Rh4AG336700

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004080
Physical Location & Seq
Forward (+)
64569937 .. 64570584
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG336700.1

Sequence Viewer

Length: 444 bp
ATGGAGCAGCAGGGAGAGGAGAAGATGAAGAAGAAGGTGATGGTGGCAATTGATGAGAGCGAGCTTAGCCACTACGCGCTAGAATGGACCCTCGAAAATCTTGGCAACAACATTCATAATTCTGAGCTACTCGTCTTCACTGCACAGCCCACCACCATTGATTTTGGTTACACAAACAATGTTCTCGATCCATTTTGTTTTACTCCTGAGCTGGTAGCAGCTATACAAGAAAACTACAAGAAGGTGGCATTGGTTTTGCTGGATAAAGCTAAAGACATCTGCGCCAACCATGGGGTTGTTGCAGAGACAGTAACAGAGGTTGGTGATCCTAAAAAGGCAATATGTGAAGCGGTAGAAAAATTCAACATCGAGTTACTAGTACTAGGCAGTCATGGTCGAGGAACTGTACAAAGGTATTTCTTAAGTTTTGGGGATATTCTATAG

Protein Analysis

147

Amino Acids

16.4

Weight (kDa)

4.85

Isoelectric Point (pI)

32.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 10 - 141 8.9e-19 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 77
AciI CCGC 1 cut(s) 350
AclWI GGATC 2 cut(s) 182, 320
AcsI RAATTY 1 cut(s) 359
AfaI GTAC 2 cut(s) 381, 408
AfiI CCNNNNNNNGG 1 cut(s) 291
AflII CTTAAG 1 cut(s) 421
AgsI TTSAA 1 cut(s) 364
AhlI ACTAGT 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 5 cut(s) 64, 127, 211, 221, 269
AluI AGCT 5 cut(s) 64, 127, 211, 221, 269
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 2 cut(s) 182, 320
ApeKI GCWGC 2 cut(s) 7, 218
ApoI RAATTY 1 cut(s) 359
AspLEI GCGC 2 cut(s) 79, 284
AspS9I GGNCC 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 49, 335
AvaII GGWCC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 19, 230
BccI CCATC 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 299
BcuI ACTAGT 1 cut(s) 376
BfaI CTAG 3 cut(s) 80, 377, 383
BfmI CTRYAG 1 cut(s) 440
BfrI CTTAAG 1 cut(s) 421
BisI GCNGC 2 cut(s) 8, 219
BlpI GCTNAGC 1 cut(s) 65
BlsI GCNGC 2 cut(s) 9, 220
BmcAI AGTACT 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 207
Bpu1102I GCTNAGC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 114, 198
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 19, 230
BsgI GTGCAG 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 299
Bsp1407I TGTACA 1 cut(s) 406
Bsp143I GATC 2 cut(s) 187, 325
Bsp1720I GCTNAGC 1 cut(s) 65
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 1 cut(s) 350
BspCNI CTCAG 2 cut(s) 115, 199
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 89
BspPI GGATC 2 cut(s) 182, 320
BspTI CTTAAG 1 cut(s) 421
BsrGI TGTACA 1 cut(s) 406
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 2 cut(s) 187, 325
BssT1I CCWWGG 1 cut(s) 289
Bst4CI ACNGT 2 cut(s) 310, 406
BstAFI CTTAAG 1 cut(s) 421
BstAUI TGTACA 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 3 cut(s) 65, 123, 207
BstDSI CCRYGG 1 cut(s) 289
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 2 cut(s) 79, 284
BstKTI GATC 2 cut(s) 190, 328
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 2 cut(s) 187, 325
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 440
