4 cut(s)	179, 450, 712, 764
BmgT120I	GGNCC	5 cut(s)	179, 311, 450, 712, 764
BmiI	GGNNCC	4 cut(s)	180, 261, 339, 766
BmrFI	CCNGG	4 cut(s)	183, 264, 645, 716
BmrI	ACTGGG	1 cut(s)	1014
BmsI	GCATC	2 cut(s)	13, 237
BmuI	ACTGGG	1 cut(s)	1014
BpiI	GAAGAC	2 cut(s)	140, 838
BplI	GAGNNNNNCTC	1 cut(s)	1100
BpmI	CTGGAG	2 cut(s)	737, 905
Bpu1102I	GCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	577
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	6
BsaXI	ACNNNNNCTCC	4 cut(s)	500, 530, 771, 801
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 320, 459, 761
Bse1I	ACTGG	1 cut(s)	1020
Bse3DI	GCAATG	1 cut(s)	969
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	4 cut(s)	183, 264, 645, 716
BseDI	CCNNGG	1 cut(s)	6
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	4 cut(s)	93, 320, 459, 761
BseMI	GCAATG	1 cut(s)	969
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	1020
BseSI	GKGCMC	2 cut(s)	342, 1075
BseXI	GCAGC	3 cut(s)	422, 554, 593
BseYI	CCCAGC	2 cut(s)	174, 292
BshFI	GGCC	2 cut(s)	5, 313
BshNI	GGYRCC	2 cut(s)	259, 337
BsiHKAI	GWGCWC	1 cut(s)	1075
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	4 cut(s)	93, 320, 459, 761
BsmAI	GTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	750
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	5, 313
Bsp1286I	GDGCHC	3 cut(s)	327, 342, 1075
Bsp143I	GATC	2 cut(s)	48, 720
Bsp1720I	GCTNAGC	1 cut(s)	27
BspACI	CCGC	5 cut(s)	102, 271, 540, 968, 1033
BspANI	GGCC	2 cut(s)	5, 313
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	4 cut(s)	180, 261, 339, 766
BspPI	GGATC	1 cut(s)	715
BspT107I	GGYRCC	2 cut(s)	259, 337
BsrDI	GCAATG	1 cut(s)	969
BsrI	ACTGG	1 cut(s)	1020
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	2 cut(s)	48, 720
BssSI	CACGAG	1 cut(s)	287
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	4 cut(s)	183, 264, 645, 716
Bst4CI	ACNGT	1 cut(s)	652
BstC8I	GCNNGC	2 cut(s)	33, 269
BstDEI	CTNAG	3 cut(s)	27, 143, 1076
BstENI	CCTNNNNNAGG	1 cut(s)	759
BstKTI	GATC	2 cut(s)	51, 723
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	2 cut(s)	48, 720
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 83, 268, 581, 751
BstNI	CCWGG	4 cut(s)	183, 264, 645, 716
BstNSI	RCATGY	2 cut(s)	305, 922
BstSCI	CCNGG	4 cut(s)	181, 262, 643, 714
BstSFI	CTRYAG	2 cut(s)	619, 625
BstSLI	GKGCMC	2 cut(s)	342, 1075
BstV1I	GCAGC	3 cut(s)	422, 554, 593
BstV2I	GAAGAC	2 cut(s)	140, 838
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
BsuRI	GGCC	2 cut(s)	5, 313
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	33, 269
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr13I	GGNCC	5 cut(s)	179, 311, 450, 712, 764
Csp6I	GTAC	2 cut(s)	97, 605
CviQI	GTAC	2 cut(s)	97, 605
DdeI	CTNAG	3 cut(s)	27, 143, 1076
DpnI	GATC	2 cut(s)	50, 722
DpnII	GATC	2 cut(s)	48, 720
DraIII	CACNNNGTG	2 cut(s)	490, 709
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	4 cut(s)	179, 450, 712, 764
EcoNI	CCTNNNNNAGG	1 cut(s)	759
EcoO109I	RGGNCCY	2 cut(s)	179, 764
EcoRII	CCWGG	4 cut(s)	181, 262, 643, 714
EcoRV	GATATC	1 cut(s)	445
EcoT22I	ATGCAT	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	327
FalI	AAGNNNNNCTT	2 cut(s)	768, 800
FaqI	GGGAC	1 cut(s)	750
FauNDI	CATATG	1 cut(s)	1054
Fnu4HI	GCNGC	4 cut(s)	436, 540, 543, 582
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	4 cut(s)	436, 540, 543, 582
FspBI	CTAG	3 cut(s)	78, 320, 432
GluI	GCNGC	4 cut(s)	436, 540, 543, 582
GsaI	CCCAGC	2 cut(s)	178, 296
GsuI	CTGGAG	2 cut(s)	737, 905
