Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004080

Physical Location & Seq

Genomic Coordinates Reverse (-)

25598331 .. 25599350

Gene Structure 1020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCGGAAGAAGAGAAAAGCGTGATGAAGCAAGTGATGGTGGCGATTGATGAAAGCGAATGTAGTAAACGCGCTCTTCAATGGACGCTCGTGTATCTCAAAGATAGCCTCGCCGATTCCGACATCATCCTCTTCACTGCTCAACCTCATCTTGATCTCAGCTGCGTCTATGCTTCCTCTTATGGCGCCGCTCCGATTGAGCTTATAAACTCATTGCAAGAGAGTCATAAGAACGCTGGATTGAATCGTCTTGATGAAGGAACCAAAATTTGTGCTGAGACTGGGGTTACTCCAAGAAAGGTGTTGGAATTTGGAAATCCTAAAGAAGCGATATGTGAAGCTGCTGAGAAGCTTGGTGTTGATATGCTTGTGGTTGGAAGCCATGGTAAAGGAGCATTACAAAGGACTTTCCTTGGAAGTGTTAGCAATTACTGTGTTAACAATGCTAAGTGCCCAGTTCTTGTGGTGAGAACAAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

160

Amino Acids

17.33

Weight (kDa)

5.64

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	9 - 157	5.5e-34	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68300
fragaria_vesca	FvH4_4g27170 FvH4_4g27170 FvH4_4g27180
malus_domestica	MD13G1040100.v1.1 MD13G1040200.v1.1 MD16G1041100.v1.1
prunus_persica	Prupe.1G312900_v2.0.a1 Prupe.1G313000_v2.0.a1
pyrus_communis	pycom13g03450 pycom13g03460
rosa_chinensis	RchiOBHm_Chr4g0434961 RchiOBHm_Chr4g0434971
rosa_laevigata	RLG00000006632 RLG00000006633
rosa_multiflora	Rmu_sc0000400.1_g000036 Rmu_sc0023421.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376140 Rroxscaffold_5G00376150
rosa_rugosa	Rorug04G0281300 Rorug04G0281400 Rorug04G0281500 Rorug04G0281500
rosa_samantha	Rh4AG336700 Rh4AG336800 Rh4BG344600 Rh4BG344700 Rh4CG359300 Rh4CG359500 Rh4DG339100 Rh4DG339200
rosa_wichuraiana	Rw4G029350 Rw4G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	185
AccBSI	CCGCTC	1 cut(s)	191
AccII	CGCG	1 cut(s)	72
AciI	CCGC	2 cut(s)	5, 189
AcsI	RAATTY	2 cut(s)	267, 308
AcyI	GRCGYC	1 cut(s)	186
AgsI	TTSAA	2 cut(s)	80, 244
AluBI	AGCT	5 cut(s)	162, 202, 341, 352, 479
AluI	AGCT	5 cut(s)	162, 202, 341, 352, 479
Alw26I	GTCTC	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	162, 341
ApoI	RAATTY	2 cut(s)	267, 308
AspLEI	GCGC	2 cut(s)	74, 188
AsuHPI	GGTGA	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	185
BauI	CACGAG	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	149, 328
BccI	CCATC	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	272
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	3 cut(s)	163, 189, 342
BlsI	GCNGC	3 cut(s)	164, 190, 343
BmiI	GGNNCC	2 cut(s)	187, 262
BmrI	ACTGGG	2 cut(s)	291, 449
BmuI	ACTGGG	2 cut(s)	291, 449
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	382, 412
Bse1I	ACTGG	2 cut(s)	286, 455
Bse3DI	GCAATG	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	382, 412
BseGI	GGATG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	3 cut(s)	172, 267, 336
BseNI	ACTGG	2 cut(s)	286, 455
BseSI	GKGCMC	1 cut(s)	455
BseXI	GCAGC	2 cut(s)	149, 328
Bsh1236I	CGCG	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	455
Bsp143I	GATC	1 cut(s)	154
Bsp19I	CCATGG	1 cut(s)	382
BspACI	CCGC	2 cut(s)	5, 189
BspCNI	CTCAG	3 cut(s)	171, 268, 337
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	187, 262
BspQI	GCTCTTC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	212
BsrI	ACTGG	2 cut(s)	286, 455
BssECI	CCNNGG	2 cut(s)	382, 412
BssMI	GATC	1 cut(s)	154
BssNI	GRCGYC	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	89
BssT1I	CCWWGG	2 cut(s)	382, 412
Bst2BI	CACGAG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	3 cut(s)	6, 81, 137
BstACI	GRCGYC	1 cut(s)	186
BstDEI	CTNAG	4 cut(s)	158, 276, 345, 447
BstDSI	CCRYGG	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	72
