Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004724

Physical Location & Seq

Genomic Coordinates Forward (+)

22525935 .. 22528053

Gene Structure 2119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18970.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCTGCCATCTGCGGTCGAGTCCCTCTTTCGACAAACCATGGATTGAATCTCACCAAATCAGGTGATAAACATTATTTTCATAGACAAAGTCCAAATCGGAGCATCTTGATGACAACATCAAGCACCAGGCTTGGCACAGGTGGTGGGGTGTTGGACAAGCCAACCATAGAGAAAACAAATCCTAGTCGTGACTCAGAGTTTGACGTGAGGAAATCAAGGAAAATGTCTCCACCGTACCGAGTGATGCTGCACAATGACAACTATAACAAGAGGGAGTACGTTGTGCAAGTTCTGATGAAGGTCATCCCGGGAATGACGGTTGACATTGCGGTGAACGTTATGCAGGAGGCACATCACAACGGCCTGGCCGTCGTAATTGTGTGCGCTCAGGTGGATGCAGAAGATCACTGCATGCAGCTCCGAGGCAACGGTCTTCTAAGCTCCGTTGAGCCCGCCGGTGATGGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ClpS

Protein Analysis

158

Amino Acids

17.23

Weight (kDa)

8.73

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68660 AT1G68660
fragaria_vesca	FvH4_5g12540
malus_domestica	MD13G1045100.v1.1 MD14G1223300.v1.1 MD16G1046400.v1.1
prunus_persica	Prupe.1G306800_v2.0.a1 Prupe.1G306800_v2.0.a1 Prupe.1G306800_v2.0.a1 Prupe.5G218600_v2.0.a1
pyrus_communis	pycom06g18970
rosa_chinensis	RchiOBHm_Chr4g0435651 RchiOBHm_Chr7g0184811
rosa_laevigata	RLG00000004952 RLG00000006570 RLG00000006573
rosa_multiflora	Rmu_sc0000051.1_g000009 Rmu_ssc0000289.1_g000015
rosa_roxburghii	Rroxscaffold_3G00269360 Rroxscaffold_5G00376870
rosa_rugosa	Rorug06G0465100
rosa_samantha	Rh4AG342800 Rh4BG351200 Rh4CG365800 Rh4DG345500 Rh7AG077800 Rh7BG069500 Rh7CG070300 Rh7DG069700
rosa_wichuraiana	Rw4G029920 Rw7G005760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	15, 332, 456
AclI	AACGTT	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	369
AfaI	GTAC	2 cut(s)	239, 281
AgsI	TTSAA	1 cut(s)	49
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	128, 366
AluBI	AGCT	2 cut(s)	421, 444
AluI	AGCT	2 cut(s)	421, 444
Alw26I	GTCTC	1 cut(s)	234
Ama87I	CYCGRG	1 cut(s)	310
AoxI	GGCC	2 cut(s)	364, 369
ApeKI	GCWGC	3 cut(s)	5, 250, 418
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AspLEI	GCGC	1 cut(s)	389
AsuC2I	CCSGG	2 cut(s)	311, 312
AsuHPI	GGTGA	4 cut(s)	46, 77, 346, 473
AvaI	CYCGRG	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	428
BbvI	GCAGC	2 cut(s)	237, 430
BccI	CCATC	2 cut(s)	17, 458
BceAI	ACGGC	2 cut(s)	356, 379
BciT130I	CCWGG	2 cut(s)	130, 368
BcnI	CCSGG	2 cut(s)	311, 312
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	186
BisI	GCNGC	3 cut(s)	6, 251, 419
BlsI	GCNGC	3 cut(s)	7, 252, 420
Bme1390I	CCNGG	4 cut(s)	130, 311, 312, 368
BmeT110I	CYCGRG	1 cut(s)	310
BmgBI	CACGTC	1 cut(s)	208
BmrFI	CCNGG	4 cut(s)	130, 311, 312, 368
BmsI	GCATC	3 cut(s)	114, 237, 388
BpiI	GAAGAC	1 cut(s)	428
Bpu10I	CCTNAGC	1 cut(s)	390
BpuMI	CCSGG	2 cut(s)	311, 312
BsaJI	CCNNGG	3 cut(s)	40, 310, 424
Bse118I	RCCGGY	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	130, 368
BseDI	CCNNGG	3 cut(s)	40, 310, 424
BseGI	GGATG	3 cut(s)	306, 403, 473
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	210, 404
BseXI	GCAGC	2 cut(s)	237, 430
BsgI	GTGCAG	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	2 cut(s)	366, 371
BsiEI	CGRYCG	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	310
BsiSI	CCGG	2 cut(s)	311, 459
BslFI	GGGAC	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	366, 371
BsoBI	CYCGRG	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	1 cut(s)	406
Bsp19I	CCATGG	1 cut(s)	40
BspACI	CCGC	3 cut(s)	15, 332, 456
BspANI	GGCC	2 cut(s)	366, 371
BspCNI	CTCAG	2 cut(s)	209, 403
BsrDI	GCAATG	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	458
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	3 cut(s)	40, 310, 424
BssMI	GATC	1 cut(s)	406
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	2 cut(s)	130, 368
Bst4CI	ACNGT	3 cut(s)	237, 322, 434
BstC8I	GCNNGC	2 cut(s)	416, 456
BstDEI	CTNAG	3 cut(s)	196, 390, 440
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	3 cut(s)	306, 403, 473
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	406
BstMCI	CGRYCG	1 cut(s)	19
BstNI	CCWGG	2 cut(s)	130, 368
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	4 cut(s)	128, 309, 310, 366
BstV1I	GCAGC	2 cut(s)	237, 430
BstV2I	GAAGAC	1 cut(s)	428
BsuRI	GGCC	2 cut(s)	366, 371
