Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006982

Physical Location & Seq

Genomic Coordinates Forward (+)

11844180 .. 11846804

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006916

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGCCGAGGCTGCTCTGTCAGATGCTGAGCTTGCGAGACAGAAGCAGATCAACGATTGGCTTCCCATCACTTCTGCTAGGAATGCCAAATGGTGGTACTCCGCTTTCCACAATGTCACTGCTATGGTTGGGGCTGGTGTCCTCAGTCTTCCTTTTGCCCTTGCAGAGCTTGGCTGGGGTCCTGGTGTGGTTATCCTTATTTTGTCATGGGTCATCACCCTATACACACTATGGCAAATGGTTGAGATGCATGAAATGGTGCCTGGCAAGCGGTTCGATAGGTATCACGAGCTGGGTCAACATGCCTTTGGGCCGAAGCTAGGGCTCTGGGTTGTGGTGCCCCAACAGGTAGTTGTTGAGGTTGGTGTTTGCATAGTCTATATGGTGACAGGAGGAAAATCATTGAAGAAAGTCCATGATGTGCTTTGTCCTAGCTGCAAAGATATCAGGACCACGTTCTGGATTATGATTTTTGCTTCTTGTCACTTTGTGCTTTCCCATCTCCCCAACTTCAACTCCATGTCTGGTATCTCACTCGCCGCAGCAGTCATGTCCTTGAGTTACTCAACTATTGCATGGGCAGCTTCAATACACAAGGGGGTCGTACCAGATGTGGACTACAGCTACAGAGCCTCAACTACTCCTGGAACTGTGCTTAACTTCTTTGGTGGGTTGGGTGAGGTAGCATTTGCCTATGCTGGTCACAATGTGGTCCTGGAGATCCAAGCAACCATTCCTTCAACGCCGGAAAAGCCTTCCAAAGGTCCCATGTGGAAAGGAGTGGTTATGGCATACATAGTTGTGGCTATATGCTACTTCCCTGTTGCTATTGTTGGGTTTTATGTCTTCGGAAATAGGGTTGATGACAACATACTCATCTCGCTGGAGAAACCAGCTTGGCTAATTGCAACTGCTAACATGTTTATATATGCAATGGCGGTGTTTGACATGATTGAAACCTTTTTGGTTAAAAAAATGAACTTCTCACCCAGTTTCGTTCTCCGCTTTTTTACTCGAACTACATATGTTGCATTTACTATGATCGTTGCCATAGCAATCCCTTTCTTCGGTGGCCTTCTCGGATTCTTTGGGGGATTTGCTTTCGCCCCAACAACATATTACCTTCCCTGCATCATGTGGCTTGCCCTCTACAAACCAAAACCATTCAGTCTATCTTGGTGTGCAAACTGGTTTTGTATCATTTGTGGCGTCACTCTGATGATTCTAGCTCCCATTGGTGCACTAAGGAACATCATCATCAAAGCGAAAACCTACGAGTTCTTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

430

Amino Acids

47.61

Weight (kDa)

