Rh4BG312800

Lysine histidine transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0006982
Physical Location & Seq
Reverse (-)
48066803 .. 48070269
3467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG312800.1

Sequence Viewer

Length: 1050 bp
ATGTCATGGATCATCACCCTATACACACTATGGCAAATGGTTGAGATGCATGAAATGGTGCCTGGCAAGCGGTTCGATAGGTATCACGAGCTGGGTCAACATGCCTTTGGGCCGAAGCTAGGGCTCTGGATTGTGGTGCCCCAACAGGTAGTTGTTGAGGTTGGTGTTTGCATAGTCTATATGGTGACAGGAGGAAAATCATTGAAGAAAGTCCATGATGTGCTTTGTCCTAGCTGCCAAGATATCAAGACCACATACTGGATTATGATTTTCGCTTCTTCTCACTTTGTGCTCTCCCATCTCCCCAACTTCAACTCCATGTCTGGTATCTCACTTGCCGCAGCAATCATGTCCTTAAGTTACTCAACTATTGCATGGACAACTTCATTACACAAGGGGGTCATACCAGATGTGGACTACAGCTACAGAGCCAAAAGTACCCCTGGAATTGTGTTTAACTTCTTTGGTGGGTTGGGTGATGTAGCATTTGCCTATGCTGGTCACAATGTGGTTCTGGAGATCCAAGCAACCATTCCTTCAACGCCGGATAAGCCTTCCAAGGGTCCCATGTGGAAAGGAGTGGTTGTGGCATACATAGTTGTGGCTCTATGCTACTTCCCTGTTGCTATTGTTGGGTTTTATATCTTCGGAAACAGGGTTGAAGACAACCTCCTCATCTCGCTGGAGAAACCAGCTTGGCTAATTGCAGCTGCTAACCTGTTTGTCGTGGTTCATGTCATTGGAAGCTATCAGGTATTTGCAATGGGGGTGTTTGACATGCTTGAAACCTTTTTGGTCATGAAAATGAACTTCAAACCCAGTTTTGTCCTCCGCTTTGTTACTCGAACTACATATGTTGCAATTACTATGTTTATTGGCATTGCAATCCCTTTCTTCGGTGGCCTTCTCGGATTCTTTGGGGGATTTGCTTTCGCCCCAACAACATATTTCCTTCCCTGCATCATGTGGCTTGCCCTCTACAAACCGAAACCATTCAGTCTATCTTGGTGTGCAAACTGGGTGAGTTGTGTTGATCATGCCTCTGGATAA

Protein Analysis

349

Amino Acids

38.82

Weight (kDa)

8.58

Isoelectric Point (pI)

