Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000289.1

Orthogroup ID

OG0004724

Physical Location & Seq

Genomic Coordinates Reverse (-)

77287 .. 79061

Gene Structure 1775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000289.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggctgccctatgcggtcgagtccctctttcacccacccaagttttcaatctcactaaatcaggaggcgataaaccctattttcataaacaatgcccaaatcggagcgccgtgatgactgcaacaaccactgtgcttggaaaaggaggtgggttgttggagaagccaaccatagagaagaccacacctggtcgtgattctgagtttgacttgaggaaatcaaagaaaatgtccccgccttatcgtgtgatgctgcataatgataactttaacaagcgggagtatgttgtccaagttctgatgaaggttatccccggaatgacagttgacattgcagtcaacgtgatgcaggaggcacatcacaacggcctggcagtggtgattgtgtgcgctcaggtggatgcagaagaccactgcatgcagctcagaggcaatggtcttctgagttcggttgagcctgcaagtgatggatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ClpS

Protein Analysis

158

Amino Acids

17.18

Weight (kDa)

8.62

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68660 AT1G68660
fragaria_vesca	FvH4_5g12540
malus_domestica	MD13G1045100.v1.1 MD14G1223300.v1.1 MD16G1046400.v1.1
prunus_persica	Prupe.1G306800_v2.0.a1 Prupe.1G306800_v2.0.a1 Prupe.1G306800_v2.0.a1 Prupe.5G218600_v2.0.a1
pyrus_communis	pycom06g18970
rosa_chinensis	RchiOBHm_Chr4g0435651 RchiOBHm_Chr7g0184811
rosa_laevigata	RLG00000004952 RLG00000006570 RLG00000006573
rosa_multiflora	Rmu_sc0000051.1_g000009 Rmu_ssc0000289.1_g000015
rosa_roxburghii	Rroxscaffold_3G00269360 Rroxscaffold_5G00376870
rosa_rugosa	Rorug06G0465100
rosa_samantha	Rh4AG342800 Rh4BG351200 Rh4CG365800 Rh4DG345500 Rh7AG077800 Rh7BG069500 Rh7CG070300 Rh7DG069700
rosa_wichuraiana	Rw4G029920 Rw7G005760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
AciI	CCGC	3 cut(s)	15, 236, 277
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	187, 369
AluBI	AGCT	1 cut(s)	424
AluI	AGCT	1 cut(s)	424
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	3 cut(s)	5, 253, 421
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AspLEI	GCGC	2 cut(s)	110, 392
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	2 cut(s)	24, 391
BbsI	GAAGAC	3 cut(s)	185, 414, 431
BbvI	GCAGC	2 cut(s)	240, 433
BccI	CCATC	1 cut(s)	461
BceAI	ACGGC	2 cut(s)	95, 382
BciT130I	CCWGG	2 cut(s)	189, 371
BcnI	CCSGG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	3 cut(s)	6, 254, 422
BlsI	GCNGC	3 cut(s)	7, 255, 423
Bme1390I	CCNGG	3 cut(s)	189, 315, 371
BmrFI	CCNGG	3 cut(s)	189, 315, 371
BmsI	GCATC	3 cut(s)	240, 336, 391
BpiI	GAAGAC	3 cut(s)	185, 414, 431
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse3DI	GCAATG	2 cut(s)	330, 439
BseBI	CCWGG	2 cut(s)	189, 371
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	2 cut(s)	406, 476
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMI	GCAATG	2 cut(s)	330, 439
BseMII	CTCAG	4 cut(s)	192, 407, 434, 439
BseXI	GCAGC	2 cut(s)	240, 433
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	369
BsiEI	CGRYCG	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	2 cut(s)	8, 217
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmFI	GGGAC	2 cut(s)	8, 217
BsnI	GGCC	1 cut(s)	369
BspACI	CCGC	3 cut(s)	15, 236, 277
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	4 cut(s)	193, 406, 435, 438
BsrDI	GCAATG	2 cut(s)	330, 439
BssECI	CCNNGG	1 cut(s)	313
Bst2UI	CCWGG	2 cut(s)	189, 371
Bst4CI	ACNGT	2 cut(s)	133, 325
BstC8I	GCNNGC	2 cut(s)	419, 459
BstDEI	CTNAG	4 cut(s)	201, 393, 425, 443