HaeIII	GGCC	2 cut(s)	5, 313
HapII	CCGG	1 cut(s)	746
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	4 cut(s)	208, 397, 689, 1008
Hpy166II	GTNNAC	3 cut(s)	299, 616, 1073
Hpy188I	TCNGA	3 cut(s)	22, 851, 954
Hpy188III	TCNNGA	3 cut(s)	287, 448, 460
Hpy8I	GTNNAC	3 cut(s)	299, 616, 1073
HpyAV	CCTTC	2 cut(s)	747, 765
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	8 cut(s)	164, 250, 372, 438, 575, 908, 962, 1073
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 83, 268, 581, 751
HpyF3I	CTNAG	3 cut(s)	27, 143, 1076
HpySE526I	ACGT	1 cut(s)	455
Kzo9I	GATC	2 cut(s)	48, 720
LmnI	GCTCC	1 cut(s)	1066
Lsp1109I	GCAGC	3 cut(s)	422, 554, 593
LweI	GCATC	2 cut(s)	13, 237
MaeI	CTAG	3 cut(s)	78, 320, 432
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	5 cut(s)	115, 385, 482, 560, 701
MalI	GATC	2 cut(s)	50, 722
MboI	GATC	2 cut(s)	48, 720
MboII	GAAGA	4 cut(s)	140, 418, 838, 1105
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	3 cut(s)	327, 342, 1075
MluCI	AATT	1 cut(s)	903
MnlI	CCTC	4 cut(s)	352, 386, 643, 673
Mph1103I	ATGCAT	1 cut(s)	252
MseI	TTAA	3 cut(s)	657, 999, 1120
MslI	CAYNNNNRTG	2 cut(s)	122, 800
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	4 cut(s)	183, 264, 645, 716
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	4 cut(s)	183, 264, 645, 716
MwoI	GCNNNNNNNGC	5 cut(s)	32, 83, 268, 581, 751
NdeI	CATATG	1 cut(s)	1054
NdeII	GATC	2 cut(s)	48, 720
NlaIV	GGNNCC	4 cut(s)	180, 261, 339, 766
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	4 cut(s)	115, 385, 482, 701
NsiI	ATGCAT	1 cut(s)	252
NspI	RCATGY	2 cut(s)	305, 922
PciI	ACATGT	1 cut(s)	918
PctI	GAATGC	1 cut(s)	88
PflMI	CCANNNNNTGG	2 cut(s)	93, 459
PfoI	TCCNGGA	2 cut(s)	643, 714
PkrI	GCNGC	4 cut(s)	437, 541, 544, 583
PpuMI	RGGWCCY	2 cut(s)	179, 764
PscI	ACATGT	1 cut(s)	918
Psp5II	RGGWCCY	2 cut(s)	179, 764
Psp6I	CCWGG	4 cut(s)	181, 262, 643, 714
PspFI	CCCAGC	2 cut(s)	174, 292
PspGI	CCWGG	4 cut(s)	181, 262, 643, 714
PspN4I	GGNNCC	4 cut(s)	180, 261, 339, 766
PspPI	GGNCC	5 cut(s)	179, 311, 450, 712, 764
PspPPI	RGGWCCY	2 cut(s)	179, 764
PstNI	CAGNNNCTG	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	720
RsaI	GTAC	2 cut(s)	98, 606
RsaNI	GTAC	2 cut(s)	97, 605
RseI	CAYNNNNRTG	2 cut(s)	122, 800
SaqAI	TTAA	3 cut(s)	657, 999, 1120
SatI	GCNGC	4 cut(s)	436, 540, 543, 582
Sau3AI	GATC	2 cut(s)	48, 720
Sau96I	GGNCC	5 cut(s)	179, 311, 450, 712, 764
ScrFI	CCNGG	4 cut(s)	183, 264, 645, 716
SduI	GDGCHC	3 cut(s)	327, 342, 1075
SfaNI	GCATC	2 cut(s)	13, 237
SfcI	CTRYAG	2 cut(s)	619, 625
SinI	GGWCC	4 cut(s)	179, 450, 712, 764
SmiMI	CAYNNNNRTG	2 cut(s)	122, 800
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
Sse9I	AATT	1 cut(s)	903
SsiI	CCGC	5 cut(s)	102, 271, 540, 968, 1033
SspMI	CTAG	3 cut(s)	78, 320, 432
StyD4I	CCNGG	4 cut(s)	181, 262, 643, 714
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	2 cut(s)	276, 1045
TasI	AATT	1 cut(s)	903
TauI	GCSGC	1 cut(s)	542
Tru1I	TTAA	3 cut(s)	657, 999, 1120
Tru9I	TTAA	3 cut(s)	657, 999, 1120
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	4 cut(s)	115, 385, 482, 701
TseI	GCWGC	3 cut(s)	435, 542, 581
Tsp45I	GTSAC	4 cut(s)	115, 385, 482, 701
TspDTI	ATGAA	4 cut(s)	267, 576, 923, 1022
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	2 cut(s)	93, 459
VneI	GTGCAC	1 cut(s)	1071
VpaK11BI	GGWCC	4 cut(s)	179, 450, 712, 764
XagI	CCTNNNNNAGG	1 cut(s)	759
XceI	RCATGY	2 cut(s)	305, 922
XspI	CTAG	3 cut(s)	78, 320, 432
Zsp2I	ATGCAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.