AT1G71760

MRN-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009611
Physical Location & Seq
Forward (+)
26989318 .. 26990617
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71760.2

Sequence Viewer

Length: 780 bp
ATGGCGAGTACTCTCTTCATCGCTCTCCAATGTTACGAGTGTTCAACTATGCAGGTGAAGCAGAAGAAGAAAAGTAGTAACAAGTGGGTTTGTGTGATATGCAATCAGAAGCAATCAGTGAAAAAGGTGTTTGCTCAAGGTTATAAGGCTAAGGAGCTTCGTTTCTTTGTCCAATCGTTTAATATGTCTCGCAAAGTTGCCGATGAAGAGGCACATGCTGTTGGAGATTCGTTTCCAGAGGTTTATGTTGAAGGAGAGGTTAATGAGGAGGTTAATGGAACGAAGAAGCGATCTGATTGGAGTCAATACCTCGATTTCGATTCAGTAAATGATCGCCGGAGATTAGCTGGAGAAGAAGACGATGTGAAGATTGTCACTGAGATGCCAAGCAATATGTTCAAAAGGCCAAAGCTGAACAAAGAGTCTAATGCTGGTGGATCATCATCAAATACAGGAGGTGAGAATAAAGACAGTAATGAGATCTTCAAGCCTTCTTTCTCCAGACGCAGCATCAAAAAGCCGGATTTTCGATCCGATGAAGTAGTGACGAGGAAGAAGGATATGGAAGAGAGGAATCTAGAGTCAGAAAGAGTTACTAAGCCAGCTTCGAAATGGGACGCCTACTTAATCGATGACGAAGGAGAACACCAAGCACCACCGCGATTTGGTGTTAAAAAGGCCTTGAAGGATGACGAAGTAGGAGGATGGGACAGAGCAGTAATGGAGATAAATACGGAATATCAGATAGTAGACGACGAGGTACATCCAGATTTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRNIP

Protein Analysis

259

Amino Acids

29.74

Weight (kDa)

5.66

Isoelectric Point (pI)

