Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004080

Physical Location & Seq

Genomic Coordinates Forward (+)

2283498 .. 2286080

Gene Structure 2583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03450.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTTCCGGTTCCAGGGCCTGCGGGCATTTTCAATTGCTGACCCCACCCACGTGACCCTCCCCTCCTACTCGCGTGTCATCCAGACGTCACTCCACCTCCGCCATCAGTCAGTTTCCTTCCCGACGAAGTGGCCACGTCTCCGATCACTCCCCACCGTCAGGAGCTGCACTGCTCTCGCATTCGATTTCAAAGGTCTCGAAGGTTGCCTGCATTGGCGAGGCACTAGCATTGTCCGATTTGTGGCTCACATTCCCCGCACCTCTCACAGTATGCTTCAGCAATTACACAAATGTGATTTGCCTTGCCTGCAAAGAAAGAGAGTGAAAGACACAGAAAGAGAGAGGATGGAGGAGCAGGGAAAGCATGAGGAGAAGAAGAAGGTGATGGTGGCGATCGACGAAAGCGAGTTTAGCCTATACGCCTTCAATTGGGCGCTCGAAAATCTGCGCGACACCATCCAGAGTTCGCAGCTAGTCGTCTTCACCGCACAGCCCATTGACTTCGCTTCCACTTATGCTGCCAGTTACGGAGCTGCCCCTGCTGAGTTGGTAACATCTTTGCTTGAAAACCACAAGAAGGTGGCGCTAGCTTTGTTGGAGAGAGCTAAAGAAATTTGTGCCAAACATGGGATTGTTGCAGAGACAGTGACAGAGGTAGGCGATCCGAAGGTGGTGATATGCGAAGCAGTAGAGAAACACGACATCCAGTTGCTTGTGTTAGGCAGCCACGGTCGCGGAGGTATCCAAAGGGCTTTTTTGGGAAGCGTAAGCAATTACTGCGTACATAACGCTAAGTGTCCTGTTCTTGTTGTGAGGAAACGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

276

Amino Acids

30.97

Weight (kDa)

