Prupe.1G306800_v2.0.a1

ATP-dependent Clp protease adapter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004724
Physical Location & Seq
Forward (+)
29983521 .. 29986055
2535 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G306800.2

Sequence Viewer

Length: 483 bp
ATGGAGACTGCGATATGTGGGAGACTACCTCTCTCTCCCAACCACGTCTTCAATCCTAAACCAGCAGGAGACAGACACCCTCTTTGTAAAGGACCATGCACCAATCTTGGCATTCCTATGGCTGTATCAGCAACAGGACCTGGTAAAGGAGGAGGGTTGTTGGAAAGGCCAGTTATAGAAAAAACAACTCCTGCGCGTGATTCTGAGTTTGATTTGAGGAAATCAAGGAAAACAGCTCCTCCATATCGTGTAATTTTGCACAACGACAACTACAACAAACGGGAATACGTTGTGCAAGTACTGATGAAGGTTATCCCAGGGATGTCCCTTGATAATGCTGTTAATATTATGCAAGAAGCACACCATAATGGCTTGTCAATAGTGATCATATGTGCTCAGGCGGATGCTGAAGAACACTGCATGCAACTGAGGCACAATGGGCTTCTGAGTTCAATTGAACCTGCAAGTGGCGGCGGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ClpS

Protein Analysis

161

Amino Acids

17.27

Weight (kDa)

