Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004080

Physical Location & Seq

Genomic Coordinates Forward (+)

64571541 .. 64574149

Gene Structure 2609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG336800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGCGAGGTAGTAGAAAATGGAGGAGCTGAGATTGCTGAGAAGCCAGTTATGGTGGCAATTGATGAAAGTGAGTGCAGTCACTATGCCCTCATGTGGGTTATTGACAACCTCAAAGAGTCCATAACTACCAAGTCACCGCTGCTCATCTTCATGGCGCAGCCTCCTCTGGCCAGCAGCATCACATTCGCGGCCCCTCTCGGGGCTGCTCGCATGTATTGCCCTCCCACTCCAGAGTTTGCCAACAATATGCAGGAAAATCATAGGAAGCTTACAGTGGCTCTGTTGGAGAGAGCTAAAGACATATGTGCTAGTCATGGGGTGACTGCGAAGACGGTTACAGATATTGGGGATGCTAAAACAGCCATATGTGCTGCAGTTCTAAAATACAATGTCAATTTGCTTGTTCTAGGTGAGCGTGGACTCGGAAAAATCAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

147

Amino Acids

15.83

Weight (kDa)

6.29

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	15 - 147	1.5e-10	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68300
fragaria_vesca	FvH4_4g27170 FvH4_4g27170 FvH4_4g27180
malus_domestica	MD13G1040100.v1.1 MD13G1040200.v1.1 MD16G1041100.v1.1
prunus_persica	Prupe.1G312900_v2.0.a1 Prupe.1G313000_v2.0.a1
pyrus_communis	pycom13g03450 pycom13g03460
rosa_chinensis	RchiOBHm_Chr4g0434961 RchiOBHm_Chr4g0434971
rosa_laevigata	RLG00000006632 RLG00000006633
rosa_multiflora	Rmu_sc0000400.1_g000036 Rmu_sc0023421.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376140 Rroxscaffold_5G00376150
rosa_rugosa	Rorug04G0281300 Rorug04G0281400 Rorug04G0281500 Rorug04G0281500
rosa_samantha	Rh4AG336700 Rh4AG336800 Rh4BG344600 Rh4BG344700 Rh4CG359300 Rh4CG359500 Rh4DG339100 Rh4DG339200
rosa_wichuraiana	Rw4G029350 Rw4G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	191
AciI	CCGC	2 cut(s)	140, 191
AcoI	YGGCCR	1 cut(s)	171
AfiI	CCNNNNNNNGG	4 cut(s)	96, 97, 201, 202
AluBI	AGCT	3 cut(s)	29, 271, 296
AluI	AGCT	3 cut(s)	29, 271, 296
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	2 cut(s)	171, 192
ApeKI	GCWGC	5 cut(s)	142, 160, 177, 206, 374
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	3 cut(s)	129, 334, 425
AvaI	CYCGRG	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	5 cut(s)	129, 172, 189, 193, 361
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BfaI	CTAG	2 cut(s)	312, 410
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	6 cut(s)	143, 161, 178, 192, 207, 375
BlsI	GCNGC	6 cut(s)	144, 162, 179, 193, 208, 376
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	195
BmsI	GCATC	2 cut(s)	189, 343
BpiI	GAAGAC	1 cut(s)	338
BpmI	CTGGAG	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 97, 201, 202
Bse1I	ACTGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	4 cut(s)	96, 97, 201, 202
BseMII	CTCAG	2 cut(s)	21, 30
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	2 cut(s)	39, 156
BseXI	GCAGC	5 cut(s)	129, 172, 189, 193, 361
BsgI	GTGCAG	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	2 cut(s)	173, 194
BsiHKCI	CYCGRG	1 cut(s)	200
BslI	CCNNNNNNNGG	4 cut(s)	96, 97, 201, 202
BsnI	GGCC	2 cut(s)	173, 194
BsoBI	CYCGRG	1 cut(s)	200
BspACI	CCGC	2 cut(s)	140, 191
BspANI	GGCC	2 cut(s)	173, 194
BspCNI	CTCAG	2 cut(s)	22, 31
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	195
BspMAI	CTGCAG	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	277, 337
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	175, 211
BstDEI	CTNAG	2 cut(s)	30, 39