9.21

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68300
fragaria_vesca	FvH4_4g27170 FvH4_4g27170 FvH4_4g27180
malus_domestica	MD13G1040100.v1.1 MD13G1040200.v1.1 MD16G1041100.v1.1
prunus_persica	Prupe.1G312900_v2.0.a1 Prupe.1G313000_v2.0.a1
pyrus_communis	pycom13g03450 pycom13g03460
rosa_chinensis	RchiOBHm_Chr4g0434961 RchiOBHm_Chr4g0434971
rosa_laevigata	RLG00000006632 RLG00000006633
rosa_multiflora	Rmu_sc0000400.1_g000036 Rmu_sc0023421.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376140 Rroxscaffold_5G00376150
rosa_rugosa	Rorug04G0281300 Rorug04G0281400 Rorug04G0281500 Rorug04G0281500
rosa_samantha	Rh4AG336700 Rh4AG336800 Rh4BG344600 Rh4BG344700 Rh4CG359300 Rh4CG359500 Rh4DG339100 Rh4DG339200
rosa_wichuraiana	Rw4G029350 Rw4G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	89
AccII	CGCG	3 cut(s)	73, 450, 735
AciI	CCGC	5 cut(s)	22, 100, 256, 486, 735
AclWI	GGATC	1 cut(s)	656
AcoI	YGGCCR	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	612
AcuI	CTGAAG	1 cut(s)	260
AcvI	CACGTG	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	86
AfaI	GTAC	1 cut(s)	783
AfiI	CCNNNNNNNGG	6 cut(s)	13, 159, 241, 429, 577, 627
AgsI	TTSAA	4 cut(s)	33, 190, 427, 566
AjiI	CACGTC	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	12
AleI	CACNNNNGTG	2 cut(s)	50, 291
AluBI	AGCT	5 cut(s)	165, 472, 533, 590, 605
AluI	AGCT	5 cut(s)	165, 472, 533, 590, 605
Alw26I	GTCTC	3 cut(s)	143, 200, 635
AlwI	GGATC	1 cut(s)	656
AlwNI	CAGNNNCTG	2 cut(s)	19, 165
AoxI	GGCC	2 cut(s)	16, 131
ApeKI	GCWGC	5 cut(s)	165, 469, 518, 533, 723
ApoI	RAATTY	1 cut(s)	612
AspLEI	GCGC	3 cut(s)	436, 450, 586
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	3 cut(s)	394, 475, 685
AsuNHI	GCTAGC	1 cut(s)	586
BalI	TGGCCA	1 cut(s)	133
BbrPI	CACGTG	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	472
BbvI	GCAGC	5 cut(s)	152, 481, 505, 520, 735
BccI	CCATC	4 cut(s)	111, 340, 379, 464
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BciT130I	CCWGG	1 cut(s)	14
BciVI	GTATCC	1 cut(s)	752
BcoDI	GTCTC	3 cut(s)	143, 200, 635
BfaI	CTAG	3 cut(s)	225, 473, 587
BfoI	RGCGCY	2 cut(s)	437, 587
BfuI	GTATCC	1 cut(s)	752
BisI	GCNGC	5 cut(s)	166, 470, 519, 534, 724
BlsI	GCNGC	5 cut(s)	167, 471, 520, 535, 725
Bme1390I	CCNGG	1 cut(s)	14
BmgBI	CACGTC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	14
BmtI	GCTAGC	1 cut(s)	590
BpiI	GAAGAC	1 cut(s)	472
BsaAI	YACGTR	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	13, 727
BsaWI	WCCGGW	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	6 cut(s)	13, 159, 241, 429, 577, 627
Bse1I	ACTGG	2 cut(s)	522, 706
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	13, 727
BseGI	GGATG	4 cut(s)	78, 351, 456, 702
BseLI	CCNNNNNNNGG	6 cut(s)	13, 159, 241, 429, 577, 627
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	2 cut(s)	522, 706
BseRI	GAGGAG	2 cut(s)	365, 383
BseXI	GCAGC	5 cut(s)	152, 481, 505, 520, 735
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	3 cut(s)	73, 450, 735
Bsh1285I	CGRYCG	2 cut(s)	396, 733
BshFI	GGCC	2 cut(s)	18, 133
BsiEI	CGRYCG	2 cut(s)	396, 733
BsiSI	CCGG	1 cut(s)	7
BslI	CCNNNNNNNGG	6 cut(s)	13, 159, 241, 429, 577, 627
BsmAI	GTCTC	3 cut(s)	143, 200, 635
BsmBI	CGTCTC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	18, 133
Bso31I	GGTCTC	1 cut(s)	200
Bsp143I	GATC	3 cut(s)	143, 393, 661
BspACI	CCGC	5 cut(s)	22, 100, 256, 486, 735
BspANI	GGCC	2 cut(s)	18, 133
BspCNI	CTCAG	1 cut(s)	535
BspFNI	CGCG	3 cut(s)	73, 450, 735
BspLI	GGNNCC	1 cut(s)	11
BspOI	GCTAGC	1 cut(s)	590
BspPI	GGATC	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	522, 706
BssECI	CCNNGG	2 cut(s)	13, 727
BssMI	GATC	3 cut(s)	143, 393, 661
BssNI	GRCGYC	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	4 cut(s)	157, 269, 646, 731
BstACI	GRCGYC	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	777
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	5 cut(s)	20, 24, 209, 308, 588
BstDEI	CTNAG	2 cut(s)	543, 792
BstDSI	CCRYGG	1 cut(s)	727
BstF5I	GGATG	4 cut(s)	78, 351, 456, 702
BstFNI	CGCG	3 cut(s)	73, 450, 735
BstH2I	RGCGCY	2 cut(s)	437, 587
BstHHI	GCGC	3 cut(s)	436, 450, 586
BstKTI	GATC	3 cut(s)	146, 396, 664
BstMAI	GTCTC	3 cut(s)	143, 200, 635
BstMBI	GATC	3 cut(s)	143, 393, 661
BstMCI	CGRYCG	2 cut(s)	396, 733
BstMWI	GCNNNNNNNGC	6 cut(s)	307, 361, 411, 539, 732, 777
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	12