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 19, 230
BstV2I GAAGAC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 62
CfoI GCGC 2 cut(s) 79, 284
Cfr13I GGNCC 1 cut(s) 87
Csp6I GTAC 2 cut(s) 380, 407
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 2 cut(s) 290, 392
CviJI RGCY 7 cut(s) 64, 69, 127, 148, 211, 221, 269
CviKI_1 RGCY 7 cut(s) 64, 69, 127, 148, 211, 221, 269
CviQI GTAC 2 cut(s) 380, 407
DdeI CTNAG 3 cut(s) 65, 123, 207
DpnI GATC 2 cut(s) 189, 327
DpnII GATC 2 cut(s) 187, 325
Eco130I CCWWGG 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 2 cut(s) 293, 395
FaiI YATR 6 cut(s) 117, 224, 291, 343, 393, 442
FatI CATG 2 cut(s) 289, 391
Fnu4HI GCNGC 2 cut(s) 8, 219
Fsp4HI GCNGC 2 cut(s) 8, 219
FspBI CTAG 3 cut(s) 80, 377, 383
GlaI GCGC 2 cut(s) 78, 283
GluI GCNGC 2 cut(s) 8, 219
HhaI GCGC 2 cut(s) 79, 284
Hin1II CATG 2 cut(s) 293, 395
Hin6I GCGC 2 cut(s) 77, 282
HinP1I GCGC 2 cut(s) 77, 282
HphI GGTGA 2 cut(s) 49, 335
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 185, 206
HpyAV CCTTC 2 cut(s) 28, 235
HpyCH4III ACNGT 2 cut(s) 310, 406
HpyCH4V TGCA 2 cut(s) 143, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
HpyF3I CTNAG 3 cut(s) 65, 123, 207
Hsp92II CATG 2 cut(s) 293, 395
HspAI GCGC 2 cut(s) 77, 282
Kzo9I GATC 2 cut(s) 187, 325
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 3 cut(s) 197, 219, 245
Lsp1109I GCAGC 2 cut(s) 19, 230
MaeI CTAG 3 cut(s) 80, 377, 383
MaeIII GTNAC 3 cut(s) 167, 310, 372
MalI GATC 2 cut(s) 189, 327
MboI GATC 2 cut(s) 187, 325
MboII GAAGA 4 cut(s) 34, 40, 43, 127
MfeI CAATTG 1 cut(s) 48
MluCI AATT 3 cut(s) 48, 118, 359
MnlI CCTC 4 cut(s) 10, 101, 310, 392
MseI TTAA 1 cut(s) 422
MspCI CTTAAG 1 cut(s) 421
MunI CAATTG 1 cut(s) 48
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 66
NcoI CCATGG 1 cut(s) 289
NdeII GATC 2 cut(s) 187, 325
NlaIII CATG 2 cut(s) 293, 395
NlaIV GGNNCC 1 cut(s) 89
PkrI GCNGC 2 cut(s) 9, 220
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 87
RsaI GTAC 2 cut(s) 381, 408
RsaNI GTAC 2 cut(s) 380, 407
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 2 cut(s) 8, 219
Sau3AI GATC 2 cut(s) 187, 325
Sau96I GGNCC 1 cut(s) 87
ScaI AGTACT 1 cut(s) 381
SetI ASST 9 cut(s) 39, 66, 129, 213, 223, 246, 271, 321, 416
SfcI CTRYAG 1 cut(s) 440
SinI GGWCC 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
SpeI ACTAGT 1 cut(s) 376
Sse9I AATT 3 cut(s) 48, 118, 359
SsiI CCGC 1 cut(s) 350
SspMI CTAG 3 cut(s) 80, 377, 383
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 2 cut(s) 310, 406
TaqI TCGA 4 cut(s) 93, 186, 369, 397
TasI AATT 3 cut(s) 48, 118, 359
TatI WGTACW 2 cut(s) 379, 406
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 1 cut(s) 145
TseI GCWGC 2 cut(s) 7, 218
TspDTI ATGAA 2 cut(s) 41, 104
TspRI CASTG 1 cut(s) 145
Vha464I CTTAAG 1 cut(s) 421
VpaK11BI GGWCC 1 cut(s) 87
XapI RAATTY 1 cut(s) 359
XspI CTAG 3 cut(s) 80, 377, 383
ZrmI AGTACT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.