Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004724

Physical Location & Seq

Genomic Coordinates Reverse (-)

25777851 .. 25779249

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAGACTGCGATTTGTGGGAGATTAGCTCTCGCACCATCCTCTCTCTTCAATTCTAAATCAGGGGACAAACATTTAGTCTCAAAAGGACCATGTGTGAATCGTAGCATTCTCATGACCTTGTCTACATCTGCTGCATTGGGTAAAGGAGGTGGTGTCTTAGACAAACCAATTATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAGGAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAACTTCAACAAGAGGGAATATGTGGTTCAGGTGTTGATGAAGGTAATACCCGGCATGACTGTAGACAACGCGGTTAACATTATGCAAGAAGCTCATATCAACGGTTTGGCAGTTGTGATTGTTTGTGCTCAGGCTGATGCAGAGCAACACTGTATGCAGCTGCGCGGTAACGGCCTTCTCAGTTCTGTTGAACCTGATGGTGGAGGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010604 GO:0019222 GO:0030162 GO:0030674 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032268 GO:0032270 GO:0042176 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060090 GO:0060255 GO:0065007 GO:0080090 GO:1903050 GO:1903052 GO:1903362 GO:1903364

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ClpS

Protein Analysis

159

Amino Acids

17.0

Weight (kDa)

8.63

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ClpS	PF02617	79 - 145	2.4e-18	ATP-dependent Clp protease adaptor protein ClpS

