Rorug04G0249400

Lysine histidine transporter

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
42168620 .. 42169174
555 bp
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UTR
Exon/CDS
Intron
Rorug04G0249400.1

Sequence Viewer

Length: 555 bp
ATGGGTTTCTACCTTGTGCTTGGGCTCTGGCTAATTGTAAGATTATTCATGAAGCTAGGTGTCAGAATTAATTGTGGACATAGGGAGGAGTCAATTATCTATTGTTTATGGGAATGCAATGAGGCCAGAGAGGTACAAAAGCTTACTTTTCTAACAGATGTGTGCAAGGGATGGAAGGAAAGGAGTTTTTCAGATTTGTTTTGTCATGTTGCTTCTGTGGTCAAAGAAGAAGAATTGGAATGGTTTGGAGTGGTGGCGTGGAATTTGTGGCATAATAGAAACAAAAAGGTACATGGTCAGAGGGGGATGCAAGCTGTTGAAATATTGGATAAAGCTACTCCTTGGTTGGAATTTTATAAGGCAGGAACAAGGACAAGTGGAAACAAATTGGAAGCTGGAGTTGGGTTGGAATATACAGGTGACAATCAACGCTGGGTTGCTCCACCTGCTGGGTATTGGAAGTTGAATTTCGACGCGGCAATTGACGCTTTGAATGGTTGCTTCGGGACGGGGCGGTGTGTAGGAATGAGATTGAGGAGTGTGTTGGTGTGTTAG

Protein Analysis

184

Amino Acids

21.08

Weight (kDa)

8.41

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AarI CACCTGC 1 cut(s) 454
Acc36I ACCTGC 1 cut(s) 454
AccB7I CCANNNNNTGG 1 cut(s) 449
AccII CGCG 1 cut(s) 476
AciI CCGC 2 cut(s) 476, 514
AcsI RAATTY 3 cut(s) 262, 350, 466
AfaI GTAC 2 cut(s) 135, 291
AfiI CCNNNNNNNGG 1 cut(s) 449
AgsI TTSAA 3 cut(s) 320, 466, 493
AjuI GAANNNNNNNTTGG 2 cut(s) 384, 416
AluBI AGCT 5 cut(s) 55, 142, 314, 335, 395
AluI AGCT 5 cut(s) 55, 142, 314, 335, 395
AoxI GGCC 1 cut(s) 123
ApoI RAATTY 3 cut(s) 262, 350, 466
AseI ATTAAT 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 431
BanII GRGCYC 1 cut(s) 27
BccI CCATC 1 cut(s) 165
BfaI CTAG 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 454
BisI GCNGC 1 cut(s) 477
BlsI GCNGC 1 cut(s) 478
BmsI GCATC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 341
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse3DI GCAATG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 341
BseGI GGATG 2 cut(s) 176, 312
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMI GCAATG 1 cut(s) 124
BseRI GAGGAG 2 cut(s) 101, 550
BseYI CCCAGC 2 cut(s) 432, 449
Bsh1236I CGCG 1 cut(s) 476
BshFI GGCC 1 cut(s) 125
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 1 cut(s) 449
BsmFI GGGAC 1 cut(s) 520
BsmI GAATGC 1 cut(s) 119
BsnI GGCC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 27
BspACI CCGC 2 cut(s) 476, 514
BspANI GGCC 1 cut(s) 125
BspFNI CGCG 1 cut(s) 476
BspHI TCATGA 1 cut(s) 48
BspMI ACCTGC 1 cut(s) 454
BsrDI GCAATG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 341
BssT1I CCWWGG 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 312
BstF5I GGATG 2 cut(s) 176, 312
BstFNI CGCG 1 cut(s) 476
BstMWI GCNNNNNNNGC 2 cut(s) 446, 485
BstUI CGCG 1 cut(s) 476
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 2 cut(s) 176, 312
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 312
CciI TCATGA 1 cut(s) 48
CseI GACGC 2 cut(s) 482, 494
Csp6I GTAC 2 cut(s) 134, 290
CviAII CATG 3 cut(s) 49, 206, 293
CviJI RGCY 8 cut(s) 25, 31, 55, 125, 142, 314, 335, 395
CviKI_1 RGCY 8 cut(s) 25, 31, 55, 125, 142, 314, 335, 395
CviQI GTAC 2 cut(s) 134, 290
Eco130I CCWWGG 1 cut(s) 341
Eco24I GRGCYC 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 341
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 341
FaeI CATG 3 cut(s) 52, 209, 296
FaiI YATR 8 cut(s) 50, 81, 109, 207, 273, 294, 357, 414
FaqI GGGAC 1 cut(s) 520
FatI CATG 3 cut(s) 48, 205, 292
Fnu4HI GCNGC 1 cut(s) 477
FokI GGATG 2 cut(s) 183, 319
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 477
FspBI CTAG 1 cut(s) 56
GluI GCNGC 1 cut(s) 477
GsaI CCCAGC 2 cut(s) 436, 453
GsuI CTGGAG 1 cut(s) 417
HaeIII GGCC 1 cut(s) 125
HgaI GACGC 2 cut(s) 482, 494
Hin1II CATG 3 cut(s) 52, 209, 296
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 89
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 3 cut(s) 65, 193, 300
Hpy188III TCNNGA 2 cut(s) 49, 505
Hpy8I GTNNAC 1 cut(s) 77
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 117, 165, 310
HpyF10VI GCNNNNNNNGC 2 cut(s) 446, 485
Hsp92II CATG 3 cut(s) 52, 209, 296
LmnI GCTCC 1 cut(s) 445
LpnPI CCDG 8 cut(s) 13, 139, 348, 381, 402, 418, 435, 459
LweI GCATC 1 cut(s) 297
MaeI CTAG 1 cut(s) 56
MaeIII GTNAC 1 cut(s) 419
MboII GAAGA 2 cut(s) 239, 242
MfeI CAATTG 1 cut(s) 480
MhlI GDGCHC 1 cut(s) 27
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 2 cut(s) 327, 387
MnlI CCTC 5 cut(s) 79, 115, 124, 294, 528
MseI TTAA 1 cut(s) 69
MunI CAATTG 1 cut(s) 480
Mva1269I GAATGC 1 cut(s) 119
MvnI CGCG 1 cut(s) 476
MwoI GCNNNNNNNGC 2 cut(s) 446, 485
NlaIII CATG 3 cut(s) 52, 209, 296
NmuCI GTSAC 1 cut(s) 419
PagI TCATGA 1 cut(s) 48
PaqCI CACCTGC 1 cut(s) 454
PctI GAATGC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 1 cut(s) 478
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PshBI ATTAAT 1 cut(s) 69
PsiI TTATAA 1 cut(s) 357
PspFI CCCAGC 2 cut(s) 432, 449
RsaI GTAC 2 cut(s) 135, 291
RsaNI GTAC 2 cut(s) 134, 290
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 1 cut(s) 477
SchI GAGTC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 27
SfaNI GCATC 1 cut(s) 297
SsiI CCGC 2 cut(s) 476, 514
SspI AATATT 1 cut(s) 324
SspMI CTAG 1 cut(s) 56
StyI CCWWGG 1 cut(s) 341
TaqI TCGA 1 cut(s) 471
TauI GCSGC 1 cut(s) 479
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TseFI GTSAC 1 cut(s) 419
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 2 cut(s) 37, 65
Van91I CCANNNNNTGG 1 cut(s) 449
VspI ATTAAT 1 cut(s) 69
XapI RAATTY 3 cut(s) 262, 350, 466
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.