Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004080

Physical Location & Seq

Genomic Coordinates Forward (+)

2731920 .. 2733038

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1040100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAGGAGCAGGGAAAGAATGAGGAGAGGAAGAAGGTGATGGTGGCGATCGACGAGAGCGAGTTTAGCCTATACGCCTTCAATTGGGCGCTCGAAAATCTGCGCGAGACCATCCAGAGTTCGCAGCTAGTCGTCTTCACTGCACAGCCCATTGACTTCGCTTCCACTTATGCTGCCAGTTACGGAGCTGCCCCTGCTCAGTTGGTAACATCTTTGCTTGAAAACCACAAGAAGGTGGCGCTGGCTTTGTTGGAGAGAGCTAAAGAAATTTGTGCCAAACATGGGATTGTTCCAGAGACAGTGACAGAGGTAGGCGATCCGAAGGTGGTGATATGTGAAGCAGTCGAGAAACACAACATCCAGTTGCTTGTGTTAGGCAGCCACGGTCGCGGAGGTATCCAAAGGGCTTTTTTGGGAAGCGTAAGCAATTACTGCGTACATAACGCTAAGTGTCCTGTTCTTGTTGTGAGGAAACAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

161

Amino Acids

17.59

Weight (kDa)

6.52

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	10 - 157	2.3e-34	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68300
fragaria_vesca	FvH4_4g27170 FvH4_4g27170 FvH4_4g27180
malus_domestica	MD13G1040100.v1.1 MD13G1040200.v1.1 MD16G1041100.v1.1
prunus_persica	Prupe.1G312900_v2.0.a1 Prupe.1G313000_v2.0.a1
pyrus_communis	pycom13g03450 pycom13g03460
rosa_chinensis	RchiOBHm_Chr4g0434961 RchiOBHm_Chr4g0434971
rosa_laevigata	RLG00000006632 RLG00000006633
rosa_multiflora	Rmu_sc0000400.1_g000036 Rmu_sc0023421.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376140 Rroxscaffold_5G00376150
rosa_rugosa	Rorug04G0281300 Rorug04G0281400 Rorug04G0281500 Rorug04G0281500
rosa_samantha	Rh4AG336700 Rh4AG336800 Rh4BG344600 Rh4BG344700 Rh4CG359300 Rh4CG359500 Rh4DG339100 Rh4DG339200
rosa_wichuraiana	Rw4G029350 Rw4G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	105, 390
AciI	CCGC	1 cut(s)	390
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	267
AfaI	GTAC	1 cut(s)	438
AfiI	CCNNNNNNNGG	3 cut(s)	84, 232, 282
AgsI	TTSAA	2 cut(s)	82, 221
AluBI	AGCT	3 cut(s)	127, 188, 260
AluI	AGCT	3 cut(s)	127, 188, 260
Alw26I	GTCTC	2 cut(s)	101, 290
AlwI	GGATC	1 cut(s)	311
ApeKI	GCWGC	4 cut(s)	124, 173, 188, 378
ApoI	RAATTY	1 cut(s)	267
AspLEI	GCGC	3 cut(s)	91, 105, 241
AsuHPI	GGTGA	2 cut(s)	49, 340
BbsI	GAAGAC	1 cut(s)	127
BbvI	GCAGC	4 cut(s)	136, 160, 175, 390
BccI	CCATC	2 cut(s)	34, 119
BciVI	GTATCC	1 cut(s)	407
BcoDI	GTCTC	2 cut(s)	101, 290
BfaI	CTAG	1 cut(s)	128
BfoI	RGCGCY	2 cut(s)	92, 242
BfuI	GTATCC	1 cut(s)	407
BisI	GCNGC	4 cut(s)	125, 174, 189, 379
BlsI	GCNGC	4 cut(s)	126, 175, 190, 380
BpiI	GAAGAC	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 232, 282
Bse1I	ACTGG	2 cut(s)	177, 361
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	2 cut(s)	111, 357
BseLI	CCNNNNNNNGG	3 cut(s)	84, 232, 282
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	2 cut(s)	177, 361
BseRI	GAGGAG	2 cut(s)	20, 38
BseXI	GCAGC	4 cut(s)	136, 160, 175, 390
BsgI	GTGCAG	1 cut(s)	126
Bsh1236I	CGCG	2 cut(s)	105, 390
Bsh1285I	CGRYCG	2 cut(s)	51, 388
BsiEI	CGRYCG	2 cut(s)	51, 388
BslI	CCNNNNNNNGG	3 cut(s)	84, 232, 282
BsmAI	GTCTC	2 cut(s)	101, 290
Bso31I	GGTCTC	1 cut(s)	101
Bsp143I	GATC	2 cut(s)	48, 316
BspACI	CCGC	1 cut(s)	390
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	2 cut(s)	105, 390
BspPI	GGATC	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	177, 361
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	2 cut(s)	48, 316
Bst4CI	ACNGT	2 cut(s)	301, 386