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	74, 188
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	455
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	149, 328
BtgI	CCRYGG	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
CfoI	GCGC	2 cut(s)	74, 188
CseI	GACGC	2 cut(s)	94, 154
CviAII	CATG	1 cut(s)	383
CviJI	RGCY	7 cut(s)	108, 162, 202, 341, 352, 381, 479
CviKI_1	RGCY	7 cut(s)	108, 162, 202, 341, 352, 381, 479
DdeI	CTNAG	4 cut(s)	158, 276, 345, 447
DinI	GGCGCC	1 cut(s)	187
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eam1104I	CTCTTC	3 cut(s)	6, 81, 137
EarI	CTCTTC	3 cut(s)	6, 81, 137
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	382, 412
EcoT14I	CCWWGG	2 cut(s)	382, 412
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
ErhI	CCWWGG	2 cut(s)	382, 412
FaeI	CATG	1 cut(s)	386
FaiI	YATR	7 cut(s)	171, 183, 206, 228, 334, 365, 384
FatI	CATG	1 cut(s)	382
Fnu4HI	GCNGC	3 cut(s)	163, 189, 342
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	3 cut(s)	163, 189, 342
GlaI	GCGC	2 cut(s)	73, 187
GluI	GCNGC	3 cut(s)	163, 189, 342
HaeII	RGCGCY	1 cut(s)	189
HgaI	GACGC	2 cut(s)	94, 154
HhaI	GCGC	2 cut(s)	74, 188
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	386
Hin6I	GCGC	2 cut(s)	72, 186
HinP1I	GCGC	2 cut(s)	72, 186
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	2 cut(s)	350, 477
HinfI	GANTC	3 cut(s)	116, 223, 244
HpaI	GTTAAC	1 cut(s)	439
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	2 cut(s)	68, 439
Hpy188I	TCNGA	2 cut(s)	121, 195
Hpy188III	TCNNGA	2 cut(s)	152, 251
Hpy8I	GTNNAC	2 cut(s)	68, 439
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	1 cut(s)	217
HpyF3I	CTNAG	4 cut(s)	158, 276, 345, 447
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	386
HspAI	GCGC	2 cut(s)	72, 186
KasI	GGCGCC	1 cut(s)	185
KspAI	GTTAAC	1 cut(s)	439
Kzo9I	GATC	1 cut(s)	154
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	2 cut(s)	196, 392
LpnPI	CCDG	3 cut(s)	222, 267, 468
Lsp1109I	GCAGC	2 cut(s)	149, 328
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	156
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	1 cut(s)	154
MboII	GAAGA	4 cut(s)	20, 23, 68, 124
MhlI	GDGCHC	1 cut(s)	455
MluCI	AATT	3 cut(s)	267, 308, 427
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	3 cut(s)	144, 285, 355
MnlI	CCTC	4 cut(s)	119, 140, 156, 187
MseI	TTAA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	72
NarI	GGCGCC	1 cut(s)	186
NcoI	CCATGG	1 cut(s)	382
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	386
NlaIV	GGNNCC	2 cut(s)	187, 262
PciSI	GCTCTTC	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	116, 244
PkrI	GCNGC	3 cut(s)	164, 190, 343
PleI	GAGTC	1 cut(s)	231
PluTI	GGCGCC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	231
PsiI	TTATAA	1 cut(s)	206
PspN4I	GGNNCC	2 cut(s)	187, 262
PvuII	CAGCTG	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	3 cut(s)	163, 189, 342
Sau3AI	GATC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	455
SetI	ASST	7 cut(s)	148, 164, 204, 303, 343, 354, 481
SfoI	GGCGCC	1 cut(s)	187
Sse9I	AATT	3 cut(s)	267, 308, 427
SsiI	CCGC	2 cut(s)	5, 189
SspDI	GGCGCC	1 cut(s)	185
StyI	CCWWGG	2 cut(s)	382, 412
TaaI	ACNGT	1 cut(s)	434
TasI	AATT	3 cut(s)	267, 308, 427
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	116, 244
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	2 cut(s)	162, 341
TspDTI	ATGAA	3 cut(s)	41, 66, 270
TspRI	CASTG	1 cut(s)	142
XapI	RAATTY	2 cut(s)	267, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.