8.25

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 469
AccII CGCG 1 cut(s) 196
AciI CCGC 3 cut(s) 401, 471, 474
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 1 cut(s) 300
AfiI CCNNNNNNNGG 2 cut(s) 146, 467
AgsI TTSAA 3 cut(s) 52, 453, 458
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 2 cut(s) 139, 316
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 2 cut(s) 16, 63
AlwNI CAGNNNCTG 1 cut(s) 140
AoxI GGCC 1 cut(s) 167
ArsI GACNNNNNNTTYG 2 cut(s) 66, 98
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 2 cut(s) 92, 137
AvaII GGWCC 2 cut(s) 92, 137
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 397
BciT130I CCWGG 2 cut(s) 141, 318
BclI TGATCA 1 cut(s) 384
BcoDI GTCTC 2 cut(s) 16, 63
BfuAI ACCTGC 1 cut(s) 469
BisI GCNGC 1 cut(s) 472
BlsI GCNGC 1 cut(s) 473
BmcAI AGTACT 1 cut(s) 300
Bme1390I CCNGG 2 cut(s) 141, 318
Bme18I GGWCC 2 cut(s) 92, 137
BmgBI CACGTC 1 cut(s) 46
BmgT120I GGNCC 2 cut(s) 92, 137
BmrFI CCNGG 2 cut(s) 141, 318
BmsI GCATC 1 cut(s) 394
BpiI GAAGAC 1 cut(s) 40
BplI GAGNNNNNCTC 2 cut(s) 13, 45
Bpu10I CCTNAGC 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 316, 317
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 467
Bse1I ACTGG 1 cut(s) 170
BseBI CCWGG 2 cut(s) 141, 318
BseDI CCNNGG 2 cut(s) 316, 317
BseGI GGATG 3 cut(s) 327, 409, 482
BseLI CCNNNNNNNGG 2 cut(s) 146, 467
BseMII CTCAG 4 cut(s) 195, 410, 419, 437
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 2 cut(s) 165, 228
Bsh1236I CGCG 1 cut(s) 196
BshFI GGCC 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 397
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 2 cut(s) 146, 467
BsmAI GTCTC 2 cut(s) 16, 63
BsmFI GGGAC 1 cut(s) 310
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 1 cut(s) 384
BspACI CCGC 3 cut(s) 401, 471, 474
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 4 cut(s) 196, 409, 420, 438
BspFNI CGCG 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 469
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 316, 317
BssMI GATC 1 cut(s) 384
Bst2UI CCWGG 2 cut(s) 141, 318
BstC8I GCNNGC 1 cut(s) 422
BstDEI CTNAG 4 cut(s) 204, 396, 428, 446
BstENI CCTNNNNNAGG 1 cut(s) 144
BstF5I GGATG 3 cut(s) 327, 409, 482
BstFNI CGCG 1 cut(s) 196
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 1 cut(s) 387
BstMAI GTCTC 2 cut(s) 16, 63
BstMBI GATC 1 cut(s) 384
BstMWI GCNNNNNNNGC 3 cut(s) 128, 430, 439
BstNI CCWGG 2 cut(s) 141, 318
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 2 cut(s) 139, 316
BstUI CGCG 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 40
BsuRI GGCC 1 cut(s) 169
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 3 cut(s) 327, 409, 482
BtsI GCAGTG 1 cut(s) 415
BtsIMutI CAGTG 1 cut(s) 415
BveI ACCTGC 1 cut(s) 469
Cac8I GCNNGC 1 cut(s) 422
CaiI CAGNNNCTG 1 cut(s) 140
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 92, 137
CsiI ACCWGGT 1 cut(s) 139
Csp6I GTAC 1 cut(s) 299
CviAII CATG 2 cut(s) 96, 421
CviJI RGCY 5 cut(s) 122, 169, 236, 372, 442
CviKI_1 RGCY 5 cut(s) 122, 169, 236, 372, 442
CviQI GTAC 1 cut(s) 299
DdeI CTNAG 4 cut(s) 204, 396, 428, 446
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
EciI GGCGGA 1 cut(s) 416
Eco47I GGWCC 2 cut(s) 92, 137
Eco57I CTGAAG 1 cut(s) 429
EcoNI CCTNNNNNAGG 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 139, 316
FaeI CATG 2 cut(s) 99, 424
FaqI GGGAC 1 cut(s) 310
FatI CATG 2 cut(s) 95, 420
FauNDI CATATG 1 cut(s) 389
FbaI TGATCA 1 cut(s) 384
Fnu4HI GCNGC 1 cut(s) 472
FokI GGATG 2 cut(s) 334, 416
Fsp4HI GCNGC 1 cut(s) 472
GlaI GCGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 472
HaeIII GGCC 1 cut(s) 169
HhaI GCGC 1 cut(s) 196
Hin1II CATG 2 cut(s) 99, 424
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HinfI GANTC 1 cut(s) 200
Hpy188I TCNGA 2 cut(s) 205, 447
HpyAV CCTTC 1 cut(s) 301
HpyCH4IV ACGT 2 cut(s) 45, 288
HpyCH4V TGCA 7 cut(s) 99, 259, 295, 352, 420, 424, 464
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 430, 439
HpyF3I CTNAG 4 cut(s) 204, 396, 428, 446
HpySE526I ACGT 2 cut(s) 45, 288
Hsp92II CATG 2 cut(s) 99, 424
HspAI GCGC 1 cut(s) 194
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 1 cut(s) 384
LmnI GCTCC 1 cut(s) 241
LweI GCATC 1 cut(s) 394
MabI ACCWGGT 1 cut(s) 139
MaeII ACGT 2 cut(s) 45, 288
MalI GATC 1 cut(s) 386
MboI GATC 1 cut(s) 384
MboII GAAGA 2 cut(s) 40, 422
MfeI CAATTG 1 cut(s) 453
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 2 cut(s) 252, 453
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 7 cut(s) 39, 90, 143, 146, 210, 249, 423
MseI TTAA 2 cut(s) 342, 481
MslI CAYNNNNRTG 2 cut(s) 116, 366
MspR9I CCNGG 2 cut(s) 141, 318
MunI CAATTG 1 cut(s) 453
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 2 cut(s) 141, 318
MvnI CGCG 1 cut(s) 196
MwoI GCNNNNNNNGC 3 cut(s) 128, 430, 439
NdeI CATATG 1 cut(s) 389
NdeII GATC 1 cut(s) 384
NlaIII CATG 2 cut(s) 99, 424
NspI RCATGY 1 cut(s) 424
PaeI GCATGC 1 cut(s) 424
PasI CCCWGGG 1 cut(s) 317
PctI GAATGC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 473
PpuMI RGGWCCY 1 cut(s) 137
Psp5II RGGWCCY 1 cut(s) 137
Psp6I CCWGG 2 cut(s) 139, 316
PspGI CCWGG 2 cut(s) 139, 316
PspPI GGNCC 2 cut(s) 92, 137
PspPPI RGGWCCY 1 cut(s) 137
PstNI CAGNNNCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
RseI CAYNNNNRTG 2 cut(s) 116, 366
SaqAI TTAA 2 cut(s) 342, 481
SatI GCNGC 1 cut(s) 472
Sau3AI GATC 1 cut(s) 384
Sau96I GGNCC 2 cut(s) 92, 137
ScaI AGTACT 1 cut(s) 300
ScrFI CCNGG 2 cut(s) 141, 318
SduI GDGCHC 1 cut(s) 397
SetI ASST 7 cut(s) 31, 48, 142, 238, 291, 312, 463
SexAI ACCWGGT 1 cut(s) 139
SfaNI GCATC 1 cut(s) 394
SinI GGWCC 2 cut(s) 92, 137
SmiMI CAYNNNNRTG 2 cut(s) 116, 366
SphI GCATGC 1 cut(s) 424
Sse9I AATT 2 cut(s) 252, 453
SsiI CCGC 3 cut(s) 401, 471, 474
SspI AATATT 1 cut(s) 346
StyD4I CCNGG 2 cut(s) 139, 316
TaiI ACGT 2 cut(s) 48, 291
TasI AATT 2 cut(s) 252, 453
TatI WGTACW 1 cut(s) 298
TauI GCSGC 1 cut(s) 474
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 342, 481
Tru9I TTAA 2 cut(s) 342, 481
TscAI CASTG 1 cut(s) 422
TspDTI ATGAA 1 cut(s) 320
TspRI CASTG 1 cut(s) 422
VpaK11BI GGWCC 2 cut(s) 92, 137
XagI CCTNNNNNAGG 1 cut(s) 144
XceI RCATGY 1 cut(s) 424
ZrmI AGTACT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.