RchiOBHm_Chr7g0184811

ATP-dependent Clp protease adapter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004724
Physical Location & Seq
Forward (+)
5201241 .. 5203349
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16489

Sequence Viewer

Length: 474 bp
ATGGCTGCCCTATGCGGTCGAGTCCCTCTTTCACCCACCCAAGTTTTCAATCTCACTAAATCAGGCGATAAACCCTATTTTCATAAACAATGCCCAAATCGGAGCGCCGTGATGACTGCAACAACCACTGTGCTTGGAAAAGGAGGTGGGTTGTTGGAGAAGCCAACCATAGAGAAGACCACACCTGGTCGTGATTCTGAGTTTGACTTGAGGAAATCAAAGAAAATGTCCCCGCCTTATCGTGTGATGCTGCATAATGATAACTTTAACAAGCGGGAGTATGTTGTCCAAGTTCTGATGAAGGTTATCCCCGGAATGACAGTTGACATTGCAGTCAACGTGATGCAGGAGGCACATCACAACGGCCTGGCAGTGGTGATTGTGTGCGCTCAGGTGGATGCAGAAGACCACTGCATGCAGCTCAGAGGCAATGGTCTTCTGAGTTCGGTTGAGCCTGCAAGTGATGGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ClpS

Protein Analysis

157

Amino Acids

17.13

Weight (kDa)

