Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006982

Physical Location & Seq

Genomic Coordinates Reverse (-)

24807289 .. 24809704

Gene Structure 2416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G233800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGTTCAAGCAAGGGATGTTGAAGATGCCGCAGCCAGGCAGAAGCAGATTGATGATTGGCTTCCCATCACTTCTGCTAGGAATGCCAAATGGTGGTACTCTGCTTTCCACAATGTCACTGCCATGGTGGGGGCTGGTGTCCTCAGCCTTCCTTATGCCATGTCAGAACTTGGATGGGGTCCTGGTGTGGCTATTATGATTCTGTCATGGATCATCACCCTATACACACTGTGGCAAATGGTTGAGATGCATGAAATGGTGCCCGGGAAGCGGTTTGACAGGTACCATGAGCTGGGGCAGCATGCCTTTGGAGAGAAGCTGGGTCTGTGGATTGTGGTACCCCAACAGCTAGTTGTGGAAGTTGGTGTCAACATAGTGTATATGGTCACAGGAGGAAAATCATTGGAGAAGTTCCATGATGTGATTTGTCCAAGTTGCAAAACAATCAGGACCTCCTACTGGATTATGATTTTTGCTTCTTCCCACTTTGTTCTCTCCCATCTCCCCAACTTCAACGCCATCTCTGGTATCTCACTGGCTGCAGCAGTCATGTCCTTGAGTTACTCAACAATTGCATGGGGAGCTGCTTTACACAAGGGGGTTGAACCAAACGTGGACTACAGCTACAAAGCTAAAACCAATTCTGGAGCTGTCTTTAACTTCTTCAGTGGATTGGGAGACGTAGCATTTGCCTACGCTGGTCACAATGTGGTTTTGGAGATCCAAGCAACCATTCCCTCTACACCGGAGAAGCCTTCCAAGGGTCCCATGTGGAAAGGAGTGATTGTGGCATACATTGTGGTGGCTTTGTGCTACTTCCCTGTTTCTTTTGTTGGCTACTGGGTTTACGGAAACAAAATTGAAGACAACATCCTCATCTCATTAGATAAACCCGTTTGGCTAATTGCAACTGCTAACATGTTTGTTGTGGTCCATGTCATTGGAAGCTACCAAGTGTTTGCAATGGGAGTGTTTGACATGGTTGAAACTTTTCTGGTCAAGAAGATGAACTTCACGCCTTCTTTCGCCCTTCGATTTGTTACTCGCACTACATACGTCGCATTTACCATGATCGTTGGTATAGCCATCCCTTTCTTCAGTGGCCTTCTGGGATTCTTTGGGGGATTTGCTTTCGCCCCAACCACATATTTCCTTCCCTGCATCATGTGGCTTTCCATCTACAAACCGAAACGATTCAGTCTATCTTGGTGCATGAACTGGCTATGCATTTTACTTGGTCTTACGTTGATGATTTTAGCACCCATTGGAGCCCTAAGGAATATCATTCTGCAAGCAAAAACCTACAAATTCTTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

440

Amino Acids

49.03

Weight (kDa)