25.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 3 - 340 1.8e-83 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 58, 136
AccB7I CCANNNNNTGG 1 cut(s) 258
AciI CCGC 3 cut(s) 70, 339, 832
AclWI GGATC 2 cut(s) 17, 514
AdeI CACNNNGTG 2 cut(s) 289, 508
AfaI GTAC 1 cut(s) 439
AfiI CCNNNNNNNGG 4 cut(s) 119, 258, 560, 896
AflII CTTAAG 1 cut(s) 355
AgsI TTSAA 6 cut(s) 205, 313, 540, 662, 785, 814
AjnI CCWGG 2 cut(s) 61, 442
AjuI GAANNNNNNNTTGG 2 cut(s) 516, 548
AluBI AGCT 7 cut(s) 91, 118, 234, 423, 695, 710, 747
AluI AGCT 7 cut(s) 91, 118, 234, 423, 695, 710, 747
Alw21I GWGCWC 1 cut(s) 294
AlwI GGATC 2 cut(s) 17, 514
AoxI GGCC 2 cut(s) 110, 901
ApeKI GCWGC 4 cut(s) 234, 341, 707, 710
Asp700I GAANNNNTTC 1 cut(s) 992
AspS9I GGNCC 2 cut(s) 110, 563
AsuHPI GGTGA 4 cut(s) 7, 196, 488, 1033
AvaII GGWCC 1 cut(s) 563
BaeGI GKGCMC 1 cut(s) 141
BanI GGYRCC 2 cut(s) 58, 136
BanII GRGCYC 1 cut(s) 126
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 4 cut(s) 221, 353, 697, 719
BccI CCATC 1 cut(s) 306
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciT130I CCWGG 2 cut(s) 63, 444
BclI TGATCA 1 cut(s) 1033
BfaI CTAG 2 cut(s) 119, 231
BfmI CTRYAG 2 cut(s) 418, 424
BfrI CTTAAG 1 cut(s) 355
BisI GCNGC 5 cut(s) 235, 339, 342, 708, 711
BlsI GCNGC 5 cut(s) 236, 340, 343, 709, 712
Bme1390I CCNGG 2 cut(s) 63, 444
Bme18I GGWCC 1 cut(s) 563
BmgT120I GGNCC 2 cut(s) 110, 563
BmiI GGNNCC 4 cut(s) 60, 138, 564, 565
BmrFI CCNGG 2 cut(s) 63, 444
BmrI ACTGGG 2 cut(s) 813, 1027
BmsI GCATC 2 cut(s) 36, 969
BmuI ACTGGG 2 cut(s) 813, 1027
BpiI GAAGAC 1 cut(s) 669
BpmI CTGGAG 2 cut(s) 536, 704
BsaBI GATNNNNATC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 442, 558
BsaXI ACNNNNNCTCC 4 cut(s) 299, 329, 570, 600
Bsc4I CCNNNNNNNGG 4 cut(s) 119, 258, 560, 896
Bse1I ACTGG 3 cut(s) 263, 819, 1022
Bse3DI GCAATG 2 cut(s) 768, 879
Bse8I GATNNNNATC 1 cut(s) 81
BseBI CCWGG 2 cut(s) 63, 444
BseDI CCNNGG 2 cut(s) 442, 558
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 4 cut(s) 119, 258, 560, 896
BseMI GCAATG 2 cut(s) 768, 879
BseNI ACTGG 3 cut(s) 263, 819, 1022
BseRI GAGGAG 1 cut(s) 662
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 4 cut(s) 221, 353, 697, 719
BseYI CCCAGC 1 cut(s) 91
BshFI GGCC 2 cut(s) 112, 903
BshNI GGYRCC 2 cut(s) 58, 136
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 1 cut(s) 545
BslFI GGGAC 1 cut(s) 549
BslI CCNNNNNNNGG 4 cut(s) 119, 258, 560, 896
BsmFI GGGAC 1 cut(s) 549
BsnI GGCC 2 cut(s) 112, 903
Bsp1286I GDGCHC 3 cut(s) 126, 141, 294
Bsp143I GATC 3 cut(s) 9, 519, 1033
BspACI CCGC 3 cut(s) 70, 339, 832
BspANI GGCC 2 cut(s) 112, 903
BspHI TCATGA 1 cut(s) 798
BspLI GGNNCC 4 cut(s) 60, 138, 564, 565
BspPI GGATC 2 cut(s) 17, 514
BspT107I GGYRCC 2 cut(s) 58, 136
BspTI CTTAAG 1 cut(s) 355
BsrDI GCAATG 2 cut(s) 768, 879
BsrI ACTGG 3 cut(s) 263, 819, 1022
BssECI CCNNGG 2 cut(s) 442, 558
BssMI GATC 3 cut(s) 9, 519, 1033
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 2 cut(s) 63, 444
BstAFI CTTAAG 1 cut(s) 355
BstC8I GCNNGC 2 cut(s) 68, 972
BstKTI GATC 3 cut(s) 12, 522, 1036
BstMBI GATC 3 cut(s) 9, 519, 1033
BstMWI GCNNNNNNNGC 2 cut(s) 67, 550
BstNI CCWGG 2 cut(s) 63, 444
BstNSI RCATGY 2 cut(s) 104, 781
BstSCI CCNGG 2 cut(s) 61, 442
BstSFI CTRYAG 2 cut(s) 418, 424
BstSLI GKGCMC 1 cut(s) 141
BstV1I GCAGC 4 cut(s) 221, 353, 697, 719
BstV2I GAAGAC 1 cut(s) 669
BstX2I RGATCY 1 cut(s) 519
BstYI RGATCY 1 cut(s) 519
BsuRI GGCC 2 cut(s) 112, 903
Cac8I GCNNGC 2 cut(s) 68, 972
CciI TCATGA 1 cut(s) 798
Cfr13I GGNCC 2 cut(s) 110, 563
Csp6I GTAC 1 cut(s) 438
CviQI GTAC 1 cut(s) 438
DpnI GATC 3 cut(s) 11, 521, 1035
DpnII GATC 3 cut(s) 9, 519, 1033
DraIII CACNNNGTG 2 cut(s) 289, 508
Eco130I CCWWGG 1 cut(s) 558
Eco24I GRGCYC 1 cut(s) 126
