Rroxscaffold_3G00269360

ATP-dependent Clp protease adapter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004724
Physical Location & Seq
Reverse (-)
62266931 .. 62268961
2031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00269360.1

Sequence Viewer

Length: 477 bp
ATGGCTGCCCTATGCGGTCGAGTCCCTCTTTCACCAACCCAAGTTTTCAATCTCACTAAACCAGGAGGCGATAAACCCTATTTTCATAAACAATGCCCAAATCGGAGCGCCGTGATGACTGCAACAACCACTGTGCTTGGAAAAGGAGGTGGGTTGTTGGAGAAGCCAACCATAGAGAAGACCACACCTGGTCGTGATTCTGAGTTTGACTTGAGGAAATCAAAGAAAATGTCCCCGCCTTATCGTGTGATGCTGCATAATGATAACTTTAACAAGCGGGAGTACGTTGTCCAAGTTCTGATGAAGGTTATCCCCGGAATGACAGTTGACATTGCAGTCAACGTGATGCAGGAGGCACATCACAACGGCCTGGCAGTGGTGATTGTGTGTGCTCAGGTGGATGCAGAAGACCACTGCATGCAGCTCAGAGGCAATGGTCTTCTGAGTTCGGTTGAGCCTGCAAGTGATGGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ClpS

Protein Analysis

158

Amino Acids

17.19

Weight (kDa)

