Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004724

Physical Location & Seq

Genomic Coordinates Reverse (-)

58986664 .. 58987789

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0465100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGTTCTTGCATAAGCAAATGCAGTCCCAAAAACCACTTCCAAGTCGAAGAAGATGATCAATTCTGCAATCATGTCCAAGACAAACTGGTAATCTCGACCCAACCTCCTAAACCTACCACTCCAATTCCTTCTCACCATTCAAACAAAATCTCACCCTTTCCTTCTTCCCCTTCAAATTCCACTTCCTCAGCTTCTTCCTTCAGTTATTGCCCCACCACCACTACTAGTAGTACTACTAATTCTAACTCCACCATCAACTCATCGAGCTCAACCTTGTCAAGCAGCGCTTCTTCAGTTTCGAGCAGTTCAAAGATCGACAGATCATTTTCGAACGAGTTCTTGTGGTCTTGCTACAAAGAAAACCAGCATATATCTCGCATTGCTTCAATCAAGGAAGCACAAAAACCAGTTGCAGCGGCAACGTTGAAAAAACAGCAGCAGCCGAGCCCAATAAACAGAGGAAATGGGTGTACTAAAACGACACCGCAGAAGAGAGTCCGGACAAGTACTTCACCAACTCTGAAGCGACAGAAGAGCTTCCGTAAAGAGCCCGAGAAGCCCGTGATCTCTGCATATTCTAGAAGCTTGAGGTCACCGTCTCCGAGTAGAAGGTTCAATGTTTCAGAGAAGAACAGGGGAACAGTAATGGCCAACCCGCCAAAAAAGGGCTCAAATCTTAGGCCGGCTAGTCCGAACAACAACCCAAGTGGGTTAATGGCTCGGCCTTGTTTGAAGAGTCCTGCGAGAGAGACACAGACAAGGATTCACAGGATCAGTTCCAAAATCGATGAAGTTGCTGTTAGAGAAGCTCTGGCTCATGACCATTACATGGAGTCTGTTCCTGAGGACATTGATAACCCTCTAATCTCTTTGGATTGTTTTATTTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ClpS

Protein Analysis

298

Amino Acids

32.73

Weight (kDa)

9.8

Isoelectric Point (pI)

