Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006982

Physical Location & Seq

Genomic Coordinates Reverse (-)

26578250 .. 26586702

Gene Structure 8453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g24381.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGTTGCGGGTACTTTGTCAGATGCTGAGCTTGCAAGACAGAAGCAGATCGATGATTGGCTTCCCATCACTTCTTCAAGGAATGCCAAATGGTGGTACTCGGCTTTCCACAATGTCACTGCCATGGTTGGGGCTGGTGTCCTCAGTCTTCCTTTTGCCCTTGCAGAGCTTGGCTGGGGTCCTGGAATTGCTATCCTTATTATGTCATGGGTGATCACCTTATACACACTGTGGCAAATGGTTGAGATGCATGAAATGGTGCCTGGCAAGCGGTTCGATAGGTATCACGAGCTAGGTCAACATGCCTTTGGGCCAAAGCTAGGGCTCTGGATTGTGGTGCCCCAACAAGTAATTGTTGAGGTTGGTGTTTGCATAGTCTATATGGTAACAGGAGGAAAATCACTGAAGAAAGTTCATGATTTGCTTTGTCCTAGCTGCAAAGATATCAAGACCTCATATTGGATTATGATTTTCGCTTCTTGTCACTTTGTGCTCTCCCATCTCCCAAACTTCAACTCCATGTCTGGTATCTCACTCGCTGCAGCAATCATGTCCTTGAGTTACTCAACTATTGCATGGACAGCTGCAGCACACAAGGGGGTCGTACCAGATGTGGACTACAGCTACAAAGCCACAACTACTTCCGGAACTATGTTCAACTTCTTTGGTGGGTTGGGAGAGGTAGCATTTGCCTACGCTGGTCACAATGTGGTTCTGGAGATCCAAGCAACCATTCCTTCGACGCCGGAGAAGCCTTCCAAGGGTCCAATGTGGAAAGGAGTGGTTGTGGCATACATAGTCGTGGCTCTTTGTTACTTCCCTGTTGCCATTGTTGGGTTTTATGTCTACGGAAACAGCGTTGAAGACAACATCCTCATCTCACTTGAGAAACCTGCCTGGCTAATTGCAGCTGCTAACTTGTTCGTCGTGGTTCATGTCATTGGAAGCTATCAGGTATTTGCAATGGGGGTGTTTGACATGATTGAAACCTTTTTGGTCATCAAAATGAAATTCAGACCTAGCTTCGTTCTCCGATTTGTTACTCGAACTACATATGTTGCAATTACTATGTTCATTGGCATAGCAATCCCTTTCTTCGGTGGCCTTCTCGGATTTTTTGGGGGATTTGCTTTCGCCCCAACAACATACTTTCTTCCCTGCATCATGTGGCTTGCCATCTACAAACCAAAACCATTTAGTCTATCTTGGTGTGTTAACTGGGTCTGTATCGTTCTTGGAGTTCTTTTGATGATTCTTGCTCCTATCGGTGCACTAAGGAACATCATACTGCAAGCGAAAAACTACGAGTTCTTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

440

Amino Acids

48.59

Weight (kDa)

