Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006982

Physical Location & Seq

Genomic Coordinates Reverse (-)

48072384 .. 48075462

Gene Structure 3079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG312900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGATAACCATAAATTCTTACCAAGTAATGCAGACATGCAATCTGGTATCATTGATTTCTACCCTGTGTTCTTGGACTCTTGTTTGTAGTTACTCAACTATTGCATGGGCAGCTTCATTACACAAGGGGGTCGTACCAGATGTGGACTACAGCTACAGAGCCTCAACTACTCCTGGAACTGTGCTTAACTTCTTTGGTGGGTTGGGTGAGGTAGCATTTGCCTATGCTGGTCACAATGTGGTCCTGGAGATCCAAGCAACCATTCCTTCAACGCCGGAAAAGCCTTCCAAAGGTCCCATGTGGAAAGGAGTGCTTGTGGCATACATAGTTGTGGCTATATGCTACTTCCCTGTTGCTATTGTTGGGTTTTATGTCTTCGGAAATAGGGTTGATGACAACATACTCATCTCGCTGGAGAAACCAGCTTGGCTAATTGCAACTGCTAACATGTTTGTCGTAGTTCATGTGATTGGAAGCTATCAGATATATGCAATGGCGGTGTTTGACATGATTGAAACCTTTTTGGTTAAAAAAATGAACTTCTCACCCAGTTTCGTTCTCCGCTTTTTTACTCGAACTACATATGTTGCATTTACTATGATCGTTGCCATAGCAATCCCTTTCTTCGGTGGCCTTCTCGGATTCTTTGGGGGATTTGCTTTCGCCCCAACAACATATTACCTTCCCTGCATCATGTGGCTTGCCCTCTACAAACCGAAACCATTCAGTCTATCTTGGTGTGCAAACTGGGTAAGTTCTGTTGATCATGCCTCGGTAAGTTGTTTTCCTTGTTCTTTATGCTTCATACGTCTACTCACTTATTTTTCTCATTCATTTCAGTTTTGTATCATTTGTGGCGTCACTCTGATGATTCTAGCTCCCATTGGTGCACTAAGGAACATCATCATCAAAGCGAAAACCTACGAGTTCTTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

312

Amino Acids

34.65

Weight (kDa)

8.58

Isoelectric Point (pI)

