Rh4BG344700

Universal stress protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004080
Physical Location & Seq
Forward (+)
50747766 .. 50749123
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG344700.1

Sequence Viewer

Length: 525 bp
ATGGGCGAGGTAGTAGAAAACGGAGGAGCTGAGATTGCTGAGAAGCCAGTTATGGTGGCAATTGATGAAAGTGAGTGCAGTCACTATGCCCTCATGTGGGTTATTGACAACCTCAAAGAGTCCATAACTACCAAGTCGCCGCTGCTCATCTTCATGGCGCAGCCTCCTCCGGCCACCAGCATCACATTCGCGGCGCCTCTCGGGGCTGCTCGCATGTATTGCCCTCCCACTCCAGAGTTTGCCAACAATATGCAGGAAAATCATAGGAAGCTTACAGTGGCTCTGTTGGAGAGAGCTAAAGACATATGTGCTAGTCATGGGGTGACTGCGAAGACAGTTACAGAGATTGGGGATGCTAAAACAGCCATATGTGCTGCAGTTCTAAAATACAATGTCAATTTGCTTGTTCTAGGTGAGCGTGGACTCGGAAAAATCAAAAGGGCTATCCTTGGGAGTGTTAGCAACTACTGTGTTCAGAATGCCAAGTGCCCTGTTCTTGTTGTGAAGAAACCACAGGTTGTTTGA

Protein Analysis

174

Amino Acids

18.68

Weight (kDa)