BstF5I	GGATG	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 219, 362, 371
BstNSI	RCATGY	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	375
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	5 cut(s)	129, 172, 189, 193, 361
BstV2I	GAAGAC	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	173, 194
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	175, 211
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	193
CviAII	CATG	4 cut(s)	94, 154, 214, 317
DdeI	CTNAG	2 cut(s)	30, 39
EaeI	YGGCCR	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	200
FaeI	CATG	4 cut(s)	97, 157, 217, 320
FatI	CATG	4 cut(s)	93, 153, 213, 316
FauNDI	CATATG	2 cut(s)	305, 368
Fnu4HI	GCNGC	6 cut(s)	143, 161, 178, 192, 207, 375
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	6 cut(s)	143, 161, 178, 192, 207, 375
FspBI	CTAG	2 cut(s)	312, 410
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	6 cut(s)	143, 161, 178, 192, 207, 375
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	173, 194
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	4 cut(s)	97, 157, 217, 320
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	2 cut(s)	119, 423
HphI	GGTGA	3 cut(s)	129, 334, 425
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	1 cut(s)	428
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	422
HpyCH4III	ACNGT	2 cut(s)	277, 337
HpyCH4V	TGCA	3 cut(s)	78, 253, 377
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 219, 362, 371
HpyF3I	CTNAG	2 cut(s)	30, 39
Hsp92II	CATG	4 cut(s)	97, 157, 217, 320
HspAI	GCGC	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	5 cut(s)	60, 155, 187, 239, 246
Lsp1109I	GCAGC	5 cut(s)	129, 172, 189, 193, 361
LweI	GCATC	2 cut(s)	189, 343
MaeI	CTAG	2 cut(s)	312, 410
MaeIII	GTNAC	4 cut(s)	80, 135, 322, 337
MboII	GAAGA	2 cut(s)	142, 343
MfeI	CAATTG	1 cut(s)	60
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	2 cut(s)	60, 397
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	128, 417
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	7 cut(s)	17, 101, 122, 174, 177, 207, 234
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	142
MunI	CAATTG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	4 cut(s)	35, 219, 362, 371
NdeI	CATATG	2 cut(s)	305, 368
NlaIII	CATG	4 cut(s)	97, 157, 217, 320
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	3 cut(s)	80, 135, 322
NspI	RCATGY	1 cut(s)	217
PkrI	GCNGC	6 cut(s)	144, 162, 179, 193, 208, 376
PleI	GAGTC	2 cut(s)	127, 417
PpsI	GAGTC	2 cut(s)	127, 417
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	193
PstI	CTGCAG	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	152
SatI	GCNGC	6 cut(s)	143, 161, 178, 192, 207, 375
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	2 cut(s)	128, 417
SetI	ASST	7 cut(s)	12, 31, 114, 273, 298, 415, 443
SfaNI	GCATC	2 cut(s)	189, 343
SfcI	CTRYAG	1 cut(s)	375
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	60, 397
SsiI	CCGC	2 cut(s)	140, 191
SspMI	CTAG	2 cut(s)	312, 410
TaaI	ACNGT	2 cut(s)	277, 337
TasI	AATT	2 cut(s)	60, 397
TauI	GCSGC	1 cut(s)	194
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	3 cut(s)	80, 135, 322
TseI	GCWGC	5 cut(s)	142, 160, 177, 206, 374
Tsp45I	GTSAC	3 cut(s)	80, 135, 322
TspDTI	ATGAA	2 cut(s)	81, 142
TspRI	CASTG	1 cut(s)	282
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	2 cut(s)	312, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.