8.74

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	28 - 414	1.6e-97	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	33 - 159	1.3e-08	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24400 AT1G67640
fragaria_vesca	FvH4_4g24381 FvH4_4g24381 FvH4_4g24390
malus_domestica	MD13G1111700.v1.1 MD16G1111300.v1.1
prunus_persica	Prupe.1G233800_v2.0.a1
pyrus_communis	pycom16g09430
rosa_chinensis	RchiOBHm_Chr4g0431231 RchiOBHm_Chr4g0431241
rosa_laevigata	RLG00000006916 RLG00000006917
rosa_multiflora	Rmu_sc0005258.1_g000008 Rmu_sc0039160.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372770 Rroxscaffold_5G00372780
rosa_rugosa	Rorug04G0249400 Rorug04G0249500 Rorug04G0249600
rosa_samantha	Rh4AG305500 Rh4BG312800 Rh4BG312900
rosa_wichuraiana	Rw4G026550 Rw4G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	259, 337
AccB7I	CCANNNNNTGG	2 cut(s)	93, 459
AciI	CCGC	5 cut(s)	102, 271, 540, 938, 1003
AclWI	GGATC	1 cut(s)	715
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	1209
AdeI	CACNNNGTG	2 cut(s)	490, 709
AfaI	GTAC	2 cut(s)	98, 606
AfiI	CCNNNNNNNGG	5 cut(s)	93, 320, 459, 761, 1067
AflIII	ACRYGT	1 cut(s)	918
AgsI	TTSAA	5 cut(s)	406, 514, 588, 741, 956
AjnI	CCWGG	4 cut(s)	181, 262, 643, 714
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
AluBI	AGCT	9 cut(s)	31, 169, 292, 319, 435, 584, 624, 896, 1229
AluI	AGCT	9 cut(s)	31, 169, 292, 319, 435, 584, 624, 896, 1229
Alw21I	GWGCWC	1 cut(s)	1243
Alw26I	GTCTC	1 cut(s)	31
Alw44I	GTGCAC	1 cut(s)	1239
AlwI	GGATC	1 cut(s)	715
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	3 cut(s)	3, 311, 1072
ApaLI	GTGCAC	1 cut(s)	1239
ApeKI	GCWGC	4 cut(s)	11, 435, 542, 581
AspS9I	GGNCC	5 cut(s)	179, 311, 450, 712, 764
AsuHPI	GGTGA	4 cut(s)	208, 397, 689, 978
AvaII	GGWCC	4 cut(s)	179, 450, 712, 764
BaeGI	GKGCMC	2 cut(s)	342, 1243
BanI	GGYRCC	2 cut(s)	259, 337
BanII	GRGCYC	1 cut(s)	327
BauI	CACGAG	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	140, 838
Bbv12I	GWGCWC	1 cut(s)	1243
BbvI	GCAGC	3 cut(s)	422, 554, 593
BccI	CCATC	2 cut(s)	74, 507
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	4 cut(s)	183, 264, 645, 716
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	4 cut(s)	78, 320, 432, 1226
BfmI	CTRYAG	2 cut(s)	619, 625
BisI	GCNGC	5 cut(s)	12, 436, 540, 543, 582
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	5 cut(s)	13, 437, 541, 544, 583
Bme1390I	CCNGG	4 cut(s)	183, 264, 645, 716
Bme18I	GGWCC	4 cut(s)	179, 450, 712, 764
BmgT120I	GGNCC	5 cut(s)	179, 311, 450, 712, 764
BmiI	GGNNCC	4 cut(s)	180, 261, 339, 766
BmrFI	CCNGG	4 cut(s)	183, 264, 645, 716
BmrI	ACTGGG	1 cut(s)	984
BmsI	GCATC	3 cut(s)	13, 237, 1140
BmuI	ACTGGG	1 cut(s)	984
BpiI	GAAGAC	2 cut(s)	140, 838
BplI	GAGNNNNNCTC	1 cut(s)	1268
BpmI	CTGGAG	2 cut(s)	737, 905
Bpu1102I	GCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	577
BsaBI	GATNNNNATC	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	1209
BsaJI	CCNNGG	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	5 cut(s)	93, 320, 459, 761, 1067
Bse1I	ACTGG	2 cut(s)	990, 1193
Bse3DI	GCAATG	1 cut(s)	939
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	4 cut(s)	183, 264, 645, 716
BseDI	CCNNGG	1 cut(s)	6
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	5 cut(s)	93, 320, 459, 761, 1067
BseMI	GCAATG	1 cut(s)	939
BseMII	CTCAG	2 cut(s)	18, 157
