Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004080

Physical Location & Seq

Genomic Coordinates Reverse (-)

30327652 .. 30329802

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G312900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTGAGGCAATGGAAAACGGAACTGGCACTGACAAGAAGGTGATGGTGGCCATTGATGAAAGCGATTGCAGTCACTACGCTCTCATGTGGGTTCTTGACAACCTCAAAGACTCTATAGCCAAGTCTCCCTTGATCATCTTCGTGGCTCAGCCACCTGCCACCGGAAATATAACATTTGCTGCGCCTCTCGGCGTTGCTCGCATGTATTACCCTATTTCATCCACTCCGGGTTATGTTGAATCTGCCCAGGAGAATCATAGGAAGTTTGCGGTGGCTCTATTGGAGAAAGCTAAACAGATTTGTGCTGGTCATGGGGTAGAGGCAAAGGTCGTTACAGAGATTGGAGATCCTAAAACAGCCATATGTGATGCTGTTGAAAAACACAACATCAATTTGCTTATTCTAGGGGAGCGTGGACATGGCACAATCAAAAGAGCCATACTTGGCAGTGTCAGCAACTACTGCGTTCAAAATGCCAAGTGCCCCGTTCTGGTCGTGAAGAAAGCACAAGTTCAAGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

176

Amino Acids

18.75

Weight (kDa)

7.65

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68300
fragaria_vesca	FvH4_4g27170 FvH4_4g27170 FvH4_4g27180
malus_domestica	MD13G1040100.v1.1 MD13G1040200.v1.1 MD16G1041100.v1.1
prunus_persica	Prupe.1G312900_v2.0.a1 Prupe.1G313000_v2.0.a1
pyrus_communis	pycom13g03450 pycom13g03460
rosa_chinensis	RchiOBHm_Chr4g0434961 RchiOBHm_Chr4g0434971
rosa_laevigata	RLG00000006632 RLG00000006633
rosa_multiflora	Rmu_sc0000400.1_g000036 Rmu_sc0023421.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376140 Rroxscaffold_5G00376150
rosa_rugosa	Rorug04G0281300 Rorug04G0281400 Rorug04G0281500 Rorug04G0281500
rosa_samantha	Rh4AG336700 Rh4AG336800 Rh4BG344600 Rh4BG344700 Rh4CG359300 Rh4CG359500 Rh4DG339100 Rh4DG339200
rosa_wichuraiana	Rw4G029350 Rw4G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	166
Acc36I	ACCTGC	1 cut(s)	166
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	164, 493
AgsI	TTSAA	4 cut(s)	242, 380, 473, 518
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	488
BalI	TGGCCA	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	251
BclI	TGATCA	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	166
BisI	GCNGC	1 cut(s)	183
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	2 cut(s)	231, 251
BmrFI	CCNGG	2 cut(s)	231, 251
BmsI	GCATC	1 cut(s)	361
Bpu10I	CCTNAGC	1 cut(s)	6
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	249
BsaWI	WCCGGW	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 493
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	164, 493
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	165, 230
BslI	CCNNNNNNNGG	2 cut(s)	164, 493
BsmAI	GTCTC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	2 cut(s)	135, 349
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	2 cut(s)	135, 349
Bst2UI	CCWGG	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	465
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	6, 150
BstF5I	GGATG	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	2 cut(s)	138, 352
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	2 cut(s)	135, 349
BstMWI	GCNNNNNNNGC	3 cut(s)	201, 456, 465
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	2 cut(s)	229, 249
BstSFI	CTRYAG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	488
BstV1I	GCAGC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	221
BtsI	GCAGTG	1 cut(s)	457
BtsIMutI	CAGTG	2 cut(s)	30, 457
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	187
CviAII	CATG	4 cut(s)	88, 205, 314, 422
CviJI	RGCY	9 cut(s)	5, 53, 122, 149, 154, 278, 293, 362, 440
CviKI_1	RGCY	9 cut(s)	5, 53, 122, 149, 154, 278, 293, 362, 440
DdeI	CTNAG	2 cut(s)	6, 150
DpnI	GATC	2 cut(s)	137, 351
DpnII	GATC	2 cut(s)	135, 349
EaeI	YGGCCR	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	249
FaeI	CATG	4 cut(s)	91, 208, 317, 425
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FatI	CATG	4 cut(s)	87, 204, 313, 421
FauNDI	CATATG	1 cut(s)	365
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	2 cut(s)	165, 230
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	4 cut(s)	91, 208, 317, 425
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	3 cut(s)	113, 242, 256
HpaII	CCGG	2 cut(s)	165, 230
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188III	TCNNGA	2 cut(s)	98, 499
Hpy8I	GTNNAC	1 cut(s)	419
HpyAV	CCTTC	1 cut(s)	34
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	3 cut(s)	201, 456, 465
HpyF3I	CTNAG	2 cut(s)	6, 150
Hsp92II	CATG	4 cut(s)	91, 208, 317, 425
HspAI	GCGC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	135, 349
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	8 cut(s)	12, 171, 178, 236, 243, 263, 294, 479
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	407
MaeIII	GTNAC	2 cut(s)	74, 334
MalI	GATC	2 cut(s)	137, 351
MboI	GATC	2 cut(s)	135, 349
MboII	GAAGA	2 cut(s)	133, 514
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	488
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	1 cut(s)	394
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	107
MnlI	CCTC	3 cut(s)	116, 198, 316
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	2 cut(s)	165, 230
MspR9I	CCNGG	2 cut(s)	231, 251
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	3 cut(s)	201, 456, 465
NciI	CCSGG	1 cut(s)	231
NdeI	CATATG	1 cut(s)	365
NdeII	GATC	2 cut(s)	135, 349
NlaIII	CATG	4 cut(s)	91, 208, 317, 425
NmeAIII	GCCGAG	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	74
NspI	RCATGY	1 cut(s)	208
PaqCI	CACCTGC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	242, 256
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	349
RseI	CAYNNNNRTG	1 cut(s)	143
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	2 cut(s)	135, 349
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	231, 251
SduI	GDGCHC	1 cut(s)	488
SetI	ASST	5 cut(s)	45, 108, 160, 295, 333
SfaNI	GCATC	1 cut(s)	361
SfcI	CTRYAG	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	394
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	2 cut(s)	229, 249
TasI	AATT	1 cut(s)	394
TfiI	GAWTC	2 cut(s)	242, 256
TscAI	CASTG	2 cut(s)	37, 457
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	75, 210
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	2 cut(s)	37, 457
XceI	RCATGY	1 cut(s)	208
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.