Rh4DG339100

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004080
Physical Location & Seq
Forward (+)
56156386 .. 56157711
1326 bp
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UTR
Exon/CDS
Intron
Rh4DG339100.1

Sequence Viewer

Length: 456 bp
ATGGAGCAGCAGGGAGAGGAGAAGATGAAGAAGAAGGTGATGGTGGCAATTGATGAGAGCGAGCTTAGCCACTACGCGCTAGAATGGACCCTCGAAAATCTTGGCAACAACATTCATAATTCTGAGCTACTCGTCTTCACTGCACAGCCCACCACCATTGATTTTGCTCCTGAGCTGGTAGCAGCTATACAAGAAAACTACAAGAAGGTGGCATTGGTTTTGCTGGATAAAGCTAAAGACATCTGCGCCAACCATGGGGTTGTTGCAGAGACAGTAACAGAGGTTGGTGATCCTAAAAAGGCAATATGTGAAGCGGTAGAAAAATTCAACATCGAGTTACTAGTACTAGGCAGTCATGGTCGAGGAACTGTACAAAGGGCTTTCCTGGGAAGTGTCAGCAATTACTGCGTTCATAATGCCGGATGTACTGTTCTTGTTGTGAGGAAACCAATTTGA

Protein Analysis

151

Amino Acids

16.58

Weight (kDa)