8.94

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24400 AT1G67640
fragaria_vesca	FvH4_4g24381 FvH4_4g24381 FvH4_4g24390
malus_domestica	MD13G1111700.v1.1 MD16G1111300.v1.1
prunus_persica	Prupe.1G233800_v2.0.a1
pyrus_communis	pycom16g09430
rosa_chinensis	RchiOBHm_Chr4g0431231 RchiOBHm_Chr4g0431241
rosa_laevigata	RLG00000006916 RLG00000006917
rosa_multiflora	Rmu_sc0005258.1_g000008 Rmu_sc0039160.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372770 Rroxscaffold_5G00372780
rosa_rugosa	Rorug04G0249400 Rorug04G0249500 Rorug04G0249600
rosa_samantha	Rh4AG305500 Rh4BG312800 Rh4BG312900
rosa_wichuraiana	Rw4G026550 Rw4G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	282, 337
AccB1I	GGYRCC	3 cut(s)	259, 282, 337
AccB7I	CCANNNNNTGG	2 cut(s)	93, 292
AciI	CCGC	2 cut(s)	30, 271
AclWI	GGATC	2 cut(s)	218, 715
AcsI	RAATTY	1 cut(s)	1307
AcuI	CTGAAG	2 cut(s)	649, 1081
AdeI	CACNNNGTG	2 cut(s)	231, 709
AfaI	GTAC	3 cut(s)	98, 284, 339
AfiI	CCNNNNNNNGG	7 cut(s)	36, 93, 129, 270, 292, 459, 761
AflIII	ACRYGT	1 cut(s)	918
AgsI	TTSAA	6 cut(s)	8, 23, 514, 605, 863, 986
AjnI	CCWGG	2 cut(s)	35, 181
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
AluBI	AGCT	8 cut(s)	292, 319, 349, 584, 624, 632, 650, 948
AluI	AGCT	8 cut(s)	292, 319, 349, 584, 624, 632, 650, 948
Alw26I	GTCTC	1 cut(s)	672
AlwI	GGATC	2 cut(s)	218, 715
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	1 cut(s)	1102
ApeKI	GCWGC	5 cut(s)	32, 298, 539, 542, 584
ApoI	RAATTY	1 cut(s)	1307
ArsI	GACNNNNNNTTYG	2 cut(s)	671, 703
Asp700I	GAANNNNTTC	2 cut(s)	990, 1193
Asp718I	GGTACC	2 cut(s)	282, 337
AspS9I	GGNCC	4 cut(s)	179, 450, 764, 931
AsuC2I	CCSGG	2 cut(s)	264, 265
AsuHPI	GGTGA	1 cut(s)	208
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	4 cut(s)	179, 450, 764, 931
AxyI	CCTNAGG	1 cut(s)	1274
BaeGI	GKGCMC	1 cut(s)	264
BanI	GGYRCC	3 cut(s)	259, 282, 337
BanII	GRGCYC	1 cut(s)	1273
BbsI	GAAGAC	1 cut(s)	870
BbvCI	CCTCAGC	1 cut(s)	143
BbvI	GCAGC	5 cut(s)	44, 310, 526, 554, 571
BccI	CCATC	6 cut(s)	74, 168, 507, 527, 1094, 1184
BciT130I	CCWGG	2 cut(s)	37, 183
BcnI	CCSGG	2 cut(s)	264, 265
BcoDI	GTCTC	1 cut(s)	672
BfaI	CTAG	2 cut(s)	78, 350
BfmI	CTRYAG	2 cut(s)	540, 619
BisI	GCNGC	6 cut(s)	30, 33, 299, 540, 543, 585
BlsI	GCNGC	6 cut(s)	31, 34, 300, 541, 544, 586
Bme1390I	CCNGG	4 cut(s)	37, 183, 264, 265
Bme18I	GGWCC	4 cut(s)	179, 450, 764, 931
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	4 cut(s)	179, 450, 764, 931
BmiI	GGNNCC	7 cut(s)	180, 261, 284, 339, 765, 766, 1270
BmrFI	CCNGG	4 cut(s)	37, 183, 264, 265
BmrI	ACTGGG	1 cut(s)	850
BmsI	GCATC	3 cut(s)	16, 237, 1170
BmuI	ACTGGG	1 cut(s)	850
BpiI	GAAGAC	1 cut(s)	870