8.64

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	28 - 424	8.8e-107	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	33 - 143	4e-08	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24400 AT1G67640
fragaria_vesca	FvH4_4g24381 FvH4_4g24381 FvH4_4g24390
malus_domestica	MD13G1111700.v1.1 MD16G1111300.v1.1
prunus_persica	Prupe.1G233800_v2.0.a1
pyrus_communis	pycom16g09430
rosa_chinensis	RchiOBHm_Chr4g0431231 RchiOBHm_Chr4g0431241
rosa_laevigata	RLG00000006916 RLG00000006917
rosa_multiflora	Rmu_sc0005258.1_g000008 Rmu_sc0039160.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372770 Rroxscaffold_5G00372780
rosa_rugosa	Rorug04G0249400 Rorug04G0249500 Rorug04G0249600
rosa_samantha	Rh4AG305500 Rh4BG312800 Rh4BG312900
rosa_wichuraiana	Rw4G026550 Rw4G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	901
AccB1I	GGYRCC	2 cut(s)	259, 337
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	846
AccIII	TCCGGA	1 cut(s)	644
AciI	CCGC	2 cut(s)	8, 271
AclWI	GGATC	1 cut(s)	715
AcsI	RAATTY	1 cut(s)	1010
AcuI	CTGAAG	1 cut(s)	425
AcyI	GRCGYC	1 cut(s)	743
AdeI	CACNNNGTG	3 cut(s)	231, 490, 709
AfaI	GTAC	3 cut(s)	13, 98, 606
AfiI	CCNNNNNNNGG	7 cut(s)	93, 129, 320, 459, 761, 834, 1097
AgsI	TTSAA	5 cut(s)	78, 514, 658, 863, 986
AjnI	CCWGG	3 cut(s)	181, 262, 896
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
Alw21I	GWGCWC	2 cut(s)	495, 1273
Alw44I	GTGCAC	1 cut(s)	1269
AlwI	GGATC	1 cut(s)	715
AlwNI	CAGNNNCTG	1 cut(s)	26
Aor13HI	TCCGGA	1 cut(s)	644
AoxI	GGCC	2 cut(s)	311, 1102
ApaLI	GTGCAC	1 cut(s)	1269
ApeKI	GCWGC	7 cut(s)	435, 539, 542, 584, 587, 908, 911
ApoI	RAATTY	1 cut(s)	1010
AspS9I	GGNCC	3 cut(s)	179, 311, 764
AsuHPI	GGTGA	2 cut(s)	208, 223
AvaII	GGWCC	2 cut(s)	179, 764
BaeGI	GKGCMC	2 cut(s)	342, 1273
BanI	GGYRCC	2 cut(s)	259, 337
BanII	GRGCYC	1 cut(s)	327
BauI	CACGAG	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	140, 870
Bbv12I	GWGCWC	2 cut(s)	495, 1273
BbvI	GCAGC	7 cut(s)	422, 526, 554, 571, 599, 898, 920
BccI	CCATC	3 cut(s)	74, 507, 1184
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	3 cut(s)	183, 264, 898
BclI	TGATCA	1 cut(s)	213
BfaI	CTAG	4 cut(s)	293, 320, 432, 1020
BfmI	CTRYAG	3 cut(s)	540, 585, 619
BfuAI	ACCTGC	1 cut(s)	901
BisI	GCNGC	7 cut(s)	436, 540, 543, 585, 588, 909, 912
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	7 cut(s)	437, 541, 544, 586, 589, 910, 913
Bme1390I	CCNGG	3 cut(s)	183, 264, 898
Bme18I	GGWCC	2 cut(s)	179, 764
BmgT120I	GGNCC	3 cut(s)	179, 311, 764
BmiI	GGNNCC	4 cut(s)	180, 261, 339, 765
BmrFI	CCNGG	3 cut(s)	183, 264, 898
BmrI	ACTGGG	1 cut(s)	1228
BmsI	GCATC	3 cut(s)	13, 237, 1170
BmuI	ACTGGG	1 cut(s)	1228
BpiI	GAAGAC	2 cut(s)	140, 870
BplI	GAGNNNNNCTC	1 cut(s)	1298
