Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004080

Physical Location & Seq

Genomic Coordinates Forward (+)

58577155 .. 58577835

Gene Structure 681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40340

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAGCAGCAGGGAGAGGAGAAGATGAAGAAGAAGGTGATGGTGGCAATTGATGAGAGCGAGCTTAGCCACTACGCGCTAGAATGGACCCTCGAAAATCTTGGCAACACCATTCATAATTCTGAGCTACTCGTCTTCACTGCACAGCCCACCACCATTGATTTTGGTTACACAAACAATGTTCTCGATCCATTTTCTCCTGAGCTGGTAGCAGCTATACAAGAAAACTACAAGAAGGTGGCATTGGTTTTGCTGGATAAAGCTAAAGACATCTGCGCCAACCATGGGGTTGTTGCAGAGACAGTAACAGAGGTTGGTGATCCTAAAAAGGCAATATGTGAAGCGGTAGAAAAATTCAACATCGAGTTTCTAGTACTAGGCAGTCATGGTCGAGGAACTGTACAAAGGTATTTCTTAAGTTTTGGGGATATTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

145

Amino Acids

16.16

Weight (kDa)

4.85

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	10 - 139	3.3e-18	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68300
fragaria_vesca	FvH4_4g27170 FvH4_4g27170 FvH4_4g27180
malus_domestica	MD13G1040100.v1.1 MD13G1040200.v1.1 MD16G1041100.v1.1
prunus_persica	Prupe.1G312900_v2.0.a1 Prupe.1G313000_v2.0.a1
pyrus_communis	pycom13g03450 pycom13g03460
rosa_chinensis	RchiOBHm_Chr4g0434961 RchiOBHm_Chr4g0434971
rosa_laevigata	RLG00000006632 RLG00000006633
rosa_multiflora	Rmu_sc0000400.1_g000036 Rmu_sc0023421.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376140 Rroxscaffold_5G00376150
rosa_rugosa	Rorug04G0281300 Rorug04G0281400 Rorug04G0281500 Rorug04G0281500
rosa_samantha	Rh4AG336700 Rh4AG336800 Rh4BG344600 Rh4BG344700 Rh4CG359300 Rh4CG359500 Rh4DG339100 Rh4DG339200
rosa_wichuraiana	Rw4G029350 Rw4G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	77
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	2 cut(s)	182, 314
AcsI	RAATTY	1 cut(s)	353
AfaI	GTAC	2 cut(s)	375, 402
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflII	CTTAAG	1 cut(s)	415
AgsI	TTSAA	1 cut(s)	358
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	5 cut(s)	64, 127, 205, 215, 263
AluI	AGCT	5 cut(s)	64, 127, 205, 215, 263
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	2 cut(s)	182, 314
ApeKI	GCWGC	2 cut(s)	7, 212
ApoI	RAATTY	1 cut(s)	353
AspLEI	GCGC	2 cut(s)	79, 278
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	49, 329
AvaII	GGWCC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	19, 224
BccI	CCATC	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	3 cut(s)	80, 371, 377
BfrI	CTTAAG	1 cut(s)	415
BisI	GCNGC	2 cut(s)	8, 213
BlpI	GCTNAGC	1 cut(s)	65
BlsI	GCNGC	2 cut(s)	9, 214
BmcAI	AGTACT	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	127
Bpu10I	CCTNAGC	1 cut(s)	201
Bpu1102I	GCTNAGC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	114, 192
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	19, 224
BsgI	GTGCAG	1 cut(s)	126
Bsh1236I	CGCG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	293
Bsp1407I	TGTACA	1 cut(s)	400
Bsp143I	GATC	2 cut(s)	187, 319
Bsp1720I	GCTNAGC	1 cut(s)	65
Bsp19I	CCATGG	1 cut(s)	283
BspACI	CCGC	1 cut(s)	344
BspCNI	CTCAG	2 cut(s)	115, 193
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	182, 314
BspTI	CTTAAG	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	400
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	2 cut(s)	187, 319