BpmI	CTGGAG	1 cut(s)	666
Bpu10I	CCTNAGC	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	577
BpuMI	CCSGG	2 cut(s)	264, 265
BsaJI	CCNNGG	3 cut(s)	123, 263, 759
BsaWI	WCCGGW	1 cut(s)	745
BsaXI	ACNNNNNCTCC	2 cut(s)	771, 801
Bsc4I	CCNNNNNNNGG	7 cut(s)	36, 93, 129, 270, 292, 459, 761
Bse1I	ACTGG	4 cut(s)	464, 540, 845, 1223
Bse21I	CCTNAGG	1 cut(s)	1274
Bse3DI	GCAATG	1 cut(s)	969
BseBI	CCWGG	2 cut(s)	37, 183
BseDI	CCNNGG	3 cut(s)	123, 263, 759
BseGI	GGATG	4 cut(s)	22, 179, 870, 1086
BseLI	CCNNNNNNNGG	7 cut(s)	36, 93, 129, 270, 292, 459, 761
BseMI	GCAATG	1 cut(s)	969
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	4 cut(s)	464, 540, 845, 1223
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	5 cut(s)	44, 310, 526, 554, 571
BseYI	CCCAGC	2 cut(s)	292, 319
BshFI	GGCC	1 cut(s)	1104
BshNI	GGYRCC	3 cut(s)	259, 282, 337
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	264, 746
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	7 cut(s)	36, 93, 129, 270, 292, 459, 761
BsmAI	GTCTC	1 cut(s)	672
BsmBI	CGTCTC	1 cut(s)	672
BsmFI	GGGAC	1 cut(s)	750
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	1104
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	264, 1273
Bsp143I	GATC	3 cut(s)	210, 720, 1071
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	2 cut(s)	30, 271
BspANI	GGCC	1 cut(s)	1104
BspCNI	CTCAG	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	1316
BspLI	GGNNCC	7 cut(s)	180, 261, 284, 339, 765, 766, 1270
BspMAI	CTGCAG	1 cut(s)	544
BspPI	GGATC	2 cut(s)	218, 715
BspT107I	GGYRCC	3 cut(s)	259, 282, 337
BsrDI	GCAATG	1 cut(s)	969
BsrI	ACTGG	4 cut(s)	464, 540, 845, 1223
BssECI	CCNNGG	3 cut(s)	123, 263, 759
BssMI	GATC	3 cut(s)	210, 720, 1071
BssT1I	CCWWGG	2 cut(s)	123, 759
Bst2UI	CCWGG	2 cut(s)	37, 183
Bst4CI	ACNGT	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	303, 1293
BstDEI	CTNAG	2 cut(s)	143, 1274
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	4 cut(s)	22, 179, 870, 1086
BstKTI	GATC	3 cut(s)	213, 723, 1074
BstMAI	GTCTC	1 cut(s)	672
BstMBI	GATC	3 cut(s)	210, 720, 1071
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 268, 298, 581
BstNI	CCWGG	2 cut(s)	37, 183
BstNSI	RCATGY	2 cut(s)	305, 922
BstSCI	CCNGG	4 cut(s)	35, 181, 262, 263
BstSFI	CTRYAG	2 cut(s)	540, 619
BstSLI	GKGCMC	1 cut(s)	264
BstV1I	GCAGC	5 cut(s)	44, 310, 526, 554, 571
BstV2I	GAAGAC	1 cut(s)	870
BstX2I	RGATCY	1 cut(s)	720
BstXI	CCANNNNNNTGG	1 cut(s)	941
BstYI	RGATCY	1 cut(s)	720
Bsu36I	CCTNAGG	1 cut(s)	1274
BsuRI	GGCC	1 cut(s)	1104
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	4 cut(s)	22, 179, 870, 1086
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	5 cut(s)	117, 227, 533, 673, 1105