BstF5I	GGATG	2 cut(s)	406, 476
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	110, 392
BstMCI	CGRYCG	1 cut(s)	19
BstNI	CCWGG	2 cut(s)	189, 371
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	3 cut(s)	187, 313, 369
BstV1I	GCAGC	2 cut(s)	240, 433
BstV2I	GAAGAC	3 cut(s)	185, 414, 431
BsuRI	GGCC	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	406, 476
BtsI	GCAGTG	2 cut(s)	381, 412
BtsIMutI	CAGTG	3 cut(s)	129, 381, 412
Cac8I	GCNNGC	2 cut(s)	419, 459
CfoI	GCGC	2 cut(s)	110, 392
CsiI	ACCWGGT	1 cut(s)	187
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviAII	CATG	1 cut(s)	418
CviJI	RGCY	5 cut(s)	5, 166, 369, 424, 457
CviKI_1	RGCY	5 cut(s)	5, 166, 369, 424, 457
DdeI	CTNAG	4 cut(s)	201, 393, 425, 443
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	187, 369
FaeI	CATG	1 cut(s)	421
FaiI	YATR	6 cut(s)	13, 87, 173, 258, 285, 419
FaqI	GGGAC	2 cut(s)	8, 217
FatI	CATG	1 cut(s)	417
FauI	CCCGC	2 cut(s)	243, 270
Fnu4HI	GCNGC	3 cut(s)	6, 254, 422
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	3 cut(s)	6, 254, 422
GlaI	GCGC	2 cut(s)	109, 391
GluI	GCNGC	3 cut(s)	6, 254, 422
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	1 cut(s)	315
HhaI	GCGC	2 cut(s)	110, 392
Hin1II	CATG	1 cut(s)	421
Hin6I	GCGC	2 cut(s)	108, 390
HinP1I	GCGC	2 cut(s)	108, 390
HincII	GTYRAC	2 cut(s)	328, 340
HindII	GTYRAC	2 cut(s)	328, 340
HinfI	GANTC	2 cut(s)	21, 197
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	2 cut(s)	24, 391
Hpy166II	GTNNAC	2 cut(s)	328, 340
Hpy188I	TCNGA	5 cut(s)	105, 202, 300, 428, 444
Hpy188III	TCNNGA	2 cut(s)	63, 194
Hpy8I	GTNNAC	2 cut(s)	328, 340
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	2 cut(s)	133, 325
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	8 cut(s)	122, 256, 335, 349, 404, 417, 421, 461
HpyF3I	CTNAG	4 cut(s)	201, 393, 425, 443
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	1 cut(s)	421
HspAI	GCGC	2 cut(s)	108, 390
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	9 cut(s)	48, 174, 201, 328, 335, 356, 380, 383, 471
Lsp1109I	GCAGC	2 cut(s)	240, 433
LweI	GCATC	3 cut(s)	240, 336, 391
MabI	ACCWGGT	1 cut(s)	187
MaeII	ACGT	1 cut(s)	342
MboII	GAAGA	3 cut(s)	190, 419, 431
MlyI	GAGTC	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	6 cut(s)	36, 59, 140, 207, 346, 422
MseI	TTAA	1 cut(s)	270
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	3 cut(s)	189, 315, 371
MvaI	CCWGG	2 cut(s)	189, 371
NciI	CCSGG	1 cut(s)	315
NlaIII	CATG	1 cut(s)	421
NspI	RCATGY	1 cut(s)	421
PaeI	GCATGC	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	7, 255, 423
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	187, 369
PspGI	CCWGG	2 cut(s)	187, 369
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	3 cut(s)	6, 254, 422
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	3 cut(s)	189, 315, 371
SetI	ASST	6 cut(s)	151, 190, 309, 345, 399, 426
SexAI	ACCWGGT	1 cut(s)	187
SfaNI	GCATC	3 cut(s)	240, 336, 391
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
SphI	GCATGC	1 cut(s)	421
SsiI	CCGC	3 cut(s)	15, 236, 277
StyD4I	CCNGG	3 cut(s)	187, 313, 369
TaaI	ACNGT	2 cut(s)	133, 325
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	3 cut(s)	136, 381, 419
TseI	GCWGC	3 cut(s)	5, 253, 421
TspDTI	ATGAA	2 cut(s)	74, 317
TspRI	CASTG	3 cut(s)	136, 381, 419
XceI	RCATGY	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.