8.62

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ClpS PF02617 77 - 143 3.1e-17 ATP-dependent Clp protease adaptor protein ClpS
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AciI CCGC 3 cut(s) 15, 233, 274
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 2 cut(s) 184, 366
AluBI AGCT 1 cut(s) 421
AluI AGCT 1 cut(s) 421
AoxI GGCC 1 cut(s) 364
ApeKI GCWGC 3 cut(s) 5, 250, 418
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AspLEI GCGC 2 cut(s) 107, 389
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 2 cut(s) 24, 388
BbsI GAAGAC 3 cut(s) 182, 411, 428
BbvI GCAGC 2 cut(s) 237, 430
BccI CCATC 1 cut(s) 458
BceAI ACGGC 2 cut(s) 92, 379
BciT130I CCWGG 2 cut(s) 186, 368
BcnI CCSGG 1 cut(s) 312
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 3 cut(s) 6, 251, 419
BlsI GCNGC 3 cut(s) 7, 252, 420
Bme1390I CCNGG 3 cut(s) 186, 312, 368
BmrFI CCNGG 3 cut(s) 186, 312, 368
BmsI GCATC 3 cut(s) 237, 333, 388
BpiI GAAGAC 3 cut(s) 182, 411, 428
Bpu10I CCTNAGC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse3DI GCAATG 2 cut(s) 327, 436
BseBI CCWGG 2 cut(s) 186, 368
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 2 cut(s) 403, 473
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 2 cut(s) 327, 436
BseMII CTCAG 4 cut(s) 189, 404, 431, 436
BseXI GCAGC 2 cut(s) 237, 430
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 1 cut(s) 366
BsiEI CGRYCG 1 cut(s) 19
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 2 cut(s) 8, 214
BslI CCNNNNNNNGG 1 cut(s) 373
BsmFI GGGAC 2 cut(s) 8, 214
BsnI GGCC 1 cut(s) 366
BspACI CCGC 3 cut(s) 15, 233, 274
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 4 cut(s) 190, 403, 432, 435
BsrDI GCAATG 2 cut(s) 327, 436
BssECI CCNNGG 1 cut(s) 310
Bst2UI CCWGG 2 cut(s) 186, 368
Bst4CI ACNGT 2 cut(s) 130, 322
BstC8I GCNNGC 2 cut(s) 416, 456
BstDEI CTNAG 4 cut(s) 198, 390, 422, 440
BstF5I GGATG 2 cut(s) 403, 473
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 2 cut(s) 107, 389
BstMCI CGRYCG 1 cut(s) 19
BstNI CCWGG 2 cut(s) 186, 368
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 3 cut(s) 184, 310, 366
BstV1I GCAGC 2 cut(s) 237, 430
BstV2I GAAGAC 3 cut(s) 182, 411, 428
BsuRI GGCC 1 cut(s) 366
BtsCI GGATG 2 cut(s) 403, 473
BtsI GCAGTG 2 cut(s) 378, 409
BtsIMutI CAGTG 3 cut(s) 126, 378, 409
Cac8I GCNNGC 2 cut(s) 416, 456
CfoI GCGC 2 cut(s) 107, 389
CsiI ACCWGGT 1 cut(s) 184
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviAII CATG 1 cut(s) 415
CviJI RGCY 5 cut(s) 5, 163, 366, 421, 454
CviKI_1 RGCY 5 cut(s) 5, 163, 366, 421, 454
DdeI CTNAG 4 cut(s) 198, 390, 422, 440
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
EcoRII CCWGG 2 cut(s) 184, 366
FaeI CATG 1 cut(s) 418
FaiI YATR 6 cut(s) 13, 84, 170, 255, 282, 416
FaqI GGGAC 2 cut(s) 8, 214
FatI CATG 1 cut(s) 414
FauI CCCGC 2 cut(s) 240, 267
Fnu4HI GCNGC 3 cut(s) 6, 251, 419
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 3 cut(s) 6, 251, 419
GlaI GCGC 2 cut(s) 106, 388
GluI GCNGC 3 cut(s) 6, 251, 419
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 1 cut(s) 366
HapII CCGG 1 cut(s) 312
HhaI GCGC 2 cut(s) 107, 389
Hin1II CATG 1 cut(s) 418
Hin6I GCGC 2 cut(s) 105, 387
HinP1I GCGC 2 cut(s) 105, 387
HincII GTYRAC 2 cut(s) 325, 337
HindII GTYRAC 2 cut(s) 325, 337
HinfI GANTC 2 cut(s) 21, 194
HpaII CCGG 1 cut(s) 312
HphI GGTGA 2 cut(s) 24, 388
Hpy166II GTNNAC 2 cut(s) 325, 337
Hpy188I TCNGA 5 cut(s) 102, 199, 297, 425, 441
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 2 cut(s) 325, 337
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 2 cut(s) 130, 322
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 8 cut(s) 119, 253, 332, 346, 401, 414, 418, 458
HpyF3I CTNAG 4 cut(s) 198, 390, 422, 440
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 1 cut(s) 418
HspAI GCGC 2 cut(s) 105, 387
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 9 cut(s) 48, 171, 198, 325, 332, 353, 377, 380, 468
Lsp1109I GCAGC 2 cut(s) 237, 430
LweI GCATC 3 cut(s) 237, 333, 388
MabI ACCWGGT 1 cut(s) 184
MaeII ACGT 1 cut(s) 339
MboII GAAGA 3 cut(s) 187, 416, 428
MlyI GAGTC 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 5 cut(s) 36, 137, 204, 343, 419
MseI TTAA 1 cut(s) 267
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 3 cut(s) 186, 312, 368
MvaI CCWGG 2 cut(s) 186, 368
NciI CCSGG 1 cut(s) 312
NlaIII CATG 1 cut(s) 418
NspI RCATGY 1 cut(s) 418
PaeI GCATGC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 3 cut(s) 7, 252, 420
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 2 cut(s) 184, 366
PspGI CCWGG 2 cut(s) 184, 366
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 3 cut(s) 6, 251, 419
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 3 cut(s) 186, 312, 368
SetI ASST 6 cut(s) 148, 187, 306, 342, 396, 423
SexAI ACCWGGT 1 cut(s) 184
SfaNI GCATC 3 cut(s) 237, 333, 388
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
SphI GCATGC 1 cut(s) 418
SsiI CCGC 3 cut(s) 15, 233, 274
StyD4I CCNGG 3 cut(s) 184, 310, 366
TaaI ACNGT 2 cut(s) 130, 322
TaiI ACGT 1 cut(s) 342
TaqI TCGA 1 cut(s) 19
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 3 cut(s) 133, 378, 416
TseI GCWGC 3 cut(s) 5, 250, 418
TspDTI ATGAA 2 cut(s) 71, 314
TspRI CASTG 3 cut(s) 133, 378, 416
XceI RCATGY 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.