8.62

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ClpS PF02617 78 - 144 3.1e-17 ATP-dependent Clp protease adaptor protein ClpS
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 335
AciI CCGC 3 cut(s) 15, 236, 277
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 376
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 3 cut(s) 61, 187, 369
AluBI AGCT 1 cut(s) 424
AluI AGCT 1 cut(s) 424
Alw21I GWGCWC 1 cut(s) 394
AoxI GGCC 1 cut(s) 367
ApeKI GCWGC 3 cut(s) 5, 253, 421
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AspLEI GCGC 1 cut(s) 110
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 2 cut(s) 24, 391
BbsI GAAGAC 3 cut(s) 185, 414, 431
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 2 cut(s) 240, 433
BccI CCATC 1 cut(s) 461
BceAI ACGGC 2 cut(s) 95, 382
BciT130I CCWGG 3 cut(s) 63, 189, 371
BcnI CCSGG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 111
BisI GCNGC 3 cut(s) 6, 254, 422
BlsI GCNGC 3 cut(s) 7, 255, 423
Bme1390I CCNGG 4 cut(s) 63, 189, 315, 371
BmrFI CCNGG 4 cut(s) 63, 189, 315, 371
BmsI GCATC 3 cut(s) 240, 336, 391
BpiI GAAGAC 3 cut(s) 185, 414, 431
Bpu10I CCTNAGC 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 313
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse3DI GCAATG 2 cut(s) 330, 439
BseBI CCWGG 3 cut(s) 63, 189, 371
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 2 cut(s) 406, 476
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMI GCAATG 2 cut(s) 330, 439
BseMII CTCAG 4 cut(s) 192, 407, 434, 439
BseXI GCAGC 2 cut(s) 240, 433
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 394
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 2 cut(s) 8, 217
BslI CCNNNNNNNGG 1 cut(s) 376
BsmFI GGGAC 2 cut(s) 8, 217
BsnI GGCC 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 394
BspACI CCGC 3 cut(s) 15, 236, 277
BspANI GGCC 1 cut(s) 369
BspCNI CTCAG 4 cut(s) 193, 406, 435, 438
BsrDI GCAATG 2 cut(s) 330, 439
BssECI CCNNGG 1 cut(s) 313
Bst2UI CCWGG 3 cut(s) 63, 189, 371
Bst4CI ACNGT 2 cut(s) 133, 325
BstC8I GCNNGC 2 cut(s) 419, 459
BstDEI CTNAG 4 cut(s) 201, 393, 425, 443
BstF5I GGATG 2 cut(s) 406, 476
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstMCI CGRYCG 1 cut(s) 19
BstNI CCWGG 3 cut(s) 63, 189, 371
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 4 cut(s) 61, 187, 313, 369
BstV1I GCAGC 2 cut(s) 240, 433
BstV2I GAAGAC 3 cut(s) 185, 414, 431
BsuRI GGCC 1 cut(s) 369
BtsCI GGATG 2 cut(s) 406, 476
BtsI GCAGTG 2 cut(s) 381, 412
BtsIMutI CAGTG 3 cut(s) 129, 381, 412
Cac8I GCNNGC 2 cut(s) 419, 459
CfoI GCGC 1 cut(s) 110
CsiI ACCWGGT 1 cut(s) 187
Csp6I GTAC 1 cut(s) 283
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 1 cut(s) 418
CviJI RGCY 5 cut(s) 5, 166, 369, 424, 457
CviKI_1 RGCY 5 cut(s) 5, 166, 369, 424, 457
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 4 cut(s) 201, 393, 425, 443
DrdI GACNNNNNNGTC 1 cut(s) 335
DseDI GACNNNNNNGTC 1 cut(s) 335
EcoRII CCWGG 3 cut(s) 61, 187, 369
FaeI CATG 1 cut(s) 421
FaiI YATR 5 cut(s) 13, 87, 173, 258, 419
FaqI GGGAC 2 cut(s) 8, 217
FatI CATG 1 cut(s) 417
FauI CCCGC 2 cut(s) 243, 270
Fnu4HI GCNGC 3 cut(s) 6, 254, 422
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 3 cut(s) 6, 254, 422
GlaI GCGC 1 cut(s) 109
GluI GCNGC 3 cut(s) 6, 254, 422
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 1 cut(s) 369
HapII CCGG 1 cut(s) 315
HhaI GCGC 1 cut(s) 110
Hin1II CATG 1 cut(s) 421
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 2 cut(s) 328, 340
HindII GTYRAC 2 cut(s) 328, 340
HinfI GANTC 2 cut(s) 21, 197
HpaII CCGG 1 cut(s) 315
HphI GGTGA 2 cut(s) 24, 391
Hpy166II GTNNAC 2 cut(s) 328, 340
Hpy188I TCNGA 5 cut(s) 105, 202, 300, 428, 444
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 2 cut(s) 328, 340
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 2 cut(s) 133, 325
HpyCH4IV ACGT 2 cut(s) 285, 342
HpyCH4V TGCA 8 cut(s) 122, 256, 335, 349, 404, 417, 421, 461
HpyF3I CTNAG 4 cut(s) 201, 393, 425, 443
HpySE526I ACGT 2 cut(s) 285, 342
Hsp92II CATG 1 cut(s) 421
HspAI GCGC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 2 cut(s) 240, 433
LweI GCATC 3 cut(s) 240, 336, 391
MabI ACCWGGT 1 cut(s) 187
MaeII ACGT 2 cut(s) 285, 342
MboII GAAGA 3 cut(s) 190, 419, 431
MhlI GDGCHC 1 cut(s) 394
MlyI GAGTC 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 6 cut(s) 36, 59, 140, 207, 346, 422
MseI TTAA 1 cut(s) 270
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 4 cut(s) 63, 189, 315, 371
MvaI CCWGG 3 cut(s) 63, 189, 371
NciI CCSGG 1 cut(s) 315
NlaIII CATG 1 cut(s) 421
NspI RCATGY 1 cut(s) 421
PaeI GCATGC 1 cut(s) 421
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 3 cut(s) 7, 255, 423
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 3 cut(s) 61, 187, 369
PspGI CCWGG 3 cut(s) 61, 187, 369
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 3 cut(s) 6, 254, 422
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 4 cut(s) 63, 189, 315, 371
SduI GDGCHC 1 cut(s) 394
SetI ASST 7 cut(s) 151, 190, 288, 309, 345, 399, 426
SexAI ACCWGGT 1 cut(s) 187
SfaNI GCATC 3 cut(s) 240, 336, 391
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SphI GCATGC 1 cut(s) 421
SsiI CCGC 3 cut(s) 15, 236, 277
StyD4I CCNGG 4 cut(s) 61, 187, 313, 369
TaaI ACNGT 2 cut(s) 133, 325
TaiI ACGT 2 cut(s) 288, 345
TaqI TCGA 1 cut(s) 19
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 3 cut(s) 136, 381, 419
TseI GCWGC 3 cut(s) 5, 253, 421
TspDTI ATGAA 2 cut(s) 74, 317
TspRI CASTG 3 cut(s) 136, 381, 419
XceI RCATGY 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.