FvH4_2g12850

MRN-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009611
Physical Location & Seq
Reverse (-)
11290931 .. 11292940
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12850.t1

Sequence Viewer

Length: 351 bp
ATGTCCACCATCTTCTACGCCGTTCAGTGCTGCCAATGCTCCACCATGCAGGTAAAGCAGAGGAAGCAGAGCAGTAAGAACAACAAGTGGACTTGTGTGGTCTGCAATCAGAAGCAGTCTGCACGCAAGGTGTTCGCTGAAAGTACCATGGCTCGAGACCTCCGCCCTTTCGTCCAATCCTCCAACATGTCTCGTCAATTCACTCAAAATCAACAGCAACACCACGAGCATGCCCTTGTTTCTGATGTTCATGAGTGCCATACCCAAAAGAAAAGACGAACTGATTGGACCCAGTACCTGGATGCCGAGGCCGATCAGCGCAGCGATATGAAGCAAGGAGATGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRNIP

Protein Analysis

117

Amino Acids

13.65

Weight (kDa)

8.81

Isoelectric Point (pI)

65.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRNIP PF15749 8 - 94 2.8e-17 MRN-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 40
AccB7I CCANNNNNTGG 1 cut(s) 298
AciI CCGC 1 cut(s) 163
AfaI GTAC 2 cut(s) 145, 296
AfiI CCNNNNNNNGG 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 186
AjnI CCWGG 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 150, 195
AlwNI CAGNNNCTG 1 cut(s) 298
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 2 cut(s) 30, 321
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 288
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 1 cut(s) 288
BauI CACGAG 1 cut(s) 224
BbvI GCAGC 2 cut(s) 17, 333
BccI CCATC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 5
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 1 cut(s) 299
BcoDI GTCTC 2 cut(s) 150, 195
BfuAI ACCTGC 1 cut(s) 40
BisI GCNGC 2 cut(s) 31, 322
BlsI GCNGC 2 cut(s) 32, 323
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 288
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 299
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 147, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 292
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 147, 306
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 298
BseNI ACTGG 1 cut(s) 292
BseXI GCAGC 2 cut(s) 17, 333
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 1 cut(s) 311
BsiHKCI CYCGRG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 2 cut(s) 150, 195
BsnI GGCC 1 cut(s) 311
Bso31I GGTCTC 1 cut(s) 150
BsoBI CYCGRG 1 cut(s) 153
Bsp143I GATC 1 cut(s) 313
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 1 cut(s) 163
BspANI GGCC 1 cut(s) 311
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 290
BspMI ACCTGC 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 292
BssECI CCNNGG 2 cut(s) 147, 306
BssMI GATC 1 cut(s) 313
BssSI CACGAG 1 cut(s) 224
BssT1I CCWWGG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 224
Bst2UI CCWGG 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 124, 231
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 307
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 2 cut(s) 150, 195
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 3 cut(s) 36, 55, 64
BstNI CCWGG 1 cut(s) 299
BstNSI RCATGY 2 cut(s) 190, 233
BstSCI CCNGG 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 17, 333
BsuRI GGCC 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 124, 231
CaiI CAGNNNCTG 1 cut(s) 298
CciI TCATGA 1 cut(s) 250
CfoI GCGC 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 288
Csp6I GTAC 2 cut(s) 144, 295
CviAII CATG 5 cut(s) 46, 148, 187, 230, 251
CviJI RGCY 2 cut(s) 152, 311
CviKI_1 RGCY 2 cut(s) 152, 311
CviQI GTAC 2 cut(s) 144, 295
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
EciI GGCGGA 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 5 cut(s) 49, 151, 190, 233, 254
FaiI YATR 7 cut(s) 47, 149, 188, 231, 252, 261, 329
FatI CATG 5 cut(s) 45, 147, 186, 229, 250
Fnu4HI GCNGC 2 cut(s) 31, 322
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 31, 322
GlaI GCGC 1 cut(s) 320
GluI GCNGC 2 cut(s) 31, 322
HaeIII GGCC 1 cut(s) 311
HhaI GCGC 1 cut(s) 321
Hin1II CATG 5 cut(s) 49, 151, 190, 233, 254
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
Hpy166II GTNNAC 2 cut(s) 6, 90
Hpy188I TCNGA 2 cut(s) 111, 244
Hpy188III TCNNGA 2 cut(s) 155, 251
Hpy8I GTNNAC 2 cut(s) 6, 90
HpyCH4V TGCA 3 cut(s) 49, 105, 122
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 55, 64
Hsp92II CATG 5 cut(s) 49, 151, 190, 233, 254
HspAI GCGC 1 cut(s) 319
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 4 cut(s) 35, 284, 305, 311
Lsp1109I GCAGC 2 cut(s) 17, 333
LweI GCATC 1 cut(s) 292
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 1 cut(s) 4
MluCI AATT 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 4 cut(s) 54, 170, 190, 301
MslI CAYNNNNRTG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 299
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 36, 55, 64
NcoI CCATGG 1 cut(s) 147
NdeII GATC 1 cut(s) 313
NlaIII CATG 5 cut(s) 49, 151, 190, 233, 254
NlaIV GGNNCC 1 cut(s) 290
NmeAIII GCCGAG 1 cut(s) 331
NspI RCATGY 2 cut(s) 190, 233
PaeI GCATGC 1 cut(s) 233
PaeR7I CTCGAG 1 cut(s) 153
PagI TCATGA 1 cut(s) 250
PciI ACATGT 1 cut(s) 186
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 2 cut(s) 32, 323
PscI ACATGT 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 290
PspPI GGNCC 1 cut(s) 288
PstNI CAGNNNCTG 1 cut(s) 298
RsaI GTAC 2 cut(s) 145, 296
RsaNI GTAC 2 cut(s) 144, 295
RseI CAYNNNNRTG 1 cut(s) 228
SatI GCNGC 2 cut(s) 31, 322
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 1 cut(s) 288
ScrFI CCNGG 1 cut(s) 299
SetI ASST 4 cut(s) 54, 132, 162, 300
SfaNI GCATC 1 cut(s) 292
Sfr274I CTCGAG 1 cut(s) 153
SinI GGWCC 1 cut(s) 288
SlaI CTCGAG 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
SphI GCATGC 1 cut(s) 233
Sse9I AATT 1 cut(s) 197
SsiI CCGC 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 1 cut(s) 147
TaqI TCGA 1 cut(s) 154
TasI AATT 1 cut(s) 197
TscAI CASTG 1 cut(s) 32
TseI GCWGC 2 cut(s) 30, 321
TspDTI ATGAA 2 cut(s) 239, 344
TspRI CASTG 1 cut(s) 32
Van91I CCANNNNNTGG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 288
XceI RCATGY 2 cut(s) 190, 233
XhoI CTCGAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.