Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004080

Physical Location & Seq

Genomic Coordinates Forward (+)

2289011 .. 2290286

Gene Structure 1276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03460.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGAGAGGCGATTCCAAGAGGAGAAGAAAGAATGGGAGAAGCGGTTGCAAAAGGAGCCGAGAAGAAGGTGATGGTGGCCATTGACGAGAGCGAGAGCAGTCATTACGCTCTCATGTGGGTTCTCGACAACCTCAAAGACTCCATAACCGACTCGCCCTTGACCATCTTCATGGCTCAGACTCCCTCCAACGGCAACATCACCTTCTCGGCGTCGCTCGGCGCTGCTCGCATGTACTATCCTACGTCTTCCAGTCAGGAGTTTGTTAACTGTTCCCAAGAAAGTCACAGGAAGTTTGCGTTGGCACTGTTGGAGAAAGCTAAGCAGATATGTGCTAGTCGTGGGGTAAATGCAGAGACAGTCACAGAAGTTGGAGATCCGAAAGCTGCCATATGTGATGCTGTCAAAAAACACGGCATCAAGCTGCTAATTGTAGGCGAGCGTGGGCTCGGAAAAATCCAAAGGGCAATTCTTGGTAGCGTCAGCGATTACTGTGTTCAGTACGCCAAGTGCCCTGTCCTTGTGGTGAAGAAATCAAAAGCTGAAGCTCTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

186

Amino Acids

19.88

Weight (kDa)

