FvH4_5g12540

ATP-dependent Clp protease adapter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004724
Physical Location & Seq
Reverse (-)
7077344 .. 7079583
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12540.t1

Sequence Viewer

Length: 477 bp
ATGGCTGCCCTCTGCGGTCGAGTCCCTCTTTCACCTACCCAAGTTTTCAATCTCTCTAAATCAGGAGGAGATAAACCCTATTTTCATAAACAATGCCCGAATCGGAGCACCGTGATGACTGCAACAACCACTGTGCTTGGAAAAGGAGGTGGGTTGTTGGAGAAGCCGACCATAGAGAAGACCACACCTGGTCGTGATTCTGAGTTTGACTTGAGGAAATCAAAGAAAATGTCTCCTCCTTATCGAGTGATGCTGCATAATGATAACTTTAACAAGCGGGAGTATGTTGTCCAAGTTCTGATGAAGGTTATCCCTGGAATGACAGTTGACATTGCAGTCAACGTGATGCAGGAGGCACATCACAACGGCCTGGCAGTGGTGATTGTGTGTGCTCAAGTAGATGCAGAAGACCACTGCATGCAGCTCAGAGGCAATGGTCTTTTAAGTTCGGTTGAGCCTGCAGGTGATGGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ClpS

Protein Analysis

159

Amino Acids

17.17

Weight (kDa)