BpmI	CTGGAG	1 cut(s)	737
Bpu1102I	GCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	2 cut(s)	577, 905
Bsa29I	ATCGAT	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	743
BsaJI	CCNNGG	2 cut(s)	123, 759
BsaWI	WCCGGW	1 cut(s)	644
BsaXI	ACNNNNNCTCC	4 cut(s)	500, 530, 771, 801
Bsc4I	CCNNNNNNNGG	7 cut(s)	93, 129, 320, 459, 761, 834, 1097
Bse1I	ACTGG	1 cut(s)	1223
Bse3DI	GCAATG	1 cut(s)	969
Bse8I	GATNNNNATC	1 cut(s)	282
BseAI	TCCGGA	1 cut(s)	644
BseBI	CCWGG	3 cut(s)	183, 264, 898
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	123, 759
BseGI	GGATG	1 cut(s)	870
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	7 cut(s)	93, 129, 320, 459, 761, 834, 1097
BseMI	GCAATG	1 cut(s)	969
BseMII	CTCAG	2 cut(s)	18, 157
BseNI	ACTGG	1 cut(s)	1223
BseSI	GKGCMC	2 cut(s)	342, 1273
BseXI	GCAGC	7 cut(s)	422, 526, 554, 571, 599, 898, 920
BseYI	CCCAGC	1 cut(s)	174
BshFI	GGCC	2 cut(s)	313, 1104
BshNI	GGYRCC	2 cut(s)	259, 337
BshVI	ATCGAT	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	495, 1273
BsiSI	CCGG	2 cut(s)	645, 746
BslI	CCNNNNNNNGG	7 cut(s)	93, 129, 320, 459, 761, 834, 1097
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	313, 1104
Bsp1286I	GDGCHC	4 cut(s)	327, 342, 495, 1273
Bsp13I	TCCGGA	1 cut(s)	644
Bsp143I	GATC	3 cut(s)	48, 213, 720
Bsp1720I	GCTNAGC	1 cut(s)	27
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	2 cut(s)	8, 271
BspANI	GGCC	2 cut(s)	313, 1104
BspCNI	CTCAG	2 cut(s)	19, 156
BspDI	ATCGAT	1 cut(s)	51
BspEI	TCCGGA	1 cut(s)	644
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	4 cut(s)	180, 261, 339, 765
BspMAI	CTGCAG	2 cut(s)	544, 589
BspMI	ACCTGC	1 cut(s)	901
BspPI	GGATC	1 cut(s)	715
BspT107I	GGYRCC	2 cut(s)	259, 337
BsrDI	GCAATG	1 cut(s)	969
BsrI	ACTGG	1 cut(s)	1223
BssECI	CCNNGG	2 cut(s)	123, 759
BssMI	GATC	3 cut(s)	48, 213, 720
BssNI	GRCGYC	1 cut(s)	743
BssSI	CACGAG	1 cut(s)	287
BssT1I	CCWWGG	2 cut(s)	123, 759
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	3 cut(s)	183, 264, 898
Bst4CI	ACNGT	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	743
BstC8I	GCNNGC	4 cut(s)	33, 269, 1173, 1293
BstDEI	CTNAG	3 cut(s)	27, 143, 1274
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	870
BstKTI	GATC	3 cut(s)	51, 216, 723
BstMBI	GATC	3 cut(s)	48, 213, 720
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 268, 581, 751
BstNI	CCWGG	3 cut(s)	183, 264, 898
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	181, 262, 896
BstSFI	CTRYAG	3 cut(s)	540, 585, 619
BstSLI	GKGCMC	2 cut(s)	342, 1273
BstV1I	GCAGC	7 cut(s)	422, 526, 554, 571, 599, 898, 920
BstV2I	GAAGAC	2 cut(s)	140, 870
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
Bsu15I	ATCGAT	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	313, 1104