BseNI	ACTGG	2 cut(s)	990, 1193
BseSI	GKGCMC	2 cut(s)	342, 1243
BseXI	GCAGC	3 cut(s)	422, 554, 593
BseYI	CCCAGC	2 cut(s)	174, 292
BshFI	GGCC	3 cut(s)	5, 313, 1074
BshNI	GGYRCC	2 cut(s)	259, 337
BsiHKAI	GWGCWC	1 cut(s)	1243
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	5 cut(s)	93, 320, 459, 761, 1067
BsmAI	GTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	750
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	3 cut(s)	5, 313, 1074
Bsp1286I	GDGCHC	3 cut(s)	327, 342, 1243
Bsp143I	GATC	3 cut(s)	48, 720, 1041
Bsp1720I	GCTNAGC	1 cut(s)	27
BspACI	CCGC	5 cut(s)	102, 271, 540, 938, 1003
BspANI	GGCC	3 cut(s)	5, 313, 1074
BspCNI	CTCAG	2 cut(s)	19, 156
BspLI	GGNNCC	4 cut(s)	180, 261, 339, 766
BspPI	GGATC	1 cut(s)	715
BspT107I	GGYRCC	2 cut(s)	259, 337
BsrDI	GCAATG	1 cut(s)	939
BsrI	ACTGG	2 cut(s)	990, 1193
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	3 cut(s)	48, 720, 1041
BssNI	GRCGYC	1 cut(s)	1209
BssSI	CACGAG	1 cut(s)	287
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	4 cut(s)	183, 264, 645, 716
Bst4CI	ACNGT	1 cut(s)	652
BstACI	GRCGYC	1 cut(s)	1209
BstC8I	GCNNGC	3 cut(s)	33, 269, 1143
BstDEI	CTNAG	3 cut(s)	27, 143, 1244
BstENI	CCTNNNNNAGG	1 cut(s)	759
BstKTI	GATC	3 cut(s)	51, 723, 1044
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	3 cut(s)	48, 720, 1041
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 32, 83, 268, 581, 751
BstNI	CCWGG	4 cut(s)	183, 264, 645, 716
BstNSI	RCATGY	2 cut(s)	305, 922
BstSCI	CCNGG	4 cut(s)	181, 262, 643, 714
BstSFI	CTRYAG	2 cut(s)	619, 625
BstSLI	GKGCMC	2 cut(s)	342, 1243
BstV1I	GCAGC	3 cut(s)	422, 554, 593
BstV2I	GAAGAC	2 cut(s)	140, 838
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
BsuRI	GGCC	3 cut(s)	5, 313, 1074
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	3 cut(s)	33, 269, 1143
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr13I	GGNCC	5 cut(s)	179, 311, 450, 712, 764
CseI	GACGC	1 cut(s)	1198
Csp6I	GTAC	2 cut(s)	97, 605
CviQI	GTAC	2 cut(s)	97, 605
DdeI	CTNAG	3 cut(s)	27, 143, 1244
DpnI	GATC	3 cut(s)	50, 722, 1043
DpnII	GATC	3 cut(s)	48, 720, 1041
DraIII	CACNNNGTG	2 cut(s)	490, 709
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	4 cut(s)	179, 450, 712, 764
EcoNI	CCTNNNNNAGG	1 cut(s)	759
EcoO109I	RGGNCCY	2 cut(s)	179, 764
EcoRII	CCWGG	4 cut(s)	181, 262, 643, 714
EcoRV	GATATC	1 cut(s)	445
EcoT22I	ATGCAT	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	327
FaqI	GGGAC	1 cut(s)	750
FauNDI	CATATG	1 cut(s)	1024
Fnu4HI	GCNGC	5 cut(s)	12, 436, 540, 543, 582
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	5 cut(s)	12, 436, 540, 543, 582
FspBI	CTAG	4 cut(s)	78, 320, 432, 1226
GluI	GCNGC	5 cut(s)	12, 436, 540, 543, 582
GsaI	CCCAGC	2 cut(s)	178, 296
GsuI	CTGGAG	2 cut(s)	737, 905
HaeIII	GGCC	3 cut(s)	5, 313, 1074
HapII	CCGG	1 cut(s)	746
HgaI	GACGC	1 cut(s)	1198
Hin1I	GRCGYC	1 cut(s)	1209
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HinfI	GANTC	2 cut(s)	1083, 1222
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	4 cut(s)	208, 397, 689, 978
Hpy166II	GTNNAC	3 cut(s)	299, 616, 1241
Hpy188I	TCNGA	4 cut(s)	22, 851, 1082, 1218
Hpy188III	TCNNGA	3 cut(s)	287, 448, 460
Hpy8I	GTNNAC	3 cut(s)	299, 616, 1241
HpyAV	CCTTC	4 cut(s)	747, 765, 1085, 1133
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	1 cut(s)	455