8.23

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68300
fragaria_vesca	FvH4_4g27170 FvH4_4g27170 FvH4_4g27180
malus_domestica	MD13G1040100.v1.1 MD13G1040200.v1.1 MD16G1041100.v1.1
prunus_persica	Prupe.1G312900_v2.0.a1 Prupe.1G313000_v2.0.a1
pyrus_communis	pycom13g03450 pycom13g03460
rosa_chinensis	RchiOBHm_Chr4g0434961 RchiOBHm_Chr4g0434971
rosa_laevigata	RLG00000006632 RLG00000006633
rosa_multiflora	Rmu_sc0000400.1_g000036 Rmu_sc0023421.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376140 Rroxscaffold_5G00376150
rosa_rugosa	Rorug04G0281300 Rorug04G0281400 Rorug04G0281500 Rorug04G0281500
rosa_samantha	Rh4AG336700 Rh4AG336800 Rh4BG344600 Rh4BG344700 Rh4CG359300 Rh4CG359500 Rh4DG339100 Rh4DG339200
rosa_wichuraiana	Rw4G029350 Rw4G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	1 cut(s)	371
AcoI	YGGCCR	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	2 cut(s)	236, 503
AfiI	CCNNNNNNNGG	1 cut(s)	191
AjuI	GAANNNNNNNTTGG	4 cut(s)	284, 316, 453, 485
AluBI	AGCT	5 cut(s)	320, 386, 424, 542, 548
AluI	AGCT	5 cut(s)	320, 386, 424, 542, 548
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	1 cut(s)	371
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	3 cut(s)	224, 386, 424
AspLEI	GCGC	1 cut(s)	224
AsuHPI	GGTGA	3 cut(s)	82, 193, 538
BaeGI	GKGCMC	1 cut(s)	515
BalI	TGGCCA	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	211, 373, 411
BccI	CCATC	2 cut(s)	67, 173
BceAI	ACGGC	2 cut(s)	208, 430
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	1 cut(s)	336
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	3 cut(s)	225, 387, 425
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	3 cut(s)	226, 388, 426
BmiI	GGNNCC	1 cut(s)	58
BmsI	GCATC	2 cut(s)	388, 426
BpiI	GAAGAC	1 cut(s)	240
Bpu1102I	GCTNAGC	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	515
BseXI	GCAGC	3 cut(s)	211, 373, 411
BshFI	GGCC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	450, 515
Bsp143I	GATC	1 cut(s)	376
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	376
BssNI	GRCGYC	1 cut(s)	212
Bst4CI	ACNGT	4 cut(s)	272, 309, 361, 494
BstACI	GRCGYC	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	229, 440
BstDEI	CTNAG	2 cut(s)	177, 321
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 228
BstNSI	RCATGY	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	515
BstV1I	GCAGC	3 cut(s)	211, 373, 411
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	376
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	229, 440
CfoI	GCGC	1 cut(s)	224
CseI	GACGC	2 cut(s)	201, 469
Csp6I	GTAC	2 cut(s)	235, 502
CviAII	CATG	3 cut(s)	115, 172, 232
CviJI	RGCY	9 cut(s)	59, 80, 176, 320, 386, 424, 448, 542, 548
CviKI_1	RGCY	9 cut(s)	59, 80, 176, 320, 386, 424, 448, 542, 548
CviQI	GTAC	2 cut(s)	235, 502
DdeI	CTNAG	2 cut(s)	177, 321
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	450
FaeI	CATG	3 cut(s)	118, 175, 235
FaiI	YATR	7 cut(s)	116, 146, 173, 233, 331, 392, 394
FatI	CATG	3 cut(s)	114, 171, 231
FauNDI	CATATG	1 cut(s)	392
Fnu4HI	GCNGC	3 cut(s)	225, 387, 425
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	3 cut(s)	225, 387, 425
FspBI	CTAG	1 cut(s)	336
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	3 cut(s)	225, 387, 425
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	80
HgaI	GACGC	2 cut(s)	201, 469
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	3 cut(s)	118, 175, 235
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	4 cut(s)	13, 140, 152, 181
HpaI	GTTAAC	1 cut(s)	268
HphI	GGTGA	3 cut(s)	82, 193, 538
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	3 cut(s)	180, 381, 452
Hpy188III	TCNNGA	2 cut(s)	125, 257
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	2 cut(s)	61, 214
HpyCH4III	ACNGT	4 cut(s)	272, 309, 361, 494
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	2 cut(s)	50, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 228
HpyF3I	CTNAG	2 cut(s)	177, 321
HpySE526I	ACGT	1 cut(s)	245
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	118, 175, 235
HspAI	GCGC	1 cut(s)	222
KspAI	GTTAAC	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	4 cut(s)	242, 265, 274, 528
Lsp1109I	GCAGC	3 cut(s)	211, 373, 411
LweI	GCATC	2 cut(s)	388, 426
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	284, 361
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	5 cut(s)	38, 76, 160, 240, 541
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	2 cut(s)	450, 515
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	2 cut(s)	429, 468
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	3 cut(s)	134, 146, 175
MmeI	TCCRAC	3 cut(s)	213, 291, 352
MnlI	CCTC	3 cut(s)	14, 143, 196
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	170
Msp20I	TGGCCA	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	56, 228
NdeI	CATATG	1 cut(s)	392
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	3 cut(s)	118, 175, 235
NlaIV	GGNNCC	1 cut(s)	58
NmeAIII	GCCGAG	3 cut(s)	85, 188, 198
NmuCI	GTSAC	2 cut(s)	284, 361
NspI	RCATGY	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	226, 388, 426
PleI	GAGTC	3 cut(s)	134, 146, 175
PpsI	GAGTC	3 cut(s)	134, 146, 175
PspN4I	GGNNCC	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	2 cut(s)	236, 503
RsaNI	GTAC	2 cut(s)	235, 502
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	3 cut(s)	225, 387, 425
Sau3AI	GATC	1 cut(s)	376
SchI	GAGTC	3 cut(s)	134, 146, 175
SduI	GDGCHC	2 cut(s)	450, 515
SetI	ASST	9 cut(s)	72, 135, 206, 248, 322, 388, 426, 544, 550
SfaNI	GCATC	2 cut(s)	388, 426
SmiMI	CAYNNNNRTG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	429, 468
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	336
TaaI	ACNGT	4 cut(s)	272, 309, 361, 494
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	126
TasI	AATT	2 cut(s)	429, 468
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	2 cut(s)	284, 361
TseI	GCWGC	3 cut(s)	224, 386, 424
Tsp45I	GTSAC	2 cut(s)	284, 361
TspDTI	ATGAA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	312
XceI	RCATGY	1 cut(s)	235
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.