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 563
EcoO109I RGGNCCY 1 cut(s) 563
EcoRII CCWGG 2 cut(s) 61, 442
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 558
EcoT22I ATGCAT 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 558
FaqI GGGAC 1 cut(s) 549
FauNDI CATATG 1 cut(s) 853
FbaI TGATCA 1 cut(s) 1033
Fnu4HI GCNGC 5 cut(s) 235, 339, 342, 708, 711
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 5 cut(s) 235, 339, 342, 708, 711
FspBI CTAG 2 cut(s) 119, 231
GluI GCNGC 5 cut(s) 235, 339, 342, 708, 711
GsaI CCCAGC 1 cut(s) 95
GsuI CTGGAG 2 cut(s) 536, 704
HaeIII GGCC 2 cut(s) 112, 903
HapII CCGG 1 cut(s) 545
HincII GTYRAC 1 cut(s) 98
HindII GTYRAC 1 cut(s) 98
HinfI GANTC 1 cut(s) 912
HpaII CCGG 1 cut(s) 545
HphI GGTGA 4 cut(s) 7, 196, 488, 1033
Hpy166II GTNNAC 2 cut(s) 98, 415
Hpy188I TCNGA 2 cut(s) 650, 911
Hpy188III TCNNGA 6 cut(s) 86, 127, 247, 515, 799, 1044
Hpy8I GTNNAC 2 cut(s) 98, 415
HpyAV CCTTC 4 cut(s) 546, 564, 914, 962
HpyCH4V TGCA 9 cut(s) 49, 171, 374, 707, 761, 860, 884, 960, 1013
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 550
KflI GGGWCCC 1 cut(s) 563
Ksp22I TGATCA 1 cut(s) 1033
Kzo9I GATC 3 cut(s) 9, 519, 1033
Lsp1109I GCAGC 4 cut(s) 221, 353, 697, 719
LweI GCATC 2 cut(s) 36, 969
MaeI CTAG 2 cut(s) 119, 231
MaeIII GTNAC 4 cut(s) 184, 359, 500, 838
MalI GATC 3 cut(s) 11, 521, 1035
MboI GATC 3 cut(s) 9, 519, 1033
MboII GAAGA 5 cut(s) 217, 270, 637, 674, 886
MflI RGATCY 1 cut(s) 519
MhlI GDGCHC 3 cut(s) 126, 141, 294
MluCI AATT 3 cut(s) 447, 702, 861
MnlI CCTC 6 cut(s) 151, 185, 680, 683, 839, 986
Mph1103I ATGCAT 1 cut(s) 51
MroXI GAANNNNTTC 1 cut(s) 992
MseI TTAA 2 cut(s) 356, 456
MslI CAYNNNNRTG 2 cut(s) 599, 803
MspA1I CMGCKG 1 cut(s) 710
MspCI CTTAAG 1 cut(s) 355
MspI CCGG 1 cut(s) 545
MspR9I CCNGG 2 cut(s) 63, 444
MvaI CCWGG 2 cut(s) 63, 444
MwoI GCNNNNNNNGC 2 cut(s) 67, 550
NdeI CATATG 1 cut(s) 853
NdeII GATC 3 cut(s) 9, 519, 1033
NlaIV GGNNCC 4 cut(s) 60, 138, 564, 565
NmuCI GTSAC 2 cut(s) 184, 500
NsiI ATGCAT 1 cut(s) 51
NspI RCATGY 2 cut(s) 104, 781
PagI TCATGA 1 cut(s) 798
PdmI GAANNNNTTC 1 cut(s) 992
PfeI GAWTC 1 cut(s) 912
PflMI CCANNNNNTGG 1 cut(s) 258
PkrI GCNGC 5 cut(s) 236, 340, 343, 709, 712
PpuMI RGGWCCY 1 cut(s) 563
Psp5II RGGWCCY 1 cut(s) 563
Psp6I CCWGG 2 cut(s) 61, 442
PspFI CCCAGC 1 cut(s) 91
PspGI CCWGG 2 cut(s) 61, 442
PspN4I GGNNCC 4 cut(s) 60, 138, 564, 565
PspPI GGNCC 2 cut(s) 110, 563
PspPPI RGGWCCY 1 cut(s) 563
PsuI RGATCY 1 cut(s) 519
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 1 cut(s) 439
RsaNI GTAC 1 cut(s) 438
RseI CAYNNNNRTG 2 cut(s) 599, 803
SaqAI TTAA 2 cut(s) 356, 456
SatI GCNGC 5 cut(s) 235, 339, 342, 708, 711
Sau3AI GATC 3 cut(s) 9, 519, 1033
Sau96I GGNCC 2 cut(s) 110, 563
ScrFI CCNGG 2 cut(s) 63, 444
SduI GDGCHC 3 cut(s) 126, 141, 294
SfaNI GCATC 2 cut(s) 36, 969
SfcI CTRYAG 2 cut(s) 418, 424
SinI GGWCC 1 cut(s) 563
SmiMI CAYNNNNRTG 2 cut(s) 599, 803
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
Sse9I AATT 3 cut(s) 447, 702, 861
SsiI CCGC 3 cut(s) 70, 339, 832
SspMI CTAG 2 cut(s) 119, 231
StyD4I CCNGG 2 cut(s) 61, 442
StyI CCWWGG 1 cut(s) 558
TaqI TCGA 2 cut(s) 75, 844
TasI AATT 3 cut(s) 447, 702, 861
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 1 cut(s) 912
Tru1I TTAA 2 cut(s) 356, 456
Tru9I TTAA 2 cut(s) 356, 456
TseFI GTSAC 2 cut(s) 184, 500
TseI GCWGC 4 cut(s) 234, 341, 707, 710
Tsp45I GTSAC 2 cut(s) 184, 500
TspDTI ATGAA 5 cut(s) 66, 375, 722, 815, 821
Van91I CCANNNNNTGG 1 cut(s) 258
Vha464I CTTAAG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 563
XceI RCATGY 2 cut(s) 104, 781
XmnI GAANNNNTTC 1 cut(s) 992
XspI CTAG 2 cut(s) 119, 231
Zsp2I ATGCAT 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.