69.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68660 AT1G68660
fragaria_vesca	FvH4_5g12540
malus_domestica	MD13G1045100.v1.1 MD14G1223300.v1.1 MD16G1046400.v1.1
prunus_persica	Prupe.1G306800_v2.0.a1 Prupe.1G306800_v2.0.a1 Prupe.1G306800_v2.0.a1 Prupe.5G218600_v2.0.a1
pyrus_communis	pycom06g18970
rosa_chinensis	RchiOBHm_Chr4g0435651 RchiOBHm_Chr7g0184811
rosa_laevigata	RLG00000004952 RLG00000006570 RLG00000006573
rosa_multiflora	Rmu_sc0000051.1_g000009 Rmu_ssc0000289.1_g000015
rosa_roxburghii	Rroxscaffold_3G00269360 Rroxscaffold_5G00376870
rosa_rugosa	Rorug06G0465100
rosa_samantha	Rh4AG342800 Rh4BG351200 Rh4CG365800 Rh4DG345500 Rh7AG077800 Rh7BG069500 Rh7CG070300 Rh7DG069700
rosa_wichuraiana	Rw4G029920 Rw7G005760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	832
AccIII	TCCGGA	1 cut(s)	501
AciI	CCGC	3 cut(s)	419, 488, 659
AclI	AACGTT	1 cut(s)	425
AclWI	GGATC	1 cut(s)	782
AcoI	YGGCCR	1 cut(s)	651
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	3 cut(s)	187, 279, 545
AfaI	GTAC	3 cut(s)	235, 475, 511
AfeI	AGCGCT	1 cut(s)	289
AfiI	CCNNNNNNNGG	2 cut(s)	668, 832
AgsI	TTSAA	7 cut(s)	144, 177, 312, 390, 430, 619, 736
AhlI	ACTAGT	1 cut(s)	227
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	5 cut(s)	194, 270, 540, 588, 812
AluI	AGCT	5 cut(s)	194, 270, 540, 588, 812
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	2 cut(s)	606, 746
AlwI	GGATC	1 cut(s)	782
Ama87I	CYCGRG	1 cut(s)	554
Aor13HI	TCCGGA	1 cut(s)	501
Aor51HI	AGCGCT	1 cut(s)	289
AoxI	GGCC	3 cut(s)	651, 683, 725
ApeKI	GCWGC	4 cut(s)	285, 416, 439, 442
ApoI	RAATTY	1 cut(s)	178
Asp700I	GAANNNNTTC	2 cut(s)	338, 539
AspLEI	GCGC	1 cut(s)	290
AsuHPI	GGTGA	4 cut(s)	128, 147, 507, 588
AsuII	TTCGAA	1 cut(s)	332
AvaI	CYCGRG	1 cut(s)	554
AxyI	CCTNAGG	1 cut(s)	846
BalI	TGGCCA	1 cut(s)	653
BanII	GRGCYC	4 cut(s)	272, 452, 555, 674
Bbv12I	GWGCWC	1 cut(s)	272
BbvCI	CCTCAGC	1 cut(s)	190
BbvI	GCAGC	4 cut(s)	297, 428, 451, 454
BccI	CCATC	1 cut(s)	263
BcgI	CGANNNNNNTGC	4 cut(s)	359, 393, 779, 813
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	606, 746
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	3 cut(s)	228, 582, 690
BfoI	RGCGCY	1 cut(s)	291
BisI	GCNGC	5 cut(s)	286, 417, 420, 440, 443
BlsI	GCNGC	5 cut(s)	287, 418, 421, 441, 444
BmcAI	AGTACT	2 cut(s)	235, 511
BmeT110I	CYCGRG	1 cut(s)	554
Bpu10I	CCTNAGC	1 cut(s)	190
Bpu14I	TTCGAA	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	610
Bsa29I	ATCGAT	1 cut(s)	789
BsaWI	WCCGGW	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	2 cut(s)	668, 832
Bse118I	RCCGGY	1 cut(s)	685
Bse1I	ACTGG	2 cut(s)	93, 410
Bse21I	CCTNAGG	1 cut(s)	846
Bse3DI	GCAATG	1 cut(s)	381
BseAI	TCCGGA	1 cut(s)	501
BseCI	ATCGAT	1 cut(s)	789
BseLI	CCNNNNNNNGG	2 cut(s)	668, 832
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	204, 837
BseNI	ACTGG	2 cut(s)	93, 410
BseXI	GCAGC	4 cut(s)	297, 428, 451, 454
BshFI	GGCC	3 cut(s)	653, 685, 727
BshVI	ATCGAT	1 cut(s)	789
BsiHKAI	GWGCWC	1 cut(s)	272
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	2 cut(s)	502, 686
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	668, 832
BsmAI	GTCTC	2 cut(s)	606, 746
BsmBI	CGTCTC	1 cut(s)	606