5.53

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 10 - 148 1.3e-31 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 77
AciI CCGC 1 cut(s) 314
AclWI GGATC 1 cut(s) 284
AcsI RAATTY 1 cut(s) 323
AfaI GTAC 3 cut(s) 345, 372, 427
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 1 cut(s) 328
AhlI ACTAGT 1 cut(s) 340
AjnI CCWGG 1 cut(s) 384
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AloI GAACNNNNNNTCC 2 cut(s) 414, 446
AluBI AGCT 5 cut(s) 64, 127, 175, 185, 233
AluI AGCT 5 cut(s) 64, 127, 175, 185, 233
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 1 cut(s) 284
ApeKI GCWGC 2 cut(s) 7, 182
ApoI RAATTY 1 cut(s) 323
AspLEI GCGC 2 cut(s) 79, 248
AspS9I GGNCC 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 49, 299
AvaII GGWCC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 19, 194
BccI CCATC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 386
BcoDI GTCTC 1 cut(s) 263
BcuI ACTAGT 1 cut(s) 340
BfaI CTAG 3 cut(s) 80, 341, 347
BisI GCNGC 2 cut(s) 8, 183
BlpI GCTNAGC 1 cut(s) 65
BlsI GCNGC 2 cut(s) 9, 184
BmcAI AGTACT 1 cut(s) 345
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 171
Bpu1102I GCTNAGC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 253, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 2 cut(s) 253, 385
BseGI GGATG 1 cut(s) 428
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 114, 162
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 19, 194
BsgI GTGCAG 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 420
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 1 cut(s) 263
Bsp1407I TGTACA 1 cut(s) 370
Bsp143I GATC 1 cut(s) 289
Bsp1720I GCTNAGC 1 cut(s) 65
Bsp19I CCATGG 1 cut(s) 253
BspACI CCGC 1 cut(s) 314
BspCNI CTCAG 2 cut(s) 115, 163
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 89
BspPI GGATC 1 cut(s) 284
BsrGI TGTACA 1 cut(s) 370
BssECI CCNNGG 2 cut(s) 253, 385
BssMI GATC 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 3 cut(s) 274, 370, 430
BstAPI GCANNNNNTGC 1 cut(s) 405
BstAUI TGTACA 1 cut(s) 370
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 3 cut(s) 65, 123, 171
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 428
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 2 cut(s) 79, 248
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 2 cut(s) 66, 405
BstNI CCWGG 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 384
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 19, 194
BstV2I GAAGAC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 1 cut(s) 428
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 62
CfoI GCGC 2 cut(s) 79, 248
Cfr13I GGNCC 1 cut(s) 87
Csp6I GTAC 3 cut(s) 344, 371, 426
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 2 cut(s) 254, 356
CviJI RGCY 8 cut(s) 64, 69, 127, 148, 175, 185, 233, 380
CviKI_1 RGCY 8 cut(s) 64, 69, 127, 148, 175, 185, 233, 380
CviQI GTAC 3 cut(s) 344, 371, 426
DdeI CTNAG 3 cut(s) 65, 123, 171
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 2 cut(s) 257, 359
FaiI YATR 6 cut(s) 117, 188, 255, 307, 357, 414
FatI CATG 2 cut(s) 253, 355
Fnu4HI GCNGC 2 cut(s) 8, 183
FokI GGATG 1 cut(s) 435
Fsp4HI GCNGC 2 cut(s) 8, 183
FspBI CTAG 3 cut(s) 80, 341, 347
GlaI GCGC 2 cut(s) 78, 247
GluI GCNGC 2 cut(s) 8, 183
HapII CCGG 1 cut(s) 420
HhaI GCGC 2 cut(s) 79, 248
Hin1II CATG 2 cut(s) 257, 359
Hin6I GCGC 2 cut(s) 77, 246
HinP1I GCGC 2 cut(s) 77, 246
HpaII CCGG 1 cut(s) 420
HphI GGTGA 2 cut(s) 49, 299
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 170
HpyAV CCTTC 2 cut(s) 28, 199
HpyCH4III ACNGT 3 cut(s) 274, 370, 430
HpyCH4V TGCA 2 cut(s) 143, 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 405
HpyF3I CTNAG 3 cut(s) 65, 123, 171
Hsp92II CATG 2 cut(s) 257, 359
HspAI GCGC 2 cut(s) 77, 246
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 2 cut(s) 4, 172
LpnPI CCDG 6 cut(s) 161, 183, 209, 371, 398, 433
Lsp1109I GCAGC 2 cut(s) 19, 194
MaeI CTAG 3 cut(s) 80, 341, 347
MaeIII GTNAC 2 cut(s) 274, 336
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 4 cut(s) 34, 40, 43, 127
MfeI CAATTG 1 cut(s) 48
MluCI AATT 5 cut(s) 48, 118, 323, 400, 450
MnlI CCTC 5 cut(s) 10, 101, 274, 356, 435
MspI CCGG 1 cut(s) 420
MspR9I CCNGG 1 cut(s) 386
MunI CAATTG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 386
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 66, 405
NcoI CCATGG 1 cut(s) 253
NdeII GATC 1 cut(s) 289
NlaIII CATG 2 cut(s) 257, 359
NlaIV GGNNCC 1 cut(s) 89
PkrI GCNGC 2 cut(s) 9, 184
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 87
RsaI GTAC 3 cut(s) 345, 372, 427
RsaNI GTAC 3 cut(s) 344, 371, 426
SatI GCNGC 2 cut(s) 8, 183
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 1 cut(s) 87
ScaI AGTACT 1 cut(s) 345
ScrFI CCNGG 1 cut(s) 386
SetI ASST 8 cut(s) 39, 66, 129, 177, 187, 210, 235, 285
SinI GGWCC 1 cut(s) 87
SpeI ACTAGT 1 cut(s) 340
Sse9I AATT 5 cut(s) 48, 118, 323, 400, 450
SsiI CCGC 1 cut(s) 314
SspMI CTAG 3 cut(s) 80, 341, 347
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 3 cut(s) 274, 370, 430
TaqI TCGA 3 cut(s) 93, 333, 361
TasI AATT 5 cut(s) 48, 118, 323, 400, 450
TatI WGTACW 3 cut(s) 343, 370, 425
TscAI CASTG 1 cut(s) 145
TseI GCWGC 2 cut(s) 7, 182
TspDTI ATGAA 3 cut(s) 41, 104, 401
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 87
XapI RAATTY 1 cut(s) 323
XspI CTAG 3 cut(s) 80, 341, 347
ZrmI AGTACT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.