BstUI	CGCG	3 cut(s)	73, 450, 735
BstV1I	GCAGC	5 cut(s)	152, 481, 505, 520, 735
BstV2I	GAAGAC	1 cut(s)	472
BsuI	GTATCC	1 cut(s)	752
BsuRI	GGCC	2 cut(s)	18, 133
BtgI	CCRYGG	1 cut(s)	727
BtrI	CACGTC	1 cut(s)	137
BtsCI	GGATG	4 cut(s)	78, 351, 456, 702
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	168, 651
Cac8I	GCNNGC	5 cut(s)	20, 24, 209, 308, 588
CaiI	CAGNNNCTG	2 cut(s)	19, 165
CfoI	GCGC	3 cut(s)	436, 450, 586
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	782
CviAII	CATG	2 cut(s)	365, 626
CviQI	GTAC	1 cut(s)	782
DdeI	CTNAG	2 cut(s)	543, 792
DpnI	GATC	3 cut(s)	145, 395, 663
DpnII	GATC	3 cut(s)	143, 393, 661
EaeI	YGGCCR	1 cut(s)	131
EciI	GGCGGA	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	260
Eco72I	CACGTG	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	2 cut(s)	368, 629
FaiI	YATR	7 cut(s)	272, 366, 418, 516, 627, 679, 786
FatI	CATG	2 cut(s)	364, 625
FauI	CCCGC	2 cut(s)	15, 263
Fnu4HI	GCNGC	5 cut(s)	166, 470, 519, 534, 724
FokI	GGATG	4 cut(s)	65, 358, 443, 689
Fsp4HI	GCNGC	5 cut(s)	166, 470, 519, 534, 724
FspBI	CTAG	3 cut(s)	225, 473, 587
GlaI	GCGC	3 cut(s)	435, 449, 585
GluI	GCNGC	5 cut(s)	166, 470, 519, 534, 724
HaeII	RGCGCY	2 cut(s)	437, 587
HaeIII	GGCC	2 cut(s)	18, 133
HapII	CCGG	1 cut(s)	7
HhaI	GCGC	3 cut(s)	436, 450, 586
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	368, 629
Hin6I	GCGC	3 cut(s)	434, 448, 584
HinP1I	GCGC	3 cut(s)	434, 448, 584
HpaII	CCGG	1 cut(s)	7
HphI	GGTGA	3 cut(s)	394, 475, 685
Hpy188I	TCNGA	3 cut(s)	143, 236, 666
Hpy188III	TCNNGA	5 cut(s)	82, 121, 160, 197, 460
Hpy99I	CGWCG	2 cut(s)	127, 401
HpyAV	CCTTC	6 cut(s)	127, 194, 373, 433, 571, 661
HpyCH4III	ACNGT	4 cut(s)	157, 269, 646, 731
HpyCH4IV	ACGT	3 cut(s)	51, 86, 136
HpyCH4V	TGCA	4 cut(s)	168, 211, 310, 638
HpyF10VI	GCNNNNNNNGC	6 cut(s)	307, 361, 411, 539, 732, 777
HpyF3I	CTNAG	2 cut(s)	543, 792
HpySE526I	ACGT	3 cut(s)	51, 86, 136
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	2 cut(s)	368, 629
HspAI	GCGC	3 cut(s)	434, 448, 584
Kzo9I	GATC	3 cut(s)	143, 393, 661
LmnI	GCTCC	3 cut(s)	162, 352, 530
Lsp1109I	GCAGC	5 cut(s)	152, 481, 505, 520, 735
MaeI	CTAG	3 cut(s)	225, 473, 587
MaeII	ACGT	3 cut(s)	51, 86, 136
MaeIII	GTNAC	5 cut(s)	52, 87, 524, 550, 646
MalI	GATC	3 cut(s)	145, 395, 663
MboI	GATC	3 cut(s)	143, 393, 661
MboII	GAAGA	3 cut(s)	385, 388, 472
MfeI	CAATTG	2 cut(s)	33, 427
MlsI	TGGCCA	1 cut(s)	133
MluCI	AATT	5 cut(s)	33, 281, 427, 612, 772
MluNI	TGGCCA	1 cut(s)	133
MmeI	TCCRAC	1 cut(s)	576
Mox20I	TGGCCA	1 cut(s)	133
MscI	TGGCCA	1 cut(s)	133
MslI	CAYNNNNRTG	2 cut(s)	50, 291
Msp20I	TGGCCA	1 cut(s)	133
MspI	CCGG	1 cut(s)	7
MspR9I	CCNGG	1 cut(s)	14
MunI	CAATTG	2 cut(s)	33, 427
Mva1269I	GAATGC	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	14
MvnI	CGCG	3 cut(s)	73, 450, 735
MwoI	GCNNNNNNNGC	6 cut(s)	307, 361, 411, 539, 732, 777
NdeII	GATC	3 cut(s)	143, 393, 661
NheI	GCTAGC	1 cut(s)	586
NlaIII	CATG	2 cut(s)	368, 629
NlaIV	GGNNCC	1 cut(s)	11
NmuCI	GTSAC	3 cut(s)	52, 87, 646
OliI	CACNNNNGTG	2 cut(s)	50, 291
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PctI	GAATGC	1 cut(s)	179
PkrI	GCNGC	5 cut(s)	167, 471, 520, 535, 725
Ple19I	CGATCG	1 cut(s)	396
PmaCI	CACGTG	1 cut(s)	52
PmlI	CACGTG	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	12
PspCI	CACGTG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	16
PstNI	CAGNNNCTG	2 cut(s)	19, 165
PvuI	CGATCG	1 cut(s)	396
RsaI	GTAC	1 cut(s)	783
RsaNI	GTAC	1 cut(s)	782
RseI	CAYNNNNRTG	2 cut(s)	50, 291
SatI	GCNGC	5 cut(s)	166, 470, 519, 534, 724
Sau3AI	GATC	3 cut(s)	143, 393, 661
Sau96I	GGNCC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	14
SmiMI	CAYNNNNRTG	2 cut(s)	50, 291
Sse9I	AATT	5 cut(s)	33, 281, 427, 612, 772
SsiI	CCGC	5 cut(s)	22, 100, 256, 486, 735
SspMI	CTAG	3 cut(s)	225, 473, 587
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	4 cut(s)	157, 269, 646, 731
TaiI	ACGT	3 cut(s)	54, 89, 139
TaqI	TCGA	4 cut(s)	183, 198, 396, 438
TasI	AATT	5 cut(s)	33, 281, 427, 612, 772
TscAI	CASTG	2 cut(s)	175, 651
TseFI	GTSAC	3 cut(s)	52, 87, 646
TseI	GCWGC	5 cut(s)	165, 469, 518, 533, 723
Tsp45I	GTSAC	3 cut(s)	52, 87, 646
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	2 cut(s)	175, 651
XapI	RAATTY	1 cut(s)	612
XspI	CTAG	3 cut(s)	225, 473, 587
ZraI	GACGTC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.