Rh7DG069700

ATP-dependent Clp protease adapter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004724
Physical Location & Seq
Forward (+)
5371444 .. 5373881
2438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG069700.1

Sequence Viewer

Length: 432 bp
ATGATTGTGATTTATGTAGGAGGCGATAAACCCTATTTTCATAAACAATGCCCAAATCGGAGCGCCGTGATGACTGCAACAACCACTGTGCTTGGAAAAGGAGGTGGGTTGTTGGAGAAGCCAACCATAGAGAAGACCACACCTGGTCGTGATTCTGAGTTTGACTTGAGGAAATCAAAGAAAATGTCCCCGCCTTATCGTGTGATGCTGCATAATGATAACTTTAACAAGCGGGAGTATGTTGTCCAAGTTCTGATGAAGGTTATCCCCGGAATGACAGTTGACATTGCAGTCAACGTGATGCAGGAGGCACATCACAACGGCCTGGCAGTGGTGATTGTGTGCGCTCAGGTGGATGCAGAAGACCACTGCATGCAGCTCAGAGGCAATGGTCTTCTGAGTTCGGTTGAGCCTGCAAGTGATGGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ClpS

Protein Analysis

143

Amino Acids

15.69

Weight (kDa)

7.7

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ClpS PF02617 63 - 129 2.5e-17 ATP-dependent Clp protease adaptor protein ClpS
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 290
AciI CCGC 2 cut(s) 191, 232
AfiI CCNNNNNNNGG 1 cut(s) 331
AjnI CCWGG 2 cut(s) 142, 324
AluBI AGCT 1 cut(s) 379
AluI AGCT 1 cut(s) 379
AoxI GGCC 1 cut(s) 322
ApeKI GCWGC 2 cut(s) 208, 376
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspLEI GCGC 2 cut(s) 65, 347
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 346
BbsI GAAGAC 3 cut(s) 140, 369, 386
BbvI GCAGC 2 cut(s) 195, 388
BccI CCATC 1 cut(s) 416
BceAI ACGGC 2 cut(s) 50, 337
BciT130I CCWGG 2 cut(s) 144, 326
BcnI CCSGG 1 cut(s) 270
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 2 cut(s) 209, 377
BlsI GCNGC 2 cut(s) 210, 378
Bme1390I CCNGG 3 cut(s) 144, 270, 326
BmrFI CCNGG 3 cut(s) 144, 270, 326
BmsI GCATC 3 cut(s) 195, 291, 346
BpiI GAAGAC 3 cut(s) 140, 369, 386
Bpu10I CCTNAGC 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 268
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse3DI GCAATG 2 cut(s) 285, 394
BseBI CCWGG 2 cut(s) 144, 326
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 2 cut(s) 361, 431
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMI GCAATG 2 cut(s) 285, 394
BseMII CTCAG 4 cut(s) 147, 362, 389, 394
BseXI GCAGC 2 cut(s) 195, 388
BshFI GGCC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 1 cut(s) 324
BspACI CCGC 2 cut(s) 191, 232
BspANI GGCC 1 cut(s) 324
BspCNI CTCAG 4 cut(s) 148, 361, 390, 393
BsrDI GCAATG 2 cut(s) 285, 394
BssECI CCNNGG 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 144, 326
Bst4CI ACNGT 2 cut(s) 88, 280
BstC8I GCNNGC 2 cut(s) 374, 414
BstDEI CTNAG 4 cut(s) 156, 348, 380, 398
BstF5I GGATG 2 cut(s) 361, 431
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 2 cut(s) 65, 347
BstNI CCWGG 2 cut(s) 144, 326
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 3 cut(s) 142, 268, 324
BstV1I GCAGC 2 cut(s) 195, 388
BstV2I GAAGAC 3 cut(s) 140, 369, 386
BsuRI GGCC 1 cut(s) 324
BtsCI GGATG 2 cut(s) 361, 431
BtsI GCAGTG 2 cut(s) 336, 367
BtsIMutI CAGTG 3 cut(s) 84, 336, 367
Cac8I GCNNGC 2 cut(s) 374, 414
CfoI GCGC 2 cut(s) 65, 347
CsiI ACCWGGT 1 cut(s) 142
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 1 cut(s) 373
CviJI RGCY 4 cut(s) 121, 324, 379, 412
CviKI_1 RGCY 4 cut(s) 121, 324, 379, 412
DdeI CTNAG 4 cut(s) 156, 348, 380, 398
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
EcoRII CCWGG 2 cut(s) 142, 324
FaeI CATG 1 cut(s) 376
FaiI YATR 6 cut(s) 15, 42, 128, 213, 240, 374
FaqI GGGAC 1 cut(s) 172
FatI CATG 1 cut(s) 372
FauI CCCGC 2 cut(s) 198, 225
Fnu4HI GCNGC 2 cut(s) 209, 377
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 2 cut(s) 209, 377
GlaI GCGC 2 cut(s) 64, 346
GluI GCNGC 2 cut(s) 209, 377
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 1 cut(s) 324
HapII CCGG 1 cut(s) 270
HhaI GCGC 2 cut(s) 65, 347
Hin1II CATG 1 cut(s) 376
Hin6I GCGC 2 cut(s) 63, 345
HinP1I GCGC 2 cut(s) 63, 345
HincII GTYRAC 2 cut(s) 283, 295
HindII GTYRAC 2 cut(s) 283, 295
HinfI GANTC 1 cut(s) 152
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 2 cut(s) 283, 295
Hpy188I TCNGA 5 cut(s) 60, 157, 255, 383, 399
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 2 cut(s) 283, 295
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 2 cut(s) 88, 280
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 8 cut(s) 77, 211, 290, 304, 359, 372, 376, 416
HpyF3I CTNAG 4 cut(s) 156, 348, 380, 398
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 1 cut(s) 376
HspAI GCGC 2 cut(s) 63, 345
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 8 cut(s) 129, 156, 283, 290, 311, 335, 338, 426
Lsp1109I GCAGC 2 cut(s) 195, 388
LweI GCATC 3 cut(s) 195, 291, 346
MabI ACCWGGT 1 cut(s) 142
MaeII ACGT 1 cut(s) 297
MboII GAAGA 3 cut(s) 145, 374, 386
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 5 cut(s) 14, 95, 162, 301, 377
MseI TTAA 1 cut(s) 225
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 3 cut(s) 144, 270, 326
MvaI CCWGG 2 cut(s) 144, 326
NciI CCSGG 1 cut(s) 270
NlaIII CATG 1 cut(s) 376
NspI RCATGY 1 cut(s) 376
PaeI GCATGC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 2 cut(s) 210, 378
Psp6I CCWGG 2 cut(s) 142, 324
PspGI CCWGG 2 cut(s) 142, 324
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 2 cut(s) 209, 377
ScrFI CCNGG 3 cut(s) 144, 270, 326
SetI ASST 6 cut(s) 106, 145, 264, 300, 354, 381
SexAI ACCWGGT 1 cut(s) 142
SfaNI GCATC 3 cut(s) 195, 291, 346
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SphI GCATGC 1 cut(s) 376
SsiI CCGC 2 cut(s) 191, 232
StyD4I CCNGG 3 cut(s) 142, 268, 324
TaaI ACNGT 2 cut(s) 88, 280
TaiI ACGT 1 cut(s) 300
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 3 cut(s) 91, 336, 374
TseI GCWGC 2 cut(s) 208, 376
TspDTI ATGAA 2 cut(s) 29, 272
TspRI CASTG 3 cut(s) 91, 336, 374
XceI RCATGY 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.