BsuTUI	ATCGAT	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	870
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	3 cut(s)	117, 227, 401
BveI	ACCTGC	1 cut(s)	901
Cac8I	GCNNGC	4 cut(s)	33, 269, 1173, 1293
CaiI	CAGNNNCTG	1 cut(s)	26
CciI	TCATGA	1 cut(s)	415
Cfr13I	GGNCC	3 cut(s)	179, 311, 764
ClaI	ATCGAT	1 cut(s)	51
CseI	GACGC	1 cut(s)	751
Csp6I	GTAC	3 cut(s)	12, 97, 605
CviQI	GTAC	3 cut(s)	12, 97, 605
DdeI	CTNAG	3 cut(s)	27, 143, 1274
DpnI	GATC	3 cut(s)	50, 215, 722
DpnII	GATC	3 cut(s)	48, 213, 720
DraIII	CACNNNGTG	3 cut(s)	231, 490, 709
Eco130I	CCWWGG	2 cut(s)	123, 759
Eco24I	GRGCYC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	179, 764
Eco57I	CTGAAG	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	3 cut(s)	181, 262, 896
EcoRV	GATATC	1 cut(s)	445
EcoT14I	CCWWGG	2 cut(s)	123, 759
EcoT22I	ATGCAT	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	2 cut(s)	123, 759
FauNDI	CATATG	1 cut(s)	1054
FbaI	TGATCA	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	7 cut(s)	436, 540, 543, 585, 588, 909, 912
FokI	GGATG	1 cut(s)	857
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	7 cut(s)	436, 540, 543, 585, 588, 909, 912
FspBI	CTAG	4 cut(s)	293, 320, 432, 1020
GluI	GCNGC	7 cut(s)	436, 540, 543, 585, 588, 909, 912
GsaI	CCCAGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	737
HaeIII	GGCC	2 cut(s)	313, 1104
HapII	CCGG	2 cut(s)	645, 746
HgaI	GACGC	1 cut(s)	751
Hin1I	GRCGYC	1 cut(s)	743
HincII	GTYRAC	2 cut(s)	299, 1216
HindII	GTYRAC	2 cut(s)	299, 1216
HinfI	GANTC	1 cut(s)	1252
HpaI	GTTAAC	1 cut(s)	1216
HpaII	CCGG	2 cut(s)	645, 746
HphI	GGTGA	2 cut(s)	208, 223
Hpy166II	GTNNAC	5 cut(s)	299, 616, 847, 1216, 1271
Hpy188I	TCNGA	4 cut(s)	22, 1016, 1034, 1112
Hpy188III	TCNNGA	6 cut(s)	287, 328, 416, 448, 645, 716
Hpy8I	GTNNAC	5 cut(s)	299, 616, 847, 1216, 1271
Hpy99I	CGWCG	2 cut(s)	745, 929
HpyAV	CCTTC	3 cut(s)	747, 765, 1115
HpyCH4III	ACNGT	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 268, 581, 751
HpyF3I	CTNAG	3 cut(s)	27, 143, 1274
Hsp92I	GRCGYC	1 cut(s)	743
Kpn2I	TCCGGA	1 cut(s)	644
Ksp22I	TGATCA	1 cut(s)	213
KspAI	GTTAAC	1 cut(s)	1216
Kzo9I	GATC	3 cut(s)	48, 213, 720
LmnI	GCTCC	1 cut(s)	1264
Lsp1109I	GCAGC	7 cut(s)	422, 526, 554, 571, 599, 898, 920
LweI	GCATC	3 cut(s)	13, 237, 1170
MaeI	CTAG	4 cut(s)	293, 320, 432, 1020
MaeIII	GTNAC	7 cut(s)	115, 385, 482, 560, 701, 812, 1039
MalI	GATC	3 cut(s)	50, 215, 722
MboI	GATC	3 cut(s)	48, 213, 720
MboII	GAAGA	7 cut(s)	66, 140, 418, 875, 1087, 1145, 1303
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	4 cut(s)	327, 342, 495, 1273
MluCI	AATT	5 cut(s)	186, 351, 903, 1010, 1062
MnlI	CCTC	6 cut(s)	152, 352, 386, 463, 673, 884
Mph1103I	ATGCAT	1 cut(s)	252