BstAPI	GCANNNNNTGC	1 cut(s)	432
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	198, 447
BstDSI	CCRYGG	1 cut(s)	382
BstF5I	GGATG	2 cut(s)	111, 357
BstFNI	CGCG	2 cut(s)	105, 390
BstH2I	RGCGCY	2 cut(s)	92, 242
BstHHI	GCGC	3 cut(s)	91, 105, 241
BstKTI	GATC	2 cut(s)	51, 319
BstMAI	GTCTC	2 cut(s)	101, 290
BstMBI	GATC	2 cut(s)	48, 316
BstMCI	CGRYCG	2 cut(s)	51, 388
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 194, 387, 432
BstUI	CGCG	2 cut(s)	105, 390
BstV1I	GCAGC	4 cut(s)	136, 160, 175, 390
BstV2I	GAAGAC	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	407
BtgI	CCRYGG	1 cut(s)	382
BtsCI	GGATG	2 cut(s)	111, 357
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 306
Cac8I	GCNNGC	1 cut(s)	243
CfoI	GCGC	3 cut(s)	91, 105, 241
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	8 cut(s)	69, 127, 148, 188, 245, 260, 381, 407
CviKI_1	RGCY	8 cut(s)	69, 127, 148, 188, 245, 260, 381, 407
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	2 cut(s)	198, 447
DpnI	GATC	2 cut(s)	50, 318
DpnII	GATC	2 cut(s)	48, 316
Eco31I	GGTCTC	1 cut(s)	101
FaeI	CATG	1 cut(s)	284
FaiI	YATR	5 cut(s)	73, 171, 282, 334, 441
FatI	CATG	1 cut(s)	280
Fnu4HI	GCNGC	4 cut(s)	125, 174, 189, 379
FokI	GGATG	2 cut(s)	98, 344
Fsp4HI	GCNGC	4 cut(s)	125, 174, 189, 379
FspBI	CTAG	1 cut(s)	128
GlaI	GCGC	3 cut(s)	90, 104, 240
GluI	GCNGC	4 cut(s)	125, 174, 189, 379
HaeII	RGCGCY	2 cut(s)	92, 242
HhaI	GCGC	3 cut(s)	91, 105, 241
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	3 cut(s)	89, 103, 239
HinP1I	GCGC	3 cut(s)	89, 103, 239
HphI	GGTGA	2 cut(s)	49, 340
Hpy188I	TCNGA	1 cut(s)	321
Hpy188III	TCNNGA	3 cut(s)	115, 293, 346
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	28, 88, 226, 316
HpyCH4III	ACNGT	2 cut(s)	301, 386
HpyCH4V	TGCA	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 194, 387, 432
HpyF3I	CTNAG	2 cut(s)	198, 447
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	3 cut(s)	89, 103, 239
Kzo9I	GATC	2 cut(s)	48, 316
LmnI	GCTCC	2 cut(s)	7, 185
LpnPI	CCDG	7 cut(s)	128, 190, 207, 227, 306, 374, 468
Lsp1109I	GCAGC	4 cut(s)	136, 160, 175, 390
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	3 cut(s)	179, 205, 301
MalI	GATC	2 cut(s)	50, 318
MboI	GATC	2 cut(s)	48, 316
MboII	GAAGA	2 cut(s)	43, 127
MfeI	CAATTG	1 cut(s)	82
MluCI	AATT	3 cut(s)	82, 267, 427
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	5 cut(s)	16, 21, 301, 386, 462
MunI	CAATTG	1 cut(s)	82
MvnI	CGCG	2 cut(s)	105, 390
MwoI	GCNNNNNNNGC	4 cut(s)	66, 194, 387, 432
NdeII	GATC	2 cut(s)	48, 316
NlaIII	CATG	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PkrI	GCNGC	4 cut(s)	126, 175, 190, 380
Ple19I	CGATCG	1 cut(s)	51
PvuI	CGATCG	1 cut(s)	51
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
SatI	GCNGC	4 cut(s)	125, 174, 189, 379
Sau3AI	GATC	2 cut(s)	48, 316
SetI	ASST	8 cut(s)	39, 129, 190, 237, 262, 312, 327, 397
Sse9I	AATT	3 cut(s)	82, 267, 427
SsiI	CCGC	1 cut(s)	390
SspMI	CTAG	1 cut(s)	128
TaaI	ACNGT	2 cut(s)	301, 386
TaqI	TCGA	3 cut(s)	51, 93, 345
TasI	AATT	3 cut(s)	82, 267, 427
TscAI	CASTG	2 cut(s)	145, 306
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	4 cut(s)	124, 173, 188, 378
Tsp45I	GTSAC	1 cut(s)	301
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	2 cut(s)	145, 306
XapI	RAATTY	1 cut(s)	267
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.