BtgI	CCRYGG	1 cut(s)	40
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	3 cut(s)	306, 403, 473
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	409
Cac8I	GCNNGC	2 cut(s)	416, 456
CfoI	GCGC	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	458
Cfr9I	CCCGGG	1 cut(s)	310
Csp6I	GTAC	2 cut(s)	238, 280
CviAII	CATG	2 cut(s)	41, 415
CviJI	RGCY	8 cut(s)	5, 133, 163, 366, 371, 421, 444, 454
CviKI_1	RGCY	8 cut(s)	5, 133, 163, 366, 371, 421, 444, 454
CviQI	GTAC	2 cut(s)	238, 280
DdeI	CTNAG	3 cut(s)	196, 390, 440
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
EaeI	YGGCCR	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	310
EcoRII	CCWGG	2 cut(s)	128, 366
EcoT14I	CCWWGG	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	2 cut(s)	44, 418
FaiI	YATR	6 cut(s)	42, 84, 170, 267, 344, 416
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	2 cut(s)	40, 414
FauI	CCCGC	1 cut(s)	463
Fnu4HI	GCNGC	3 cut(s)	6, 251, 419
FokI	GGATG	2 cut(s)	293, 410
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	3 cut(s)	6, 251, 419
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	3 cut(s)	6, 251, 419
HaeIII	GGCC	2 cut(s)	366, 371
HapII	CCGG	2 cut(s)	311, 459
HhaI	GCGC	1 cut(s)	389
Hin1II	CATG	2 cut(s)	44, 418
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	3 cut(s)	21, 49, 194
HpaII	CCGG	2 cut(s)	311, 459
HphI	GGTGA	4 cut(s)	46, 77, 346, 473
Hpy166II	GTNNAC	2 cut(s)	325, 337
Hpy188I	TCNGA	4 cut(s)	102, 199, 297, 425
Hpy188III	TCNNGA	2 cut(s)	109, 191
Hpy8I	GTNNAC	2 cut(s)	325, 337
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	3 cut(s)	237, 322, 434
HpyCH4IV	ACGT	3 cut(s)	207, 282, 339
HpyCH4V	TGCA	6 cut(s)	253, 289, 346, 401, 414, 418
HpyF3I	CTNAG	3 cut(s)	196, 390, 440
HpySE526I	ACGT	3 cut(s)	207, 282, 339
Hsp92II	CATG	2 cut(s)	44, 418
HspAI	GCGC	1 cut(s)	387
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	3 cut(s)	102, 426, 449
LpnPI	CCDG	9 cut(s)	48, 115, 126, 142, 324, 332, 353, 377, 380
Lsp1109I	GCAGC	2 cut(s)	237, 430
LweI	GCATC	3 cut(s)	114, 237, 388
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	3 cut(s)	207, 282, 339
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	2 cut(s)	416, 428
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	1 cut(s)	378
MlyI	GAGTC	2 cut(s)	30, 188
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	36, 204, 267, 343, 419
MseI	TTAA	1 cut(s)	472
MslI	CAYNNNNRTG	2 cut(s)	110, 332
MspI	CCGG	2 cut(s)	311, 459
MspR9I	CCNGG	4 cut(s)	130, 311, 312, 368
MvaI	CCWGG	2 cut(s)	130, 368
NciI	CCSGG	2 cut(s)	311, 312
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	2 cut(s)	44, 418
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	418
PaeI	GCATGC	1 cut(s)	418
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	49
PflFI	GACNNNGTC	1 cut(s)	90
PkrI	GCNGC	3 cut(s)	7, 252, 420
PleI	GAGTC	2 cut(s)	29, 188
PpsI	GAGTC	2 cut(s)	29, 188
Psp1406I	AACGTT	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	128, 366
PspGI	CCWGG	2 cut(s)	128, 366
PsyI	GACNNNGTC	1 cut(s)	90
RsaI	GTAC	2 cut(s)	239, 281
RsaNI	GTAC	2 cut(s)	238, 280
RseI	CAYNNNNRTG	2 cut(s)	110, 332
SaqAI	TTAA	1 cut(s)	472
SatI	GCNGC	3 cut(s)	6, 251, 419
Sau3AI	GATC	1 cut(s)	406
SchI	GAGTC	2 cut(s)	30, 188
ScrFI	CCNGG	4 cut(s)	130, 311, 312, 368
SduI	GDGCHC	1 cut(s)	456
SetI	ASST	9 cut(s)	67, 145, 210, 285, 306, 342, 396, 423, 446
SfaNI	GCATC	3 cut(s)	114, 237, 388
SgrAI	CRCCGGYG	1 cut(s)	458
SmaI	CCCGGG	1 cut(s)	312
SmiMI	CAYNNNNRTG	2 cut(s)	110, 332
SphI	GCATGC	1 cut(s)	418
Sse9I	AATT	1 cut(s)	378
SsiI	CCGC	3 cut(s)	15, 332, 456
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	4 cut(s)	128, 309, 310, 366
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	3 cut(s)	237, 322, 434
TaiI	ACGT	3 cut(s)	210, 285, 342
TaqI	TCGA	2 cut(s)	19, 32
TasI	AATT	1 cut(s)	378
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	472
Tru9I	TTAA	1 cut(s)	472
TscAI	CASTG	1 cut(s)	416
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	3 cut(s)	5, 250, 418
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	71, 314
TspGWI	ACGGA	1 cut(s)	436
TspMI	CCCGGG	1 cut(s)	310
TspRI	CASTG	1 cut(s)	416
Tth111I	GACNNNGTC	1 cut(s)	90
XceI	RCATGY	1 cut(s)	418
XmaI	CCCGGG	1 cut(s)	310
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.