Rh4BG351200

ATP-dependent Clp protease adapter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004724
Physical Location & Seq
Reverse (-)
51219049 .. 51220423
1375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG351200.1

Sequence Viewer

Length: 477 bp
ATGGAGACTGCGATATGTGGGAGTCTGCCCCTCTCACCTAACCACGCCTTCAATCCTAAACCAGGAGACAAACACTTCCTTTGTAAAGGACCATGCACCAATCATTGCATTCCCATGGCTGTATCAACAGCAGCACCTGGTAAAGGAGGAGGATTGTTAGAAAGGCCTGTTATAGAGAAAACCACTCCCGCTCGTGAGTCTGAGTTTGATCTCAGGAAATCGAGGAAAATATCTCCTCCATACCGTGTAATATTGCACAATGACAACTTCAATAAACAGGAATATGTAGTCCAAGTGCTGATGAAGGTCATCTTGGGCATGACCCTTGACAATGCTGTTAATATCATGCAAGAAGCACACCACAATGGCTTGTCAGTGGTGATCATATGTGCTCAGGCTGATGCCGAAGAACACTGCACACAACTCAGGCACAATGGGCTTCTGAGTTCAATTGAACCCGCAAGTGGGGGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ClpS

Protein Analysis

158

Amino Acids

17.14

Weight (kDa)