49.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRNIP PF15749 9 - 91 9.5e-20 MRN-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 144
AarI CACCTGC 1 cut(s) 43
Acc36I ACCTGC 1 cut(s) 43
AccI GTMKAC 1 cut(s) 750
AccII CGCG 1 cut(s) 661
AciI CCGC 1 cut(s) 659
AclWI GGATC 2 cut(s) 445, 525
AcyI GRCGYC 1 cut(s) 618
AfaI GTAC 2 cut(s) 10, 762
AfiI CCNNNNNNNGG 1 cut(s) 665
AgsI TTSAA 5 cut(s) 45, 251, 400, 487, 685
AluBI AGCT 4 cut(s) 157, 347, 412, 605
AluI AGCT 4 cut(s) 157, 347, 412, 605
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 2 cut(s) 445, 525
AoxI GGCC 2 cut(s) 404, 678
ApeKI GCWGC 1 cut(s) 507
AsuHPI GGTGA 2 cut(s) 67, 470
AsuII TTCGAA 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 519
BccI CCATC 1 cut(s) 699
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 578
BfuAI ACCTGC 1 cut(s) 43
BglII AGATCT 1 cut(s) 480
BisI GCNGC 1 cut(s) 508
BlsI GCNGC 1 cut(s) 509
BmcAI AGTACT 1 cut(s) 10
BmsI GCATC 2 cut(s) 372, 519
BpiI GAAGAC 1 cut(s) 363
BpmI CTGGAG 2 cut(s) 369, 484
Bpu10I CCTNAGC 1 cut(s) 150
Bpu14I TTCGAA 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 120
Bsa29I ATCGAT 1 cut(s) 630
BsaBI GATNNNNATC 1 cut(s) 442
BsaHI GRCGYC 1 cut(s) 618
Bsc4I CCNNNNNNNGG 1 cut(s) 665
Bse8I GATNNNNATC 1 cut(s) 442
BseCI ATCGAT 1 cut(s) 630
BseGI GGATG 3 cut(s) 694, 710, 763
BseJI GATNNNNATC 1 cut(s) 442
BseLI CCNNNNNNNGG 1 cut(s) 665
BseMII CTCAG 1 cut(s) 369
BseRI GAGGAG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 519
Bsh1236I CGCG 1 cut(s) 661
BshFI GGCC 2 cut(s) 406, 680
BshVI ATCGAT 1 cut(s) 630
BsiSI CCGG 2 cut(s) 337, 521
BslFI GGGAC 2 cut(s) 629, 722
BslI CCNNNNNNNGG 1 cut(s) 665
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 2 cut(s) 629, 722
BsnI GGCC 2 cut(s) 406, 680
Bsp119I TTCGAA 1 cut(s) 608
Bsp143I GATC 5 cut(s) 290, 331, 437, 480, 530
BspACI CCGC 1 cut(s) 659
BspANI GGCC 2 cut(s) 406, 680
BspCNI CTCAG 1 cut(s) 370
BspDI ATCGAT 1 cut(s) 630
BspFNI CGCG 1 cut(s) 661
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 2 cut(s) 445, 525
BspT104I TTCGAA 1 cut(s) 608
BssMI GATC 5 cut(s) 290, 331, 437, 480, 530
BssNI GRCGYC 1 cut(s) 618
Bst4CI ACNGT 1 cut(s) 473
Bst6I CTCTTC 3 cut(s) 20, 201, 561
BstACI GRCGYC 1 cut(s) 618
BstBI TTCGAA 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 603
BstDEI CTNAG 3 cut(s) 150, 378, 597
BstF5I GGATG 3 cut(s) 694, 710, 763
BstFNI CGCG 1 cut(s) 661
BstKTI GATC 5 cut(s) 293, 334, 440, 483, 533
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 5 cut(s) 290, 331, 437, 480, 530
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 218
BstUI CGCG 1 cut(s) 661
BstV1I GCAGC 1 cut(s) 519
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 480
BstYI RGATCY 1 cut(s) 480
Bsu15I ATCGAT 1 cut(s) 630
BsuRI GGCC 2 cut(s) 406, 680
BsuTUI ATCGAT 1 cut(s) 630
BtgZI GCGATG 1 cut(s) 4
BtsCI GGATG 3 cut(s) 694, 710, 763
BtsIMutI CAGTG 2 cut(s) 123, 375
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 603
ClaI ATCGAT 1 cut(s) 630
CseI GACGC 2 cut(s) 513, 626
Csp6I GTAC 2 cut(s) 9, 761
CviAII CATG 2 cut(s) 215, 775
CviQI GTAC 2 cut(s) 9, 761
DdeI CTNAG 3 cut(s) 150, 378, 597
DpnI GATC 5 cut(s) 292, 333, 439, 482, 532
DpnII GATC 5 cut(s) 290, 331, 437, 480, 530