26.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	15 - 269	1.4e-53	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24400 AT1G67640
fragaria_vesca	FvH4_4g24381 FvH4_4g24381 FvH4_4g24390
malus_domestica	MD13G1111700.v1.1 MD16G1111300.v1.1
prunus_persica	Prupe.1G233800_v2.0.a1
pyrus_communis	pycom16g09430
rosa_chinensis	RchiOBHm_Chr4g0431231 RchiOBHm_Chr4g0431241
rosa_laevigata	RLG00000006916 RLG00000006917
rosa_multiflora	Rmu_sc0005258.1_g000008 Rmu_sc0039160.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372770 Rroxscaffold_5G00372780
rosa_rugosa	Rorug04G0249400 Rorug04G0249500 Rorug04G0249600
rosa_samantha	Rh4AG305500 Rh4BG312800 Rh4BG312900
rosa_wichuraiana	Rw4G026550 Rw4G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	811
AciI	CCGC	2 cut(s)	497, 562
AclWI	GGATC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	858
AdeI	CACNNNGTG	1 cut(s)	238
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	2 cut(s)	290, 626
AflIII	ACRYGT	1 cut(s)	447
AgsI	TTSAA	2 cut(s)	270, 515
AjnI	CCWGG	2 cut(s)	172, 243
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	5 cut(s)	113, 153, 425, 477, 878
AluI	AGCT	5 cut(s)	113, 153, 425, 477, 878
Alw21I	GWGCWC	1 cut(s)	892
Alw44I	GTGCAC	1 cut(s)	888
AlwI	GGATC	1 cut(s)	244
AoxI	GGCC	1 cut(s)	631
ApaLI	GTGCAC	1 cut(s)	888
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	13
Asp700I	GAANNNNTTC	1 cut(s)	722
AspS9I	GGNCC	2 cut(s)	241, 293
AsuHPI	GGTGA	2 cut(s)	218, 537
AvaII	GGWCC	2 cut(s)	241, 293
BaeGI	GKGCMC	1 cut(s)	892
BbsI	GAAGAC	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	892
BbvI	GCAGC	1 cut(s)	122
BciT130I	CCWGG	2 cut(s)	174, 245
BclI	TGATCA	1 cut(s)	763
BfaI	CTAG	1 cut(s)	875
BfmI	CTRYAG	2 cut(s)	148, 154
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	2 cut(s)	174, 245
Bme18I	GGWCC	2 cut(s)	241, 293
BmgT120I	GGNCC	2 cut(s)	241, 293
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	2 cut(s)	174, 245
BmrI	ACTGGG	2 cut(s)	543, 757
BmsI	GCATC	1 cut(s)	699
BmuI	ACTGGG	2 cut(s)	543, 757
BpiI	GAAGAC	1 cut(s)	367
BplI	GAGNNNNNCTC	1 cut(s)	917
BpmI	CTGGAG	2 cut(s)	266, 434
BsaHI	GRCGYC	1 cut(s)	858
BsaJI	CCNNGG	1 cut(s)	771
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 626
Bse1I	ACTGG	2 cut(s)	549, 752
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	174, 245
BseDI	CCNNGG	1 cut(s)	771
BseLI	CCNNNNNNNGG	2 cut(s)	290, 626
BseMI	GCAATG	1 cut(s)	498
BseNI	ACTGG	2 cut(s)	549, 752
BseSI	GKGCMC	1 cut(s)	892
BseXI	GCAGC	1 cut(s)	122
BshFI	GGCC	1 cut(s)	633
BsiHKAI	GWGCWC	1 cut(s)	892
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	290, 626
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	633
Bsp1286I	GDGCHC	1 cut(s)	892
Bsp143I	GATC	3 cut(s)	249, 600, 763
BspACI	CCGC	2 cut(s)	497, 562
BspANI	GGCC	1 cut(s)	633
BspLI	GGNNCC	1 cut(s)	295
BspPI	GGATC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	549, 752
BssECI	CCNNGG	1 cut(s)	771
BssMI	GATC	3 cut(s)	249, 600, 763
BssNI	GRCGYC	1 cut(s)	858
Bst2UI	CCWGG	2 cut(s)	174, 245
Bst4CI	ACNGT	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	858
BstC8I	GCNNGC	1 cut(s)	702
BstDEI	CTNAG	1 cut(s)	893
BstENI	CCTNNNNNAGG	1 cut(s)	288
BstKTI	GATC	3 cut(s)	252, 603, 766
BstMBI	GATC	3 cut(s)	249, 600, 763
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 280
BstNI	CCWGG	2 cut(s)	174, 245
BstNSI	RCATGY	2 cut(s)	39, 451
BstSCI	CCNGG	2 cut(s)	172, 243
BstSFI	CTRYAG	2 cut(s)	148, 154
BstSLI	GKGCMC	1 cut(s)	892
BstV1I	GCAGC	1 cut(s)	122
BstV2I	GAAGAC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	633
Cac8I	GCNNGC	1 cut(s)	702
Cfr13I	GGNCC	2 cut(s)	241, 293
CseI	GACGC	1 cut(s)	847
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	8 cut(s)	36, 105, 298, 448, 464, 508, 694, 767
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	893
DpnI	GATC	3 cut(s)	251, 602, 765