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68660 AT1G68660
fragaria_vesca	FvH4_5g12540
malus_domestica	MD13G1045100.v1.1 MD14G1223300.v1.1 MD16G1046400.v1.1
prunus_persica	Prupe.1G306800_v2.0.a1 Prupe.1G306800_v2.0.a1 Prupe.1G306800_v2.0.a1 Prupe.5G218600_v2.0.a1
pyrus_communis	pycom06g18970
rosa_chinensis	RchiOBHm_Chr4g0435651 RchiOBHm_Chr7g0184811
rosa_laevigata	RLG00000004952 RLG00000006570 RLG00000006573
rosa_multiflora	Rmu_sc0000051.1_g000009 Rmu_ssc0000289.1_g000015
rosa_roxburghii	Rroxscaffold_3G00269360 Rroxscaffold_5G00376870
rosa_rugosa	Rorug06G0465100
rosa_samantha	Rh4AG342800 Rh4BG351200 Rh4CG365800 Rh4DG345500 Rh7AG077800 Rh7BG069500 Rh7CG070300 Rh7DG069700
rosa_wichuraiana	Rw4G029920 Rw7G005760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	125, 330
AccII	CGCG	2 cut(s)	338, 432
AciI	CCGC	2 cut(s)	338, 432
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	3 cut(s)	52, 274, 458
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	4 cut(s)	29, 236, 359, 427
AluI	AGCT	4 cut(s)	29, 236, 359, 427
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	85
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	4 cut(s)	134, 424, 427, 474
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	4 cut(s)	121, 414, 436, 461
BccI	CCATC	2 cut(s)	46, 458
BceAI	ACGGC	1 cut(s)	454
BciT130I	CCWGG	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	85
BfmI	CTRYAG	1 cut(s)	327
BisI	GCNGC	4 cut(s)	135, 425, 428, 475
BlsI	GCNGC	4 cut(s)	136, 426, 429, 476
Bme1390I	CCNGG	2 cut(s)	192, 318
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmrFI	CCNGG	2 cut(s)	192, 318
BmsI	GCATC	1 cut(s)	394
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
Bpu10I	CCTNAGC	1 cut(s)	396
BpuMI	CCSGG	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
BseBI	CCWGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	2 cut(s)	410, 460
BseXI	GCAGC	4 cut(s)	121, 414, 436, 461
Bsh1236I	CGCG	2 cut(s)	338, 432
BshFI	GGCC	1 cut(s)	441
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	397
BspACI	CCGC	2 cut(s)	338, 432
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	2 cut(s)	409, 459
BspFNI	CGCG	2 cut(s)	338, 432
BspHI	TCATGA	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	3 cut(s)	328, 371, 419
Bst6I	CTCTTC	1 cut(s)	53
BstDEI	CTNAG	3 cut(s)	160, 396, 446
BstF5I	GGATG	1 cut(s)	38
BstFNI	CGCG	2 cut(s)	338, 432
BstHHI	GCGC	1 cut(s)	432
BstMAI	GTCTC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	438
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	2 cut(s)	190, 316
BstSFI	CTRYAG	1 cut(s)	327
BstUI	CGCG	2 cut(s)	338, 432
BstV1I	GCAGC	4 cut(s)	121, 414, 436, 461
BsuRI	GGCC	1 cut(s)	441
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	415
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	3 cut(s)	93, 115, 322
CviJI	RGCY	7 cut(s)	29, 236, 359, 401, 427, 441, 474
CviKI_1	RGCY	7 cut(s)	29, 236, 359, 401, 427, 441, 474
DdeI	CTNAG	3 cut(s)	160, 396, 446
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	190
FaeI	CATG	3 cut(s)	96, 118, 325
FaiI	YATR	8 cut(s)	94, 116, 176, 288, 323, 350, 363, 422
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	92, 114, 321
FblI	GTMKAC	2 cut(s)	125, 330
Fnu4HI	GCNGC	4 cut(s)	135, 425, 428, 475
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	4 cut(s)	135, 425, 428, 475
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	4 cut(s)	135, 425, 428, 475
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	3 cut(s)	96, 118, 325
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	2 cut(s)	100, 200
HpaI	GTTAAC	1 cut(s)	343
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	3 cut(s)	126, 331, 343
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	2 cut(s)	115, 197
Hpy8I	GTNNAC	3 cut(s)	126, 331, 343
HpyAV	CCTTC	2 cut(s)	301, 452
HpyCH4III	ACNGT	3 cut(s)	328, 371, 419
HpyCH4V	TGCA	4 cut(s)	137, 352, 407, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	438
HpyF3I	CTNAG	3 cut(s)	160, 396, 446
Hsp92II	CATG	3 cut(s)	96, 118, 325
HspAI	GCGC	1 cut(s)	430
KspAI	GTTAAC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	8 cut(s)	48, 177, 204, 232, 281, 331, 383, 474
Lsp1109I	GCAGC	4 cut(s)	121, 414, 436, 461
LweI	GCATC	1 cut(s)	394
MaeIII	GTNAC	1 cut(s)	434
MboII	GAAGA	2 cut(s)	40, 241
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	2 cut(s)	52, 171
MnlI	CCTC	4 cut(s)	52, 143, 273, 464
MseI	TTAA	2 cut(s)	215, 342
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	427
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	2 cut(s)	192, 318
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	192
MvnI	CGCG	2 cut(s)	338, 432
MwoI	GCNNNNNNNGC	1 cut(s)	438
NciI	CCSGG	1 cut(s)	318
NlaIII	CATG	3 cut(s)	96, 118, 325
PagI	TCATGA	1 cut(s)	114
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	100, 200
PflFI	GACNNNGTC	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	136, 426, 429, 476
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	89
PsyI	GACNNNGTC	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	427
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	215, 342
SatI	GCNGC	4 cut(s)	135, 425, 428, 475
Sau96I	GGNCC	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	192, 318
SduI	GDGCHC	1 cut(s)	397
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	2 cut(s)	52, 171
SsiI	CCGC	2 cut(s)	338, 432
StyD4I	CCNGG	2 cut(s)	190, 316
TaaI	ACNGT	3 cut(s)	328, 371, 419
TasI	AATT	2 cut(s)	52, 171
TfiI	GAWTC	2 cut(s)	100, 200
Tru1I	TTAA	2 cut(s)	215, 342
Tru9I	TTAA	2 cut(s)	215, 342
TscAI	CASTG	1 cut(s)	422
TseI	GCWGC	4 cut(s)	134, 424, 427, 474
TspDTI	ATGAA	1 cut(s)	320
TspRI	CASTG	1 cut(s)	422
Tth111I	GACNNNGTC	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	89
XmiI	GTMKAC	2 cut(s)	125, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.