BsmFI	GGGAC	1 cut(s)	12
BsnI	GGCC	3 cut(s)	653, 685, 727
BsoBI	CYCGRG	1 cut(s)	554
Bsp119I	TTCGAA	1 cut(s)	332
Bsp1286I	GDGCHC	4 cut(s)	272, 452, 555, 674
Bsp13I	TCCGGA	1 cut(s)	501
Bsp143I	GATC	5 cut(s)	58, 315, 323, 567, 774
BspACI	CCGC	3 cut(s)	419, 488, 659
BspANI	GGCC	3 cut(s)	653, 685, 727
BspCNI	CTCAG	2 cut(s)	203, 838
BspDI	ATCGAT	1 cut(s)	789
BspEI	TCCGGA	1 cut(s)	501
BspHI	TCATGA	1 cut(s)	820
BspPI	GGATC	1 cut(s)	782
BspQI	GCTCTTC	1 cut(s)	530
BspT104I	TTCGAA	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	685
BsrI	ACTGG	2 cut(s)	93, 410
BssAI	RCCGGY	1 cut(s)	685
BssMI	GATC	5 cut(s)	58, 315, 323, 567, 774
Bst4CI	ACNGT	2 cut(s)	600, 646
Bst6I	CTCTTC	3 cut(s)	488, 530, 731
BstBI	TTCGAA	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	687
BstDEI	CTNAG	3 cut(s)	190, 680, 846
BstEII	GGTNACC	1 cut(s)	594
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	5 cut(s)	61, 318, 326, 570, 777
BstMAI	GTCTC	2 cut(s)	606, 746
BstMBI	GATC	5 cut(s)	58, 315, 323, 567, 774
BstMWI	GCNNNNNNNGC	1 cut(s)	559
BstPI	GGTNACC	1 cut(s)	594
BstV1I	GCAGC	4 cut(s)	297, 428, 451, 454
Bsu15I	ATCGAT	1 cut(s)	789
Bsu36I	CCTNAGG	1 cut(s)	846
BsuRI	GGCC	3 cut(s)	653, 685, 727
BsuTUI	ATCGAT	1 cut(s)	789
Cac8I	GCNNGC	1 cut(s)	687
CciI	TCATGA	1 cut(s)	820
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	685
ClaI	ATCGAT	1 cut(s)	789
Csp6I	GTAC	3 cut(s)	234, 474, 510
CspCI	CAANNNNNGTGG	2 cut(s)	691, 726
CviAII	CATG	3 cut(s)	74, 821, 832
CviQI	GTAC	3 cut(s)	234, 474, 510
DdeI	CTNAG	3 cut(s)	190, 680, 846
DpnI	GATC	5 cut(s)	60, 317, 325, 569, 776
DpnII	GATC	5 cut(s)	58, 315, 323, 567, 774
EaeI	YGGCCR	1 cut(s)	651
Eam1104I	CTCTTC	3 cut(s)	488, 530, 731
EarI	CTCTTC	3 cut(s)	488, 530, 731
Ecl136II	GAGCTC	1 cut(s)	270
Eco24I	GRGCYC	4 cut(s)	272, 452, 555, 674
Eco47III	AGCGCT	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	270
Eco57I	CTGAAG	3 cut(s)	187, 279, 545
Eco81I	CCTNAGG	1 cut(s)	846
Eco88I	CYCGRG	1 cut(s)	554
Eco91I	GGTNACC	1 cut(s)	594
EcoICRI	GAGCTC	1 cut(s)	270
EcoO65I	GGTNACC	1 cut(s)	594
EcoT38I	GRGCYC	4 cut(s)	272, 452, 555, 674
Esp3I	CGTCTC	1 cut(s)	606
FaeI	CATG	3 cut(s)	77, 824, 835
FaiI	YATR	7 cut(s)	14, 75, 372, 374, 577, 822, 833
FalI	AAGNNNNNCTT	2 cut(s)	274, 306
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	3 cut(s)	73, 820, 831
FauI	CCCGC	1 cut(s)	666
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	5 cut(s)	286, 417, 420, 440, 443
FriOI	GRGCYC	4 cut(s)	272, 452, 555, 674
Fsp4HI	GCNGC	5 cut(s)	286, 417, 420, 440, 443
FspBI	CTAG	3 cut(s)	228, 582, 690
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	5 cut(s)	286, 417, 420, 440, 443
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	653, 685, 727
HapII	CCGG	2 cut(s)	502, 686
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	3 cut(s)	77, 824, 835
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HindIII	AAGCTT	1 cut(s)	586
HinfI	GANTC	4 cut(s)	498, 739, 766, 836
HpaII	CCGG	2 cut(s)	502, 686
HphI	GGTGA	4 cut(s)	128, 147, 507, 588
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188I	TCNGA	4 cut(s)	525, 606, 628, 696
Hpy188III	TCNNGA	5 cut(s)	97, 502, 582, 821, 845
