RLG00000006570

ATP-dependent Clp protease adapter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004724
Physical Location & Seq
Forward (+)
8592443 .. 8593847
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006570

Sequence Viewer

Length: 477 bp
ATGGAGACTGCGATATGTGGGAGTCTGCCCCTCTCACCTAACCACGCCTTCAATCCTAAACCCGGAGACAAACACTTCCTTTGTAAGGGACCATGCACCAATCATTTCATTCCCATGGCTGTATCAACAACAGCACCTGGTAAAGGAGGAGGATTGTTAGAAAGGCCTGTTATAGAGAAAACCACTCCTGCTCGTGAGTCTGAGTTTGATCTCAGGAAATCGAGGAAAATATCTCCTCCATACCGTGTAATATTGCACAATGACAACTTCAATAAACGGGAATATATAGTGCAAGTGCTGATGAAGGTCATCCCGGGCATGACCCTTGATAATGCTTTTAATATTATGCAAGAAGCGAACCACAATGGCTTGTCAGTGGTGATCATATGCCCTCAGGCTGATGCCGAAGAACATTGCACACAACTCAGGCACAATGGGCTCCTGAGTTCAATTGAACCTGCAAGTGGGGGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ClpS

Protein Analysis

159

Amino Acids

17.29

Weight (kDa)