Cac8I	GCNNGC	2 cut(s)	303, 1293
CciI	TCATGA	1 cut(s)	1316
Cfr13I	GGNCC	4 cut(s)	179, 450, 764, 931
Cfr9I	CCCGGG	1 cut(s)	263
Csp6I	GTAC	3 cut(s)	97, 283, 338
CviQI	GTAC	3 cut(s)	97, 283, 338
DdeI	CTNAG	2 cut(s)	143, 1274
DpnI	GATC	3 cut(s)	212, 722, 1073
DpnII	GATC	3 cut(s)	210, 720, 1071
DraIII	CACNNNGTG	2 cut(s)	231, 709
Eco130I	CCWWGG	2 cut(s)	123, 759
Eco24I	GRGCYC	1 cut(s)	1273
Eco47I	GGWCC	4 cut(s)	179, 450, 764, 931
Eco57I	CTGAAG	2 cut(s)	649, 1081
Eco81I	CCTNAGG	1 cut(s)	1274
Eco88I	CYCGRG	1 cut(s)	263
EcoO109I	RGGNCCY	3 cut(s)	179, 450, 764
EcoRII	CCWGG	2 cut(s)	35, 181
EcoT14I	CCWWGG	2 cut(s)	123, 759
EcoT22I	ATGCAT	2 cut(s)	252, 1229
EcoT38I	GRGCYC	1 cut(s)	1273
ErhI	CCWWGG	2 cut(s)	123, 759
Esp3I	CGTCTC	1 cut(s)	672
FalI	AAGNNNNNCTT	2 cut(s)	995, 1027
FaqI	GGGAC	1 cut(s)	750
Fnu4HI	GCNGC	6 cut(s)	30, 33, 299, 540, 543, 585
FokI	GGATG	4 cut(s)	29, 186, 857, 1073
FriOI	GRGCYC	1 cut(s)	1273
Fsp4HI	GCNGC	6 cut(s)	30, 33, 299, 540, 543, 585
FspBI	CTAG	2 cut(s)	78, 350
GluI	GCNGC	6 cut(s)	30, 33, 299, 540, 543, 585
GsaI	CCCAGC	2 cut(s)	296, 323
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	1 cut(s)	1104
HapII	CCGG	2 cut(s)	264, 746
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	3 cut(s)	199, 1113, 1194
HpaII	CCGG	2 cut(s)	264, 746
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	3 cut(s)	370, 616, 847
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	4 cut(s)	448, 645, 1000, 1317
Hpy8I	GTNNAC	3 cut(s)	370, 616, 847
Hpy99I	CGWCG	1 cut(s)	1061
HpyAV	CCTTC	6 cut(s)	158, 765, 1029, 1040, 1115, 1163
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4IV	ACGT	4 cut(s)	612, 681, 1056, 1244
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 268, 298, 581
HpyF3I	CTNAG	2 cut(s)	143, 1274
HpySE526I	ACGT	4 cut(s)	612, 681, 1056, 1244
KflI	GGGWCCC	1 cut(s)	764
KpnI	GGTACC	2 cut(s)	286, 341
Kzo9I	GATC	3 cut(s)	210, 720, 1071
LmnI	GCTCC	3 cut(s)	581, 647, 1268
Lsp1109I	GCAGC	5 cut(s)	44, 310, 526, 554, 571
LweI	GCATC	3 cut(s)	16, 237, 1170
MaeI	CTAG	2 cut(s)	78, 350
MaeII	ACGT	4 cut(s)	612, 681, 1056, 1244
MaeIII	GTNAC	5 cut(s)	115, 385, 560, 701, 1039
MalI	GATC	3 cut(s)	212, 722, 1073
MboI	GATC	3 cut(s)	210, 720, 1071
MboII	GAAGA	7 cut(s)	35, 471, 655, 875, 1015, 1087, 1303
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	2 cut(s)	264, 1273
MluCI	AATT	5 cut(s)	570, 640, 858, 903, 1307
MnlI	CCTC	5 cut(s)	152, 386, 463, 748, 884
Mph1103I	ATGCAT	2 cut(s)	252, 1229
MroXI	GAANNNNTTC	2 cut(s)	990, 1193
MseI	TTAA	1 cut(s)	657
MslI	CAYNNNNRTG	2 cut(s)	122, 800
MspI	CCGG	2 cut(s)	264, 746
MspR9I	CCNGG	4 cut(s)	37, 183, 264, 265
MunI	CAATTG	1 cut(s)	570
