Rroxscaffold_5G00376140

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004080
Physical Location & Seq
Forward (+)
56881027 .. 56882001
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00376140.1

Sequence Viewer

Length: 456 bp
ATGGAGCAGCAGGGAGAGGAGAAGATGAAGAAGAAGGTGATGGTCGCAATTGATGACAGCGAGCTTAGCCACTACGCGCTCGAATGGACCCTCGAAAATCTTGGCAACACCATTCATAATTCTGAGCTACTCGTCTTCACTGCACAGCCCAACACCATTGATTTTGCTCCTGAGCTGGTAGCAGCTATACAAGAAAACTACAAGAAGGTGGCATTGGTTTTGCTGCATAAAGCTAAAGACATCTGCGCCAACCATGGGATTGTTGCAGAGACAGTAACAGAGGTTGGTGATCCTAAAAAGGCAATATGTGAAGCGGTAGAAAAATTCAACATCGAGTTACTAGTACTAGGCAGTCATGGTCGAGGAACTGTACAAAGGGCTTTCATGGGAAGTGTCAGCAATTACTGCATTCATAATGCCAGATGTACTGTTCTTGTTGTGAGGAAACCAATTTGA

Protein Analysis

151

Amino Acids

16.73

Weight (kDa)

6.06

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 10 - 148 1.5e-31 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 77
AciI CCGC 1 cut(s) 314
AclWI GGATC 1 cut(s) 284
AcsI RAATTY 1 cut(s) 323
AfaI GTAC 3 cut(s) 345, 372, 427
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 1 cut(s) 328
AhlI ACTAGT 1 cut(s) 340
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 5 cut(s) 64, 127, 175, 185, 233
AluI AGCT 5 cut(s) 64, 127, 175, 185, 233
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 1 cut(s) 284
ApeKI GCWGC 3 cut(s) 7, 182, 223
ApoI RAATTY 1 cut(s) 323
AspLEI GCGC 2 cut(s) 79, 248
AspS9I GGNCC 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 49, 299
AvaII GGWCC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 127
BbvI GCAGC 3 cut(s) 19, 194, 210
BccI CCATC 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 263
BcuI ACTAGT 1 cut(s) 340
BfaI CTAG 2 cut(s) 341, 347
BisI GCNGC 3 cut(s) 8, 183, 224
BlpI GCTNAGC 1 cut(s) 65
BlsI GCNGC 3 cut(s) 9, 184, 225
BmcAI AGTACT 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 171
Bpu1102I GCTNAGC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 114, 162
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 3 cut(s) 19, 194, 210
BsgI GTGCAG 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 1 cut(s) 263
BsmI GAATGC 1 cut(s) 408
Bsp1407I TGTACA 1 cut(s) 370
Bsp143I GATC 1 cut(s) 289
Bsp1720I GCTNAGC 1 cut(s) 65
Bsp19I CCATGG 1 cut(s) 253
BspACI CCGC 1 cut(s) 314
BspCNI CTCAG 2 cut(s) 115, 163
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 89
BspPI GGATC 1 cut(s) 284
BsrGI TGTACA 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 253
Bst4CI ACNGT 3 cut(s) 274, 370, 430
BstAPI GCANNNNNTGC 1 cut(s) 405
BstAUI TGTACA 1 cut(s) 370
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 3 cut(s) 65, 123, 171
BstDSI CCRYGG 1 cut(s) 253
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 2 cut(s) 79, 248
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 2 cut(s) 66, 405
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 3 cut(s) 19, 194, 210
BstV2I GAAGAC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 62
CfoI GCGC 2 cut(s) 79, 248
Cfr13I GGNCC 1 cut(s) 87
Csp6I GTAC 3 cut(s) 344, 371, 426
CviAII CATG 3 cut(s) 254, 356, 385
CviJI RGCY 8 cut(s) 64, 69, 127, 148, 175, 185, 233, 380
CviKI_1 RGCY 8 cut(s) 64, 69, 127, 148, 175, 185, 233, 380
CviQI GTAC 3 cut(s) 344, 371, 426
DdeI CTNAG 3 cut(s) 65, 123, 171
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 3 cut(s) 257, 359, 388
FaiI YATR 8 cut(s) 117, 188, 228, 255, 307, 357, 386, 414
FatI CATG 3 cut(s) 253, 355, 384
Fnu4HI GCNGC 3 cut(s) 8, 183, 224
Fsp4HI GCNGC 3 cut(s) 8, 183, 224
FspBI CTAG 2 cut(s) 341, 347
GlaI GCGC 2 cut(s) 78, 247
GluI GCNGC 3 cut(s) 8, 183, 224
HhaI GCGC 2 cut(s) 79, 248
Hin1II CATG 3 cut(s) 257, 359, 388
Hin6I GCGC 2 cut(s) 77, 246
HinP1I GCGC 2 cut(s) 77, 246
HphI GGTGA 2 cut(s) 49, 299
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 170
HpyAV CCTTC 2 cut(s) 28, 199
HpyCH4III ACNGT 3 cut(s) 274, 370, 430
HpyCH4V TGCA 4 cut(s) 143, 226, 266, 408
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 405
HpyF3I CTNAG 3 cut(s) 65, 123, 171
Hsp92II CATG 3 cut(s) 257, 359, 388
HspAI GCGC 2 cut(s) 77, 246
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 2 cut(s) 4, 172
LpnPI CCDG 3 cut(s) 161, 183, 433
Lsp1109I GCAGC 3 cut(s) 19, 194, 210
MaeI CTAG 2 cut(s) 341, 347
MaeIII GTNAC 2 cut(s) 274, 336
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 4 cut(s) 34, 40, 43, 127
MfeI CAATTG 1 cut(s) 48
MluCI AATT 5 cut(s) 48, 118, 323, 400, 450
MnlI CCTC 5 cut(s) 10, 101, 274, 356, 435
MunI CAATTG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 408
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 66, 405
NcoI CCATGG 1 cut(s) 253
NdeII GATC 1 cut(s) 289
NlaIII CATG 3 cut(s) 257, 359, 388
NlaIV GGNNCC 1 cut(s) 89
PctI GAATGC 1 cut(s) 408
PkrI GCNGC 3 cut(s) 9, 184, 225
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 87
RsaI GTAC 3 cut(s) 345, 372, 427
RsaNI GTAC 3 cut(s) 344, 371, 426
SatI GCNGC 3 cut(s) 8, 183, 224
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 1 cut(s) 87
ScaI AGTACT 1 cut(s) 345
SetI ASST 8 cut(s) 39, 66, 129, 177, 187, 210, 235, 285
SinI GGWCC 1 cut(s) 87
SpeI ACTAGT 1 cut(s) 340
Sse9I AATT 5 cut(s) 48, 118, 323, 400, 450
SsiI CCGC 1 cut(s) 314
SspMI CTAG 2 cut(s) 341, 347
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 3 cut(s) 274, 370, 430
TaqI TCGA 4 cut(s) 81, 93, 333, 361
TasI AATT 5 cut(s) 48, 118, 323, 400, 450
TatI WGTACW 3 cut(s) 343, 370, 425
TscAI CASTG 1 cut(s) 145
TseI GCWGC 3 cut(s) 7, 182, 223
TspDTI ATGAA 4 cut(s) 41, 104, 373, 401
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 87
XapI RAATTY 1 cut(s) 323
XspI CTAG 2 cut(s) 341, 347
ZrmI AGTACT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.