DpnII	GATC	3 cut(s)	249, 600, 763
DraIII	CACNNNGTG	1 cut(s)	238
Eco47I	GGWCC	2 cut(s)	241, 293
EcoNI	CCTNNNNNAGG	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	172, 243
FaeI	CATG	8 cut(s)	39, 108, 301, 451, 467, 511, 697, 770
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	8 cut(s)	35, 104, 297, 447, 463, 507, 693, 766
FauNDI	CATATG	1 cut(s)	583
FbaI	TGATCA	1 cut(s)	763
FblI	GTMKAC	1 cut(s)	811
Fnu4HI	GCNGC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	875
GluI	GCNGC	1 cut(s)	111
GsuI	CTGGAG	2 cut(s)	266, 434
HaeIII	GGCC	1 cut(s)	633
HapII	CCGG	1 cut(s)	275
HgaI	GACGC	1 cut(s)	847
Hin1I	GRCGYC	1 cut(s)	858
Hin1II	CATG	8 cut(s)	39, 108, 301, 451, 467, 511, 697, 770
HinfI	GANTC	3 cut(s)	76, 642, 871
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	2 cut(s)	218, 537
Hpy166II	GTNNAC	3 cut(s)	145, 812, 890
Hpy188I	TCNGA	4 cut(s)	380, 483, 641, 867
Hpy8I	GTNNAC	3 cut(s)	145, 812, 890
HpyAV	CCTTC	4 cut(s)	276, 294, 644, 692
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	808
HpyCH4V	TGCA	9 cut(s)	31, 39, 104, 437, 491, 590, 690, 743, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 280
HpyF3I	CTNAG	1 cut(s)	893
HpySE526I	ACGT	1 cut(s)	808
Hsp92I	GRCGYC	1 cut(s)	858
Hsp92II	CATG	8 cut(s)	39, 108, 301, 451, 467, 511, 697, 770
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	3 cut(s)	249, 600, 763
LmnI	GCTCC	1 cut(s)	883
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	1 cut(s)	699
MaeI	CTAG	1 cut(s)	875
MaeII	ACGT	1 cut(s)	808
MaeIII	GTNAC	3 cut(s)	89, 230, 859
MalI	GATC	3 cut(s)	251, 602, 765
MboI	GATC	3 cut(s)	249, 600, 763
MboII	GAAGA	3 cut(s)	367, 616, 922
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	892
MluCI	AATT	2 cut(s)	13, 432
MlyI	GAGTC	1 cut(s)	70
MnlI	CCTC	4 cut(s)	172, 202, 716, 781
MroXI	GAANNNNTTC	1 cut(s)	722
MseI	TTAA	3 cut(s)	186, 528, 937
MslI	CAYNNNNRTG	2 cut(s)	329, 866
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	174, 245
MvaI	CCWGG	2 cut(s)	174, 245
MwoI	GCNNNNNNNGC	2 cut(s)	110, 280
NdeI	CATATG	1 cut(s)	583
NdeII	GATC	3 cut(s)	249, 600, 763
NlaIII	CATG	8 cut(s)	39, 108, 301, 451, 467, 511, 697, 770
NlaIV	GGNNCC	1 cut(s)	295
NmuCI	GTSAC	2 cut(s)	230, 859
NspI	RCATGY	2 cut(s)	39, 451
PciI	ACATGT	1 cut(s)	447
PdmI	GAANNNNTTC	1 cut(s)	722
PfeI	GAWTC	2 cut(s)	642, 871
PfoI	TCCNGGA	2 cut(s)	172, 243
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	293
PscI	ACATGT	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	172, 243
PspGI	CCWGG	2 cut(s)	172, 243
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	2 cut(s)	241, 293
PspPPI	RGGWCCY	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	249
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	2 cut(s)	329, 866
SaqAI	TTAA	3 cut(s)	186, 528, 937
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	3 cut(s)	249, 600, 763
Sau96I	GGNCC	2 cut(s)	241, 293
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	174, 245
SduI	GDGCHC	1 cut(s)	892
SfaNI	GCATC	1 cut(s)	699
SfcI	CTRYAG	2 cut(s)	148, 154
SinI	GGWCC	2 cut(s)	241, 293
SmiMI	CAYNNNNRTG	2 cut(s)	329, 866
Sse9I	AATT	2 cut(s)	13, 432
SsiI	CCGC	2 cut(s)	497, 562
SspMI	CTAG	1 cut(s)	875
StyD4I	CCNGG	2 cut(s)	172, 243
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	811
TaqI	TCGA	1 cut(s)	574
TasI	AATT	2 cut(s)	13, 432
TfiI	GAWTC	2 cut(s)	642, 871
Tru1I	TTAA	3 cut(s)	186, 528, 937
Tru9I	TTAA	3 cut(s)	186, 528, 937
TseFI	GTSAC	2 cut(s)	230, 859
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	2 cut(s)	230, 859
TspDTI	ATGAA	5 cut(s)	105, 452, 551, 793, 822
VneI	GTGCAC	1 cut(s)	888
VpaK11BI	GGWCC	2 cut(s)	241, 293
XagI	CCTNNNNNAGG	1 cut(s)	288
XapI	RAATTY	1 cut(s)	13
XceI	RCATGY	2 cut(s)	39, 451
XmiI	GTMKAC	1 cut(s)	811
XmnI	GAANNNNTTC	1 cut(s)	722
XspI	CTAG	1 cut(s)	875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.