Hpy8I	GTNNAC	1 cut(s)	474
HpyAV	CCTTC	5 cut(s)	141, 174, 183, 211, 606
HpyCH4III	ACNGT	2 cut(s)	600, 646
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	5 cut(s)	12, 24, 69, 416, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	559
HpyF3I	CTNAG	3 cut(s)	190, 680, 846
HpySE526I	ACGT	1 cut(s)	425
Hsp92II	CATG	3 cut(s)	77, 824, 835
HspAI	GCGC	1 cut(s)	288
Kpn2I	TCCGGA	1 cut(s)	501
KroI	GCCGGC	1 cut(s)	685
KroNI	GCCGGC	1 cut(s)	687
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	5 cut(s)	58, 315, 323, 567, 774
LguI	GCTCTTC	1 cut(s)	530
Lsp1109I	GCAGC	4 cut(s)	297, 428, 451, 454
MaeI	CTAG	3 cut(s)	228, 582, 690
MaeII	ACGT	1 cut(s)	425
MaeIII	GTNAC	1 cut(s)	594
MalI	GATC	5 cut(s)	60, 317, 325, 569, 776
MboI	GATC	5 cut(s)	58, 315, 323, 567, 774
MboII	GAAGA	9 cut(s)	62, 65, 159, 189, 285, 505, 547, 643, 748
MhlI	GDGCHC	4 cut(s)	272, 452, 555, 674
MlsI	TGGCCA	1 cut(s)	653
MluCI	AATT	4 cut(s)	62, 126, 178, 241
MluNI	TGGCCA	1 cut(s)	653
MlyI	GAGTC	3 cut(s)	507, 748, 845
MnlI	CCTC	6 cut(s)	117, 199, 455, 585, 841, 873
Mox20I	TGGCCA	1 cut(s)	653
MroI	TCCGGA	1 cut(s)	501
MroNI	GCCGGC	1 cut(s)	685
MroXI	GAANNNNTTC	2 cut(s)	338, 539
MscI	TGGCCA	1 cut(s)	653
MseI	TTAA	1 cut(s)	716
Msp20I	TGGCCA	1 cut(s)	653
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	2 cut(s)	502, 686
MwoI	GCNNNNNNNGC	1 cut(s)	559
NaeI	GCCGGC	1 cut(s)	687
NdeII	GATC	5 cut(s)	58, 315, 323, 567, 774
NgoMIV	GCCGGC	1 cut(s)	685
NlaIII	CATG	3 cut(s)	77, 824, 835
NmeAIII	GCCGAG	2 cut(s)	471, 703
NmuCI	GTSAC	1 cut(s)	594
NspV	TTCGAA	1 cut(s)	332
PagI	TCATGA	1 cut(s)	820
PciSI	GCTCTTC	1 cut(s)	530
PdiI	GCCGGC	1 cut(s)	687
PdmI	GAANNNNTTC	2 cut(s)	338, 539
PfeI	GAWTC	1 cut(s)	766
PflMI	CCANNNNNTGG	1 cut(s)	832
PkrI	GCNGC	5 cut(s)	287, 418, 421, 441, 444
PleI	GAGTC	3 cut(s)	506, 747, 844
PpsI	GAGTC	3 cut(s)	506, 747, 844
Psp124BI	GAGCTC	1 cut(s)	272
Psp1406I	AACGTT	1 cut(s)	425
PspEI	GGTNACC	1 cut(s)	594
RsaI	GTAC	3 cut(s)	235, 475, 511
RsaNI	GTAC	3 cut(s)	234, 474, 510
SacI	GAGCTC	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	530
SaqAI	TTAA	1 cut(s)	716
SatI	GCNGC	5 cut(s)	286, 417, 420, 440, 443
Sau3AI	GATC	5 cut(s)	58, 315, 323, 567, 774
ScaI	AGTACT	2 cut(s)	235, 511
SchI	GAGTC	3 cut(s)	507, 748, 845
SduI	GDGCHC	4 cut(s)	272, 452, 555, 674
SfuI	TTCGAA	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	4 cut(s)	62, 126, 178, 241
SsiI	CCGC	3 cut(s)	419, 488, 659
SspMI	CTAG	3 cut(s)	228, 582, 690
SstI	GAGCTC	1 cut(s)	272
TaaI	ACNGT	2 cut(s)	600, 646
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	7 cut(s)	48, 98, 266, 302, 318, 332, 789
TasI	AATT	4 cut(s)	62, 126, 178, 241
TatI	WGTACW	3 cut(s)	233, 473, 509
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	1 cut(s)	766
Tru1I	TTAA	1 cut(s)	716
Tru9I	TTAA	1 cut(s)	716
TseFI	GTSAC	1 cut(s)	594
TseI	GCWGC	4 cut(s)	285, 416, 439, 442
Tsp45I	GTSAC	1 cut(s)	594
TspDTI	ATGAA	1 cut(s)	807
TspGWI	ACGGA	1 cut(s)	533
Van91I	CCANNNNNTGG	1 cut(s)	832
XapI	RAATTY	1 cut(s)	178
XbaI	TCTAGA	1 cut(s)	581
XmnI	GAANNNNTTC	2 cut(s)	338, 539
XspI	CTAG	3 cut(s)	228, 582, 690
ZrmI	AGTACT	2 cut(s)	235, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.