7.07

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ClpS PF02617 78 - 144 1.1e-18 ATP-dependent Clp protease adaptor protein ClpS
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 191
AciI CCGC 2 cut(s) 189, 459
AfiI CCNNNNNNNGG 4 cut(s) 62, 143, 464, 465
AgsI TTSAA 4 cut(s) 52, 271, 450, 455
AjnI CCWGG 2 cut(s) 61, 136
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 1 cut(s) 60
AlwNI CAGNNNCTG 1 cut(s) 137
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 27, 391
AvaII GGWCC 1 cut(s) 89
BauI CACGAG 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 1 cut(s) 143
BciT130I CCWGG 2 cut(s) 63, 138
BclI TGATCA 1 cut(s) 381
BcoDI GTCTC 1 cut(s) 60
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 2 cut(s) 63, 138
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 89
BmrFI CCNGG 2 cut(s) 63, 138
BmsI GCATC 1 cut(s) 391
Bpu10I CCTNAGC 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 143, 464, 465
Bse3DI GCAATG 1 cut(s) 103
BseBI CCWGG 2 cut(s) 63, 138
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 476
BseLI CCNNNNNNNGG 4 cut(s) 62, 143, 464, 465
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 5 cut(s) 192, 226, 407, 434, 439
BseRI GAGGAG 2 cut(s) 162, 225
BseXI GCAGC 1 cut(s) 143
BsgI GTGCAG 1 cut(s) 400
BshFI GGCC 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 394
BslI CCNNNNNNNGG 4 cut(s) 62, 143, 464, 465
BsmAI GTCTC 1 cut(s) 60
BsmI GAATGC 1 cut(s) 108
BsnI GGCC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 394
Bsp143I GATC 2 cut(s) 208, 381
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 2 cut(s) 189, 459
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 5 cut(s) 193, 225, 406, 435, 438
BsrBI CCGCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 2 cut(s) 208, 381
BssSI CACGAG 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 63, 138
Bst4CI ACNGT 1 cut(s) 245
BstDEI CTNAG 5 cut(s) 201, 212, 393, 425, 443
BstDSI CCRYGG 1 cut(s) 114
BstENI CCTNNNNNAGG 2 cut(s) 60, 141
BstF5I GGATG 1 cut(s) 476
BstKTI GATC 2 cut(s) 211, 384
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 2 cut(s) 208, 381
BstMWI GCNNNNNNNGC 1 cut(s) 436
BstNI CCWGG 2 cut(s) 63, 138
BstSCI CCNGG 2 cut(s) 61, 136
BstV1I GCAGC 1 cut(s) 143
BsuRI GGCC 1 cut(s) 166
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 476
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 381, 412
CaiI CAGNNNCTG 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 89
CsiI ACCWGGT 1 cut(s) 136
CviAII CATG 4 cut(s) 93, 115, 319, 346
CviJI RGCY 5 cut(s) 119, 166, 369, 398, 439
CviKI_1 RGCY 5 cut(s) 119, 166, 369, 398, 439
DdeI CTNAG 5 cut(s) 201, 212, 393, 425, 443
DpnI GATC 2 cut(s) 210, 383
DpnII GATC 2 cut(s) 208, 381
Eco130I CCWWGG 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 89
EcoNI CCTNNNNNAGG 2 cut(s) 60, 141
EcoRII CCWGG 2 cut(s) 61, 136
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 4 cut(s) 96, 118, 322, 349
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FatI CATG 4 cut(s) 92, 114, 318, 345
FauI CCCGC 2 cut(s) 196, 466
FauNDI CATATG 1 cut(s) 386
FbaI TGATCA 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 166
Hin1II CATG 4 cut(s) 96, 118, 322, 349
HinfI GANTC 2 cut(s) 22, 197
HphI GGTGA 2 cut(s) 27, 391
Hpy188I TCNGA 2 cut(s) 202, 444
Hpy188III TCNNGA 2 cut(s) 194, 214
HpyAV CCTTC 2 cut(s) 58, 298
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 5 cut(s) 96, 108, 256, 349, 417
HpyF10VI GCNNNNNNNGC 1 cut(s) 436
HpyF3I CTNAG 5 cut(s) 201, 212, 393, 425, 443
Hsp92II CATG 4 cut(s) 96, 118, 322, 349
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 2 cut(s) 208, 381
LpnPI CCDG 9 cut(s) 48, 75, 123, 150, 180, 199, 263, 380, 412
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 391
MabI ACCWGGT 1 cut(s) 136
MalI GATC 2 cut(s) 210, 383
MbiI CCGCTC 1 cut(s) 191
MboI GATC 2 cut(s) 208, 381
MboII GAAGA 1 cut(s) 419
MfeI CAATTG 1 cut(s) 450
MhlI GDGCHC 1 cut(s) 394
MluCI AATT 1 cut(s) 450
MlyI GAGTC 2 cut(s) 31, 206
MnlI CCTC 5 cut(s) 41, 140, 143, 216, 246
MseI TTAA 2 cut(s) 339, 475
MslI CAYNNNNRTG 2 cut(s) 113, 363
MspR9I CCNGG 2 cut(s) 63, 138
MunI CAATTG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 108
MvaI CCWGG 2 cut(s) 63, 138
MwoI GCNNNNNNNGC 1 cut(s) 436
NcoI CCATGG 1 cut(s) 114
NdeI CATATG 1 cut(s) 386
NdeII GATC 2 cut(s) 208, 381
NlaIII CATG 4 cut(s) 96, 118, 322, 349
PceI AGGCCT 1 cut(s) 166
PctI GAATGC 1 cut(s) 108
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 2 cut(s) 30, 205
PpsI GAGTC 2 cut(s) 30, 205
Psp6I CCWGG 2 cut(s) 61, 136
PspGI CCWGG 2 cut(s) 61, 136
PspPI GGNCC 1 cut(s) 89
PstNI CAGNNNCTG 1 cut(s) 137
RseI CAYNNNNRTG 2 cut(s) 113, 363
SaqAI TTAA 2 cut(s) 339, 475
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 208, 381
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 2 cut(s) 31, 206
ScrFI CCNGG 2 cut(s) 63, 138
SduI GDGCHC 1 cut(s) 394
SetI ASST 3 cut(s) 40, 139, 309
SexAI ACCWGGT 1 cut(s) 136
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 1 cut(s) 89
SmiMI CAYNNNNRTG 2 cut(s) 113, 363
Sse9I AATT 1 cut(s) 450
SseBI AGGCCT 1 cut(s) 166
SsiI CCGC 2 cut(s) 189, 459
SspI AATATT 1 cut(s) 252
StuI AGGCCT 1 cut(s) 166
StyD4I CCNGG 2 cut(s) 61, 136
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 221
TasI AATT 1 cut(s) 450
Tru1I TTAA 2 cut(s) 339, 475
Tru9I TTAA 2 cut(s) 339, 475
TscAI CASTG 2 cut(s) 381, 419
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 317
TspRI CASTG 2 cut(s) 381, 419
VpaK11BI GGWCC 1 cut(s) 89
XagI CCTNNNNNAGG 2 cut(s) 60, 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.