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	2 cut(s)	37, 183
MwoI	GCNNNNNNNGC	4 cut(s)	83, 268, 298, 581
NciI	CCSGG	2 cut(s)	264, 265
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	3 cut(s)	210, 720, 1071
NlaIV	GGNNCC	7 cut(s)	180, 261, 284, 339, 765, 766, 1270
NmuCI	GTSAC	3 cut(s)	115, 385, 701
NsiI	ATGCAT	2 cut(s)	252, 1229
NspI	RCATGY	2 cut(s)	305, 922
PaeI	GCATGC	1 cut(s)	305
PagI	TCATGA	1 cut(s)	1316
PciI	ACATGT	1 cut(s)	918
PctI	GAATGC	1 cut(s)	88
PdmI	GAANNNNTTC	2 cut(s)	990, 1193
PfeI	GAWTC	3 cut(s)	199, 1113, 1194
PflMI	CCANNNNNTGG	2 cut(s)	93, 292
PkrI	GCNGC	6 cut(s)	31, 34, 300, 541, 544, 586
PpuMI	RGGWCCY	3 cut(s)	179, 450, 764
PscI	ACATGT	1 cut(s)	918
Psp5II	RGGWCCY	3 cut(s)	179, 450, 764
Psp6I	CCWGG	2 cut(s)	35, 181
PspFI	CCCAGC	2 cut(s)	292, 319
PspGI	CCWGG	2 cut(s)	35, 181
PspN4I	GGNNCC	7 cut(s)	180, 261, 284, 339, 765, 766, 1270
PspPI	GGNCC	4 cut(s)	179, 450, 764, 931
PspPPI	RGGWCCY	3 cut(s)	179, 450, 764
PstI	CTGCAG	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	720
RsaI	GTAC	3 cut(s)	98, 284, 339
RsaNI	GTAC	3 cut(s)	97, 283, 338
RseI	CAYNNNNRTG	2 cut(s)	122, 800
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	6 cut(s)	30, 33, 299, 540, 543, 585
Sau3AI	GATC	3 cut(s)	210, 720, 1071
Sau96I	GGNCC	4 cut(s)	179, 450, 764, 931
ScrFI	CCNGG	4 cut(s)	37, 183, 264, 265
SduI	GDGCHC	2 cut(s)	264, 1273
SfaNI	GCATC	3 cut(s)	16, 237, 1170
SfcI	CTRYAG	2 cut(s)	540, 619
SinI	GGWCC	4 cut(s)	179, 450, 764, 931
SmaI	CCCGGG	1 cut(s)	265
SmiMI	CAYNNNNRTG	2 cut(s)	122, 800
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
SphI	GCATGC	1 cut(s)	305
Sse9I	AATT	5 cut(s)	570, 640, 858, 903, 1307
SsiI	CCGC	2 cut(s)	30, 271
SspMI	CTAG	2 cut(s)	78, 350
StyD4I	CCNGG	4 cut(s)	35, 181, 262, 263
StyI	CCWWGG	2 cut(s)	123, 759
TaaI	ACNGT	1 cut(s)	231
TaiI	ACGT	4 cut(s)	615, 684, 1059, 1247
TaqI	TCGA	1 cut(s)	1033
TasI	AATT	5 cut(s)	570, 640, 858, 903, 1307
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	3 cut(s)	199, 1113, 1194
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	5 cut(s)	124, 234, 540, 673, 1105
TseFI	GTSAC	3 cut(s)	115, 385, 701
TseI	GCWGC	5 cut(s)	32, 298, 539, 542, 584
Tsp45I	GTSAC	3 cut(s)	115, 385, 701
TspDTI	ATGAA	3 cut(s)	267, 1022, 1229
TspGWI	ACGGA	1 cut(s)	864
TspMI	CCCGGG	1 cut(s)	263
TspRI	CASTG	5 cut(s)	124, 234, 540, 673, 1105
Van91I	CCANNNNNTGG	2 cut(s)	93, 292
VpaK11BI	GGWCC	4 cut(s)	179, 450, 764, 931
XapI	RAATTY	1 cut(s)	1307
XceI	RCATGY	2 cut(s)	305, 922
XmaI	CCCGGG	1 cut(s)	263
XmnI	GAANNNNTTC	2 cut(s)	990, 1193
XspI	CTAG	2 cut(s)	78, 350
Zsp2I	ATGCAT	2 cut(s)	252, 1229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.