BssT1I	CCWWGG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	304, 400
BstAFI	CTTAAG	1 cut(s)	415
BstAUI	TGTACA	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	3 cut(s)	65, 123, 201
BstDSI	CCRYGG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	2 cut(s)	79, 278
BstKTI	GATC	2 cut(s)	190, 322
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	187, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	19, 224
BstV2I	GAAGAC	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	62
CfoI	GCGC	2 cut(s)	79, 278
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	374, 401
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviAII	CATG	2 cut(s)	284, 386
CviJI	RGCY	7 cut(s)	64, 69, 127, 148, 205, 215, 263
CviKI_1	RGCY	7 cut(s)	64, 69, 127, 148, 205, 215, 263
CviQI	GTAC	2 cut(s)	374, 401
DdeI	CTNAG	3 cut(s)	65, 123, 201
DpnI	GATC	2 cut(s)	189, 321
DpnII	GATC	2 cut(s)	187, 319
Eco130I	CCWWGG	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	2 cut(s)	287, 389
FaiI	YATR	6 cut(s)	117, 218, 285, 337, 387, 436
FatI	CATG	2 cut(s)	283, 385
Fnu4HI	GCNGC	2 cut(s)	8, 213
Fsp4HI	GCNGC	2 cut(s)	8, 213
FspBI	CTAG	3 cut(s)	80, 371, 377
GlaI	GCGC	2 cut(s)	78, 277
GluI	GCNGC	2 cut(s)	8, 213
HhaI	GCGC	2 cut(s)	79, 278
Hin1II	CATG	2 cut(s)	287, 389
Hin6I	GCGC	2 cut(s)	77, 276
HinP1I	GCGC	2 cut(s)	77, 276
HphI	GGTGA	2 cut(s)	49, 329
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	185, 200
HpyAV	CCTTC	2 cut(s)	28, 229
HpyCH4III	ACNGT	2 cut(s)	304, 400
HpyCH4V	TGCA	2 cut(s)	143, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	3 cut(s)	65, 123, 201
Hsp92II	CATG	2 cut(s)	287, 389
HspAI	GCGC	2 cut(s)	77, 276
Kzo9I	GATC	2 cut(s)	187, 319
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	191, 213, 239
Lsp1109I	GCAGC	2 cut(s)	19, 224
MaeI	CTAG	3 cut(s)	80, 371, 377
MaeIII	GTNAC	2 cut(s)	167, 304
MalI	GATC	2 cut(s)	189, 321
MboI	GATC	2 cut(s)	187, 319
MboII	GAAGA	4 cut(s)	34, 40, 43, 127
MfeI	CAATTG	1 cut(s)	48
MluCI	AATT	3 cut(s)	48, 118, 353
MnlI	CCTC	4 cut(s)	10, 101, 304, 386
MseI	TTAA	1 cut(s)	416
MspCI	CTTAAG	1 cut(s)	415
MunI	CAATTG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	66
NcoI	CCATGG	1 cut(s)	283
NdeII	GATC	2 cut(s)	187, 319
NlaIII	CATG	2 cut(s)	287, 389
NlaIV	GGNNCC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	9, 214
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	87
RsaI	GTAC	2 cut(s)	375, 402
RsaNI	GTAC	2 cut(s)	374, 401
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	2 cut(s)	8, 213
Sau3AI	GATC	2 cut(s)	187, 319
Sau96I	GGNCC	1 cut(s)	87
ScaI	AGTACT	1 cut(s)	375
SetI	ASST	9 cut(s)	39, 66, 129, 207, 217, 240, 265, 315, 410
SinI	GGWCC	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
Sse9I	AATT	3 cut(s)	48, 118, 353
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	3 cut(s)	80, 371, 377
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	304, 400
TaqI	TCGA	4 cut(s)	93, 186, 363, 391
TasI	AATT	3 cut(s)	48, 118, 353
TatI	WGTACW	2 cut(s)	373, 400
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	2 cut(s)	7, 212
TspDTI	ATGAA	2 cut(s)	41, 104
TspRI	CASTG	1 cut(s)	145
Vha464I	CTTAAG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	87
XapI	RAATTY	1 cut(s)	353
XspI	CTAG	3 cut(s)	80, 371, 377
ZrmI	AGTACT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.