8.62

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ClpS PF02617 78 - 144 3.1e-17 ATP-dependent Clp protease adaptor protein ClpS
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 452
AasI GACNNNNNNGTC 1 cut(s) 335
Acc36I ACCTGC 1 cut(s) 452
AciI CCGC 2 cut(s) 15, 277
AfiI CCNNNNNNNGG 1 cut(s) 376
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 3 cut(s) 187, 313, 369
AluBI AGCT 1 cut(s) 424
AluI AGCT 1 cut(s) 424
Alw21I GWGCWC 2 cut(s) 110, 394
Alw26I GTCTC 1 cut(s) 237
AoxI GGCC 1 cut(s) 367
ApeKI GCWGC 3 cut(s) 5, 253, 421
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AsuHPI GGTGA 3 cut(s) 24, 391, 476
BbsI GAAGAC 2 cut(s) 185, 414
Bbv12I GWGCWC 2 cut(s) 110, 394
BbvI GCAGC 2 cut(s) 240, 433
BccI CCATC 1 cut(s) 461
BceAI ACGGC 1 cut(s) 382
BciT130I CCWGG 3 cut(s) 189, 315, 371
BcoDI GTCTC 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 459
BfuAI ACCTGC 1 cut(s) 452
BisI GCNGC 3 cut(s) 6, 254, 422
BlsI GCNGC 3 cut(s) 7, 255, 423
Bme1390I CCNGG 3 cut(s) 189, 315, 371
BmrFI CCNGG 3 cut(s) 189, 315, 371
BmsI GCATC 4 cut(s) 240, 336, 391, 461
BpiI GAAGAC 2 cut(s) 185, 414
BpuEI CTTGAG 2 cut(s) 232, 378
BsaJI CCNNGG 1 cut(s) 313
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse3DI GCAATG 2 cut(s) 330, 439
BseBI CCWGG 3 cut(s) 189, 315, 371
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 1 cut(s) 476
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMI GCAATG 2 cut(s) 330, 439
BseMII CTCAG 2 cut(s) 192, 439
BseRI GAGGAG 2 cut(s) 81, 225
BseXI GCAGC 2 cut(s) 240, 433
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 19
BsiHKAI GWGCWC 2 cut(s) 110, 394
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 376
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 8
BsnI GGCC 1 cut(s) 369
Bsp1286I GDGCHC 2 cut(s) 110, 394
BspACI CCGC 2 cut(s) 15, 277
BspANI GGCC 1 cut(s) 369
BspCNI CTCAG 2 cut(s) 193, 438
BspMAI CTGCAG 1 cut(s) 463
BspMI ACCTGC 1 cut(s) 452
BsrDI GCAATG 2 cut(s) 330, 439
BssECI CCNNGG 1 cut(s) 313
Bst2UI CCWGG 3 cut(s) 189, 315, 371
Bst4CI ACNGT 3 cut(s) 112, 133, 325
BstC8I GCNNGC 2 cut(s) 419, 459
BstDEI CTNAG 2 cut(s) 201, 425
BstF5I GGATG 1 cut(s) 476
BstMAI GTCTC 1 cut(s) 237
BstMCI CGRYCG 1 cut(s) 19
BstNI CCWGG 3 cut(s) 189, 315, 371
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 3 cut(s) 187, 313, 369
BstSFI CTRYAG 1 cut(s) 459
BstV1I GCAGC 2 cut(s) 240, 433
BstV2I GAAGAC 2 cut(s) 185, 414
BsuRI GGCC 1 cut(s) 369
BtsCI GGATG 1 cut(s) 476
BtsI GCAGTG 2 cut(s) 381, 412
BtsIMutI CAGTG 3 cut(s) 129, 381, 412
BveI ACCTGC 1 cut(s) 452
Cac8I GCNNGC 2 cut(s) 419, 459
CsiI ACCWGGT 1 cut(s) 187
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 1 cut(s) 418
CviJI RGCY 5 cut(s) 5, 166, 369, 424, 457
CviKI_1 RGCY 5 cut(s) 5, 166, 369, 424, 457
DdeI CTNAG 2 cut(s) 201, 425
DrdI GACNNNNNNGTC 1 cut(s) 335
DseDI GACNNNNNNGTC 1 cut(s) 335
EcoRII CCWGG 3 cut(s) 187, 313, 369
FaeI CATG 1 cut(s) 421
FaiI YATR 5 cut(s) 87, 173, 258, 285, 419
FaqI GGGAC 1 cut(s) 8
FatI CATG 1 cut(s) 417
FauI CCCGC 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 6, 254, 422
Fsp4HI GCNGC 3 cut(s) 6, 254, 422
GluI GCNGC 3 cut(s) 6, 254, 422
HaeIII GGCC 1 cut(s) 369
Hin1II CATG 1 cut(s) 421
HincII GTYRAC 2 cut(s) 328, 340
HindII GTYRAC 2 cut(s) 328, 340
HinfI GANTC 3 cut(s) 21, 100, 197
HphI GGTGA 3 cut(s) 24, 391, 476
Hpy166II GTNNAC 2 cut(s) 328, 340
Hpy188I TCNGA 4 cut(s) 105, 202, 300, 428
Hpy188III TCNNGA 2 cut(s) 63, 194
Hpy8I GTNNAC 2 cut(s) 328, 340
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 3 cut(s) 112, 133, 325
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 8 cut(s) 122, 256, 335, 349, 404, 417, 421, 461
HpyF3I CTNAG 2 cut(s) 201, 425
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 1 cut(s) 421
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 2 cut(s) 240, 433
LweI GCATC 4 cut(s) 240, 336, 391, 461
MabI ACCWGGT 1 cut(s) 187
MaeII ACGT 1 cut(s) 342
MboII GAAGA 2 cut(s) 190, 419
MhlI GDGCHC 2 cut(s) 110, 394
MlyI GAGTC 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 8 cut(s) 20, 36, 59, 140, 207, 246, 346, 422
MseI TTAA 2 cut(s) 270, 443
MslI CAYNNNNRTG 1 cut(s) 113
MspR9I CCNGG 3 cut(s) 189, 315, 371
MvaI CCWGG 3 cut(s) 189, 315, 371
NlaIII CATG 1 cut(s) 421
NspI RCATGY 1 cut(s) 421
PaeI GCATGC 1 cut(s) 421
PaqCI CACCTGC 1 cut(s) 452
PfeI GAWTC 2 cut(s) 100, 197
PkrI GCNGC 3 cut(s) 7, 255, 423
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 3 cut(s) 187, 313, 369
PspGI CCWGG 3 cut(s) 187, 313, 369
PstI CTGCAG 1 cut(s) 463
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 2 cut(s) 270, 443
SatI GCNGC 3 cut(s) 6, 254, 422
SbfI CCTGCAGG 1 cut(s) 463
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 3 cut(s) 189, 315, 371
SdaI CCTGCAGG 1 cut(s) 463
SduI GDGCHC 2 cut(s) 110, 394
SetI ASST 7 cut(s) 37, 151, 190, 309, 345, 426, 466
SexAI ACCWGGT 1 cut(s) 187
SfaNI GCATC 4 cut(s) 240, 336, 391, 461
SfcI CTRYAG 1 cut(s) 459
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 211, 393
SmoI CTYRAG 2 cut(s) 211, 393
SphI GCATGC 1 cut(s) 421
Sse8387I CCTGCAGG 1 cut(s) 463
SsiI CCGC 2 cut(s) 15, 277
StyD4I CCNGG 3 cut(s) 187, 313, 369
TaaI ACNGT 3 cut(s) 112, 133, 325
TaiI ACGT 1 cut(s) 345
TaqI TCGA 2 cut(s) 19, 244
TfiI GAWTC 2 cut(s) 100, 197
Tru1I TTAA 2 cut(s) 270, 443
Tru9I TTAA 2 cut(s) 270, 443
TscAI CASTG 3 cut(s) 136, 381, 419
TseI GCWGC 3 cut(s) 5, 253, 421
TspDTI ATGAA 2 cut(s) 74, 317
TspRI CASTG 3 cut(s) 136, 381, 419
XceI RCATGY 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.