8.2

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 15 - 169 3.7e-25 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccII CGCG 1 cut(s) 191
AciI CCGC 2 cut(s) 140, 191
AcoI YGGCCR 1 cut(s) 171
AcyI GRCGYC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 96, 97
AluBI AGCT 3 cut(s) 29, 271, 296
AluI AGCT 3 cut(s) 29, 271, 296
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 4 cut(s) 142, 160, 206, 374
AspLEI GCGC 2 cut(s) 160, 196
AsuHPI GGTGA 2 cut(s) 334, 425
AvaI CYCGRG 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 491
BanI GGYRCC 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 338
BbvI GCAGC 4 cut(s) 129, 172, 193, 361
BcgI CGANNNNNNTGC 2 cut(s) 169, 203
BfaI CTAG 2 cut(s) 312, 410
BfmI CTRYAG 1 cut(s) 375
BfoI RGCGCY 1 cut(s) 197
BisI GCNGC 6 cut(s) 140, 143, 161, 192, 207, 375
BlsI GCNGC 6 cut(s) 141, 144, 162, 193, 208, 376
BmeT110I CYCGRG 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 195
BmsI GCATC 2 cut(s) 189, 343
BpiI GAAGAC 1 cut(s) 338
BpmI CTGGAG 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 448
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 97
Bse1I ACTGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 2 cut(s) 96, 97
BseMII CTCAG 2 cut(s) 21, 30
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 2 cut(s) 39, 156
BseSI GKGCMC 1 cut(s) 491
BseXI GCAGC 4 cut(s) 129, 172, 193, 361
BsgI GTGCAG 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 1 cut(s) 173
BshNI GGYRCC 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 96, 97
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 491
BspACI CCGC 2 cut(s) 140, 191
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 2 cut(s) 22, 31
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 1 cut(s) 195
BspMAI CTGCAG 1 cut(s) 379
BspT107I GGYRCC 1 cut(s) 193
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 448
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 448
Bst4CI ACNGT 3 cut(s) 277, 337, 470
BstACI GRCGYC 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 2 cut(s) 30, 39
BstF5I GGATG 1 cut(s) 358
BstFNI CGCG 1 cut(s) 191
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 2 cut(s) 160, 196
BstMWI GCNNNNNNNGC 4 cut(s) 35, 219, 362, 371
BstNSI RCATGY 1 cut(s) 217
BstSFI CTRYAG 1 cut(s) 375
BstSLI GKGCMC 1 cut(s) 491
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 4 cut(s) 129, 172, 193, 361
BstV2I GAAGAC 1 cut(s) 338
BsuRI GGCC 1 cut(s) 173
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 211
CfoI GCGC 2 cut(s) 160, 196
CviAII CATG 4 cut(s) 94, 154, 214, 317
DdeI CTNAG 2 cut(s) 30, 39
DinI GGCGCC 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 448
Eco88I CYCGRG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 448
EgeI GGCGCC 1 cut(s) 195
EheI GGCGCC 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 4 cut(s) 97, 157, 217, 320
FatI CATG 4 cut(s) 93, 153, 213, 316
FauNDI CATATG 2 cut(s) 305, 368
Fnu4HI GCNGC 6 cut(s) 140, 143, 161, 192, 207, 375
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 6 cut(s) 140, 143, 161, 192, 207, 375
FspBI CTAG 2 cut(s) 312, 410
GlaI GCGC 2 cut(s) 159, 195
GluI GCNGC 6 cut(s) 140, 143, 161, 192, 207, 375
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 1 cut(s) 173
HapII CCGG 1 cut(s) 170
HhaI GCGC 2 cut(s) 160, 196
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 4 cut(s) 97, 157, 217, 320
Hin6I GCGC 2 cut(s) 158, 194
HinP1I GCGC 2 cut(s) 158, 194
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 2 cut(s) 119, 423
HpaII CCGG 1 cut(s) 170
HphI GGTGA 2 cut(s) 334, 425
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 2 cut(s) 428, 477
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 422
HpyCH4III ACNGT 3 cut(s) 277, 337, 470
HpyCH4V TGCA 3 cut(s) 78, 253, 377
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 219, 362, 371
HpyF3I CTNAG 2 cut(s) 30, 39
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 4 cut(s) 97, 157, 217, 320
HspAI GCGC 2 cut(s) 158, 194
KasI GGCGCC 1 cut(s) 193
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 7 cut(s) 60, 183, 190, 239, 246, 500, 504
Lsp1109I GCAGC 4 cut(s) 129, 172, 193, 361
LweI GCATC 2 cut(s) 189, 343
MaeI CTAG 2 cut(s) 312, 410
MaeIII GTNAC 3 cut(s) 80, 322, 337
MboII GAAGA 3 cut(s) 142, 343, 517
MfeI CAATTG 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 491
MluCI AATT 2 cut(s) 60, 397
Mly113I GGCGCC 1 cut(s) 194
MlyI GAGTC 2 cut(s) 128, 417
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 7 cut(s) 17, 101, 122, 174, 177, 207, 234
MslI CAYNNNNRTG 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 1 cut(s) 170
MunI CAATTG 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 484
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 4 cut(s) 35, 219, 362, 371
NarI GGCGCC 1 cut(s) 194
NdeI CATATG 2 cut(s) 305, 368
NlaIII CATG 4 cut(s) 97, 157, 217, 320
NlaIV GGNNCC 1 cut(s) 195
NmuCI GTSAC 2 cut(s) 80, 322
NspI RCATGY 1 cut(s) 217
PctI GAATGC 1 cut(s) 484
PkrI GCNGC 6 cut(s) 141, 144, 162, 193, 208, 376
PleI GAGTC 2 cut(s) 127, 417
PluTI GGCGCC 1 cut(s) 197
PpsI GAGTC 2 cut(s) 127, 417
PspN4I GGNNCC 1 cut(s) 195
PstI CTGCAG 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 152
SatI GCNGC 6 cut(s) 140, 143, 161, 192, 207, 375
SchI GAGTC 2 cut(s) 128, 417
SduI GDGCHC 1 cut(s) 491
SetI ASST 7 cut(s) 12, 31, 114, 273, 298, 415, 519
SfaNI GCATC 2 cut(s) 189, 343
SfcI CTRYAG 1 cut(s) 375
SfoI GGCGCC 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 2 cut(s) 60, 397
SsiI CCGC 2 cut(s) 140, 191
SspDI GGCGCC 1 cut(s) 193
SspMI CTAG 2 cut(s) 312, 410
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 3 cut(s) 277, 337, 470
TasI AATT 2 cut(s) 60, 397
TauI GCSGC 2 cut(s) 142, 194
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 2 cut(s) 80, 322
TseI GCWGC 4 cut(s) 142, 160, 206, 374
Tsp45I GTSAC 2 cut(s) 80, 322
TspDTI ATGAA 2 cut(s) 81, 142
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 1 cut(s) 282
XceI RCATGY 1 cut(s) 217
XspI CTAG 2 cut(s) 312, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.