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 32, 83, 268, 581, 751
HpyF3I	CTNAG	3 cut(s)	27, 143, 1244
HpySE526I	ACGT	1 cut(s)	455
Hsp92I	GRCGYC	1 cut(s)	1209
Kzo9I	GATC	3 cut(s)	48, 720, 1041
LmnI	GCTCC	1 cut(s)	1234
Lsp1109I	GCAGC	3 cut(s)	422, 554, 593
LweI	GCATC	3 cut(s)	13, 237, 1140
MaeI	CTAG	4 cut(s)	78, 320, 432, 1226
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	6 cut(s)	115, 385, 482, 560, 701, 1210
MalI	GATC	3 cut(s)	50, 722, 1043
MboI	GATC	3 cut(s)	48, 720, 1041
MboII	GAAGA	5 cut(s)	140, 418, 838, 1057, 1273
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	3 cut(s)	327, 342, 1243
MluCI	AATT	1 cut(s)	903
MnlI	CCTC	6 cut(s)	152, 352, 386, 643, 673, 1157
Mph1103I	ATGCAT	1 cut(s)	252
MseI	TTAA	3 cut(s)	657, 969, 1288
MslI	CAYNNNNRTG	3 cut(s)	122, 800, 1217
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	4 cut(s)	183, 264, 645, 716
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	4 cut(s)	183, 264, 645, 716
MwoI	GCNNNNNNNGC	6 cut(s)	11, 32, 83, 268, 581, 751
NdeI	CATATG	1 cut(s)	1024
NdeII	GATC	3 cut(s)	48, 720, 1041
NlaIV	GGNNCC	4 cut(s)	180, 261, 339, 766
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	5 cut(s)	115, 385, 482, 701, 1210
NsiI	ATGCAT	1 cut(s)	252
NspI	RCATGY	2 cut(s)	305, 922
PciI	ACATGT	1 cut(s)	918
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	1083, 1222
PflMI	CCANNNNNTGG	2 cut(s)	93, 459
PfoI	TCCNGGA	2 cut(s)	643, 714
PkrI	GCNGC	5 cut(s)	13, 437, 541, 544, 583
PpuMI	RGGWCCY	2 cut(s)	179, 764
PscI	ACATGT	1 cut(s)	918
Psp5II	RGGWCCY	2 cut(s)	179, 764
Psp6I	CCWGG	4 cut(s)	181, 262, 643, 714
PspFI	CCCAGC	2 cut(s)	174, 292
PspGI	CCWGG	4 cut(s)	181, 262, 643, 714
PspN4I	GGNNCC	4 cut(s)	180, 261, 339, 766
PspPI	GGNCC	5 cut(s)	179, 311, 450, 712, 764
PspPPI	RGGWCCY	2 cut(s)	179, 764
PstNI	CAGNNNCTG	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	720
RsaI	GTAC	2 cut(s)	98, 606
RsaNI	GTAC	2 cut(s)	97, 605
RseI	CAYNNNNRTG	3 cut(s)	122, 800, 1217
SaqAI	TTAA	3 cut(s)	657, 969, 1288
SatI	GCNGC	5 cut(s)	12, 436, 540, 543, 582
Sau3AI	GATC	3 cut(s)	48, 720, 1041
Sau96I	GGNCC	5 cut(s)	179, 311, 450, 712, 764
ScrFI	CCNGG	4 cut(s)	183, 264, 645, 716
SduI	GDGCHC	3 cut(s)	327, 342, 1243
SfaNI	GCATC	3 cut(s)	13, 237, 1140
SfcI	CTRYAG	2 cut(s)	619, 625
SinI	GGWCC	4 cut(s)	179, 450, 712, 764
SmiMI	CAYNNNNRTG	3 cut(s)	122, 800, 1217
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
Sse9I	AATT	1 cut(s)	903
SsiI	CCGC	5 cut(s)	102, 271, 540, 938, 1003
SspMI	CTAG	4 cut(s)	78, 320, 432, 1226
StyD4I	CCNGG	4 cut(s)	181, 262, 643, 714
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	2 cut(s)	276, 1015
TasI	AATT	1 cut(s)	903
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	2 cut(s)	1083, 1222
Tru1I	TTAA	3 cut(s)	657, 969, 1288
Tru9I	TTAA	3 cut(s)	657, 969, 1288
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	5 cut(s)	115, 385, 482, 701, 1210
TseI	GCWGC	4 cut(s)	11, 435, 542, 581
Tsp45I	GTSAC	5 cut(s)	115, 385, 482, 701, 1210
TspDTI	ATGAA	2 cut(s)	267, 992
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	2 cut(s)	93, 459
VneI	GTGCAC	1 cut(s)	1239
VpaK11BI	GGWCC	4 cut(s)	179, 450, 712, 764
XagI	CCTNNNNNAGG	1 cut(s)	759
XceI	RCATGY	2 cut(s)	305, 922
XspI	CTAG	4 cut(s)	78, 320, 432, 1226
Zsp2I	ATGCAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.