Eam1104I CTCTTC 3 cut(s) 20, 201, 561
EarI CTCTTC 3 cut(s) 20, 201, 561
Eco147I AGGCCT 1 cut(s) 680
FaeI CATG 2 cut(s) 218, 778
FaiI YATR 9 cut(s) 50, 100, 144, 185, 216, 246, 395, 563, 776
FaqI GGGAC 2 cut(s) 629, 722
FatI CATG 2 cut(s) 214, 774
FblI GTMKAC 1 cut(s) 750
Fnu4HI GCNGC 1 cut(s) 508
FokI GGATG 3 cut(s) 701, 717, 750
Fsp4HI GCNGC 1 cut(s) 508
FspBI CTAG 1 cut(s) 578
GluI GCNGC 1 cut(s) 508
GsuI CTGGAG 2 cut(s) 369, 484
HaeIII GGCC 2 cut(s) 406, 680
HapII CCGG 2 cut(s) 337, 521
HgaI GACGC 2 cut(s) 513, 626
Hin1I GRCGYC 1 cut(s) 618
Hin1II CATG 2 cut(s) 218, 778
HinfI GANTC 6 cut(s) 227, 301, 320, 422, 574, 581
HpaII CCGG 2 cut(s) 337, 521
HphI GGTGA 2 cut(s) 67, 470
Hpy166II GTNNAC 1 cut(s) 751
Hpy188I TCNGA 5 cut(s) 108, 295, 535, 586, 744
Hpy188III TCNNGA 4 cut(s) 236, 501, 578, 767
Hpy8I GTNNAC 1 cut(s) 751
Hpy99I CGWCG 1 cut(s) 758
HpyAV CCTTC 5 cut(s) 245, 501, 550, 632, 679
HpyCH4III ACNGT 1 cut(s) 473
HpyCH4V TGCA 2 cut(s) 52, 102
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 3 cut(s) 150, 378, 597
Hsp92I GRCGYC 1 cut(s) 618
Hsp92II CATG 2 cut(s) 218, 778
Kzo9I GATC 5 cut(s) 290, 331, 437, 480, 530
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 9 cut(s) 38, 249, 333, 350, 417, 438, 514, 534, 615
Lsp1109I GCAGC 1 cut(s) 519
LweI GCATC 2 cut(s) 372, 519
MaeI CTAG 1 cut(s) 578
MaeIII GTNAC 5 cut(s) 32, 77, 373, 544, 592
MalI GATC 5 cut(s) 292, 333, 439, 482, 532
MboI GATC 5 cut(s) 290, 331, 437, 480, 530
MflI RGATCY 1 cut(s) 480
MlyI GAGTC 3 cut(s) 310, 431, 590
MmeI TCCRAC 1 cut(s) 202
MseI TTAA 5 cut(s) 180, 261, 273, 626, 672
MslI CAYNNNNRTG 1 cut(s) 380
MspI CCGG 2 cut(s) 337, 521
MvnI CGCG 1 cut(s) 661
MwoI GCNNNNNNNGC 1 cut(s) 58
NdeII GATC 5 cut(s) 290, 331, 437, 480, 530
NlaIII CATG 2 cut(s) 218, 778
NmuCI GTSAC 2 cut(s) 373, 544
NspI RCATGY 1 cut(s) 218
NspV TTCGAA 1 cut(s) 608
PaqCI CACCTGC 1 cut(s) 43
PceI AGGCCT 1 cut(s) 680
PfeI GAWTC 3 cut(s) 227, 320, 574
PkrI GCNGC 1 cut(s) 509
PleI GAGTC 3 cut(s) 309, 430, 589
PpsI GAGTC 3 cut(s) 309, 430, 589
PsiI TTATAA 1 cut(s) 144
PsuI RGATCY 1 cut(s) 480
RsaI GTAC 2 cut(s) 10, 762
RsaNI GTAC 2 cut(s) 9, 761
RseI CAYNNNNRTG 1 cut(s) 380
SaqAI TTAA 5 cut(s) 180, 261, 273, 626, 672
SatI GCNGC 1 cut(s) 508
Sau3AI GATC 5 cut(s) 290, 331, 437, 480, 530
ScaI AGTACT 1 cut(s) 10
SchI GAGTC 3 cut(s) 310, 431, 590
SfaNI GCATC 2 cut(s) 372, 519
SfuI TTCGAA 1 cut(s) 608
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
SseBI AGGCCT 1 cut(s) 680
SsiI CCGC 1 cut(s) 659
SspMI CTAG 1 cut(s) 578
StuI AGGCCT 1 cut(s) 680
TaaI ACNGT 1 cut(s) 473
TaqI TCGA 5 cut(s) 312, 318, 529, 608, 630
TatI WGTACW 1 cut(s) 8
TfiI GAWTC 3 cut(s) 227, 320, 574
Tru1I TTAA 5 cut(s) 180, 261, 273, 626, 672
Tru9I TTAA 5 cut(s) 180, 261, 273, 626, 672
TscAI CASTG 2 cut(s) 123, 382
TseFI GTSAC 2 cut(s) 373, 544
TseI GCWGC 1 cut(s) 507
Tsp45I GTSAC 2 cut(s) 373, 544
TspDTI ATGAA 4 cut(s) 7, 219, 552, 763
TspGWI ACGGA 1 cut(s) 749
TspRI CASTG 2 cut(s) 123, 382
XbaI TCTAGA 1 cut(s) 577
XceI RCATGY 1 cut(s) 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 609
XmiI GTMKAC 1 cut(s) 750
XspI CTAG 1 cut(s) 578
ZrmI AGTACT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.