MroI	TCCGGA	1 cut(s)	644
MseI	TTAA	1 cut(s)	1215
MslI	CAYNNNNRTG	3 cut(s)	122, 800, 1004
MspA1I	CMGCKG	2 cut(s)	584, 911
MspI	CCGG	2 cut(s)	645, 746
MspR9I	CCNGG	3 cut(s)	183, 264, 898
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	3 cut(s)	183, 264, 898
MwoI	GCNNNNNNNGC	4 cut(s)	32, 268, 581, 751
NcoI	CCATGG	1 cut(s)	123
NdeI	CATATG	1 cut(s)	1054
NdeII	GATC	3 cut(s)	48, 213, 720
NlaIV	GGNNCC	4 cut(s)	180, 261, 339, 765
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	3 cut(s)	115, 482, 701
NsiI	ATGCAT	1 cut(s)	252
NspI	RCATGY	1 cut(s)	305
PagI	TCATGA	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	1 cut(s)	855
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	1252
PflMI	CCANNNNNTGG	1 cut(s)	93
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	7 cut(s)	437, 541, 544, 586, 589, 910, 913
PpuMI	RGGWCCY	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	179
Psp6I	CCWGG	3 cut(s)	181, 262, 896
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	3 cut(s)	181, 262, 896
PspN4I	GGNNCC	4 cut(s)	180, 261, 339, 765
PspPI	GGNCC	3 cut(s)	179, 311, 764
PspPPI	RGGWCCY	1 cut(s)	179
PstI	CTGCAG	2 cut(s)	544, 589
PstNI	CAGNNNCTG	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	720
PvuII	CAGCTG	2 cut(s)	584, 911
RsaI	GTAC	3 cut(s)	13, 98, 606
RsaNI	GTAC	3 cut(s)	12, 97, 605
RseI	CAYNNNNRTG	3 cut(s)	122, 800, 1004
SaqAI	TTAA	1 cut(s)	1215
SatI	GCNGC	7 cut(s)	436, 540, 543, 585, 588, 909, 912
Sau3AI	GATC	3 cut(s)	48, 213, 720
Sau96I	GGNCC	3 cut(s)	179, 311, 764
ScrFI	CCNGG	3 cut(s)	183, 264, 898
SduI	GDGCHC	4 cut(s)	327, 342, 495, 1273
SfaNI	GCATC	3 cut(s)	13, 237, 1170
SfcI	CTRYAG	3 cut(s)	540, 585, 619
SinI	GGWCC	2 cut(s)	179, 764
SmiMI	CAYNNNNRTG	3 cut(s)	122, 800, 1004
SmlI	CTYRAG	2 cut(s)	556, 884
SmoI	CTYRAG	2 cut(s)	556, 884
Sse9I	AATT	5 cut(s)	186, 351, 903, 1010, 1062
SsiI	CCGC	2 cut(s)	8, 271
SspMI	CTAG	4 cut(s)	293, 320, 432, 1020
StyD4I	CCNGG	3 cut(s)	181, 262, 896
StyI	CCWWGG	2 cut(s)	123, 759
TaaI	ACNGT	1 cut(s)	231
TaqI	TCGA	4 cut(s)	51, 276, 740, 1045
TasI	AATT	5 cut(s)	186, 351, 903, 1010, 1062
TfiI	GAWTC	1 cut(s)	1252
Tru1I	TTAA	1 cut(s)	1215
Tru9I	TTAA	1 cut(s)	1215
TscAI	CASTG	3 cut(s)	124, 234, 408
TseFI	GTSAC	3 cut(s)	115, 482, 701
TseI	GCWGC	7 cut(s)	435, 539, 542, 584, 587, 908, 911
Tsp45I	GTSAC	3 cut(s)	115, 482, 701
TspDTI	ATGAA	5 cut(s)	267, 404, 923, 1022, 1063
TspGWI	ACGGA	1 cut(s)	864
TspRI	CASTG	3 cut(s)	124, 234, 408
Van91I	CCANNNNNTGG	1 cut(s)	93
VneI	GTGCAC	1 cut(s)	1269
VpaK11BI	GGWCC	2 cut(s)	179, 764
XapI	RAATTY	1 cut(s)	1010
XceI	RCATGY	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	846
XspI	CTAG	4 cut(s)	293, 320, 432, 1020
Zsp2I	ATGCAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.