7.67

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ClpS PF02617 78 - 144 1.2e-16 ATP-dependent Clp protease adaptor protein ClpS
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 466
AfiI CCNNNNNNNGG 4 cut(s) 62, 85, 143, 464
AgsI TTSAA 4 cut(s) 52, 271, 450, 455
AjnI CCWGG 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 60
AlwNI CAGNNNCTG 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 313
AoxI GGCC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 89
AsuC2I CCSGG 3 cut(s) 63, 314, 315
AsuHPI GGTGA 2 cut(s) 27, 391
AvaI CYCGRG 1 cut(s) 313
AvaII GGWCC 1 cut(s) 89
AxyI CCTNAGG 1 cut(s) 393
BanII GRGCYC 1 cut(s) 441
BauI CACGAG 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 138
BclI TGATCA 1 cut(s) 381
BcnI CCSGG 3 cut(s) 63, 314, 315
BcoDI GTCTC 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 466
Bme1390I CCNGG 4 cut(s) 63, 138, 314, 315
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 2 cut(s) 90, 440
BmrFI CCNGG 4 cut(s) 63, 138, 314, 315
BmsI GCATC 1 cut(s) 391
BpuMI CCSGG 3 cut(s) 63, 314, 315
BsaJI CCNNGG 2 cut(s) 114, 313
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 85, 143, 464
Bse21I CCTNAGG 1 cut(s) 393
Bse3DI GCAATG 1 cut(s) 412
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 114, 313
BseGI GGATG 2 cut(s) 309, 476
BseLI CCNNNNNNNGG 4 cut(s) 62, 85, 143, 464
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 5 cut(s) 192, 226, 407, 434, 439
BseRI GAGGAG 2 cut(s) 162, 225
BshFI GGCC 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 313
BsiSI CCGG 2 cut(s) 63, 314
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 4 cut(s) 62, 85, 143, 464
BsmAI GTCTC 1 cut(s) 60
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 1 cut(s) 166
BsoBI CYCGRG 1 cut(s) 313
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 2 cut(s) 208, 381
Bsp19I CCATGG 1 cut(s) 114
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 5 cut(s) 193, 225, 406, 435, 438
BspLI GGNNCC 2 cut(s) 90, 440
BspMI ACCTGC 1 cut(s) 466
BsrDI GCAATG 1 cut(s) 412
BssECI CCNNGG 2 cut(s) 114, 313
BssMI GATC 2 cut(s) 208, 381
BssSI CACGAG 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 245
BstDEI CTNAG 5 cut(s) 201, 212, 393, 425, 443
BstDSI CCRYGG 1 cut(s) 114
BstENI CCTNNNNNAGG 2 cut(s) 83, 141
BstF5I GGATG 2 cut(s) 309, 476
BstKTI GATC 2 cut(s) 211, 384
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 2 cut(s) 208, 381
BstMWI GCNNNNNNNGC 1 cut(s) 436
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 4 cut(s) 61, 136, 312, 313
Bsu36I CCTNAGG 1 cut(s) 393
BsuRI GGCC 1 cut(s) 166
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 2 cut(s) 309, 476
BtsIMutI CAGTG 1 cut(s) 381
BveI ACCTGC 1 cut(s) 466
CaiI CAGNNNCTG 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 89
Cfr9I CCCGGG 1 cut(s) 313
CsiI ACCWGGT 1 cut(s) 136
CviAII CATG 3 cut(s) 93, 115, 319
CviJI RGCY 5 cut(s) 119, 166, 369, 398, 439
CviKI_1 RGCY 5 cut(s) 119, 166, 369, 398, 439
DdeI CTNAG 5 cut(s) 201, 212, 393, 425, 443
DpnI GATC 2 cut(s) 210, 383
DpnII GATC 2 cut(s) 208, 381
Eco130I CCWWGG 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 89
Eco81I CCTNAGG 1 cut(s) 393
Eco88I CYCGRG 1 cut(s) 313
EcoNI CCTNNNNNAGG 2 cut(s) 83, 141
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 3 cut(s) 96, 118, 322
FaqI GGGAC 1 cut(s) 102
FatI CATG 3 cut(s) 92, 114, 318
FauNDI CATATG 1 cut(s) 386
FbaI TGATCA 1 cut(s) 381
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 441
HaeIII GGCC 1 cut(s) 166
HapII CCGG 2 cut(s) 63, 314
Hin1II CATG 3 cut(s) 96, 118, 322
HinfI GANTC 2 cut(s) 22, 197
HpaII CCGG 2 cut(s) 63, 314
HphI GGTGA 2 cut(s) 27, 391
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 3 cut(s) 194, 214, 442
HpyAV CCTTC 2 cut(s) 58, 298
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 6 cut(s) 96, 256, 292, 349, 417, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 436
HpyF3I CTNAG 5 cut(s) 201, 212, 393, 425, 443
Hsp92II CATG 3 cut(s) 96, 118, 322
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 2 cut(s) 208, 381
LmnI GCTCC 1 cut(s) 444
LweI GCATC 1 cut(s) 391
MabI ACCWGGT 1 cut(s) 136
MalI GATC 2 cut(s) 210, 383
MboI GATC 2 cut(s) 208, 381
MboII GAAGA 1 cut(s) 419
MfeI CAATTG 1 cut(s) 450
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 1 cut(s) 450
MlyI GAGTC 2 cut(s) 31, 206
MnlI CCTC 6 cut(s) 41, 140, 143, 216, 246, 402
MseI TTAA 2 cut(s) 339, 475
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 2 cut(s) 63, 314
MspR9I CCNGG 4 cut(s) 63, 138, 314, 315
MunI CAATTG 1 cut(s) 450
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 436
NciI CCSGG 3 cut(s) 63, 314, 315
NcoI CCATGG 1 cut(s) 114
NdeI CATATG 1 cut(s) 386
NdeII GATC 2 cut(s) 208, 381
NlaIII CATG 3 cut(s) 96, 118, 322
NlaIV GGNNCC 2 cut(s) 90, 440
PceI AGGCCT 1 cut(s) 166
PleI GAGTC 2 cut(s) 30, 205
PpsI GAGTC 2 cut(s) 30, 205
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 90, 440
PspPI GGNCC 1 cut(s) 89
PstNI CAGNNNCTG 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 2 cut(s) 339, 475
Sau3AI GATC 2 cut(s) 208, 381
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 2 cut(s) 31, 206
ScrFI CCNGG 4 cut(s) 63, 138, 314, 315
SduI GDGCHC 1 cut(s) 441
SetI ASST 4 cut(s) 40, 139, 309, 460
SexAI ACCWGGT 1 cut(s) 136
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 1 cut(s) 89
SmaI CCCGGG 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 1 cut(s) 450
SseBI AGGCCT 1 cut(s) 166
SspI AATATT 2 cut(s) 252, 343
StuI AGGCCT 1 cut(s) 166
StyD4I CCNGG 4 cut(s) 61, 136, 312, 313
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 221
TasI AATT 1 cut(s) 450
Tru1I TTAA 2 cut(s) 339, 475
Tru9I TTAA 2 cut(s) 339, 475
TscAI CASTG 1 cut(s) 381
TspDTI ATGAA 2 cut(s) 97, 317
TspMI CCCGGG 1 cut(s) 313
TspRI CASTG 1 cut(s) 381
VpaK11BI GGWCC 1 cut(s) 89
XagI CCTNNNNNAGG 2 cut(s) 83, 141
XmaI CCCGGG 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.