Rh6DG188200

MRN-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0009611
Physical Location & Seq
Reverse (-)
33506699 .. 33508476
1778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG188200.1

Sequence Viewer

Length: 801 bp
ATGTCCACCATCTTCTATGCCGTTCAGTGCTGCCAATGCTCCACCATGCAGGTGAAGCAGAGGAGTAAGAACAACAAGTGGACTTGTGTGGTCTGCAATCAGAAGCAGTCTGCACGCAAGGTGTTCGCTGAAAGTCCCATGGCCAGAGACCTCCGCCCCTTCGTCCAATCCTCCAACATGTCCCGCCAATTCACCGACGAAAAACAACTCCACGATCTTGCCCTTGTTTCTGATGTTCATGAGTGCAATACCCAAAAGAGAAGACGAACTGATTGGACCGAGTACCTGGATGCTGAGGCCGATCAGCGTGGTGGTTTTGAGCCCCAAGTTGTAACTGAGTTGCCGCCGGAGTTAATCAAGAAACCAAAGCTGAACAAATACTATGATGCTTCTGGGTCTGCGGATACAGAAAATGGTGGTGTCTATGAGCTTCAAAATCGTAGACCAGTCATCTCTAAGAGGGATTCCAACAAACATGTGCACTCCCCCGCAGATGTGGAGAACTGGAGGTGCGAGTTGACAATAAACAAGAACACTTCAAATTGGAGCCATCTCATGATGCAAGATGACAAGGAATCAAGAAAATTGCATGCGACAAAGGCTTCACTTACAGGTGCTTCAAAGTGGAATGACTACGTAACCGAGGATGATAATGATGGCTTGAGAATCATCAACAGAAAAAGCCGTGAAGAGAATACAGAGCAATGGAGTAATGAAACAATAGCAAACTATGAATATGAGACGGTAACAACTGATGACAGGGTAGAAGATGACATCCATCCTGATTTCTTGCAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRNIP

Protein Analysis

266

Amino Acids

30.86

Weight (kDa)

5.72

Isoelectric Point (pI)

54.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRNIP PF15749 8 - 87 2e-14 MRN-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 40
AccI GTMKAC 1 cut(s) 442
AciI CCGC 5 cut(s) 154, 184, 344, 401, 489
AcoI YGGCCR 1 cut(s) 141
AfaI GTAC 1 cut(s) 284
AflIII ACRYGT 2 cut(s) 177, 475
AgsI TTSAA 3 cut(s) 434, 540, 621
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 2 cut(s) 370, 430
AluI AGCT 2 cut(s) 370, 430
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 2 cut(s) 141, 734
Alw44I GTGCAC 1 cut(s) 479
AoxI GGCC 2 cut(s) 141, 297
ApaLI GTGCAC 1 cut(s) 479
ApeKI GCWGC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 2 cut(s) 64, 184
AvaII GGWCC 1 cut(s) 276
BaeGI GKGCMC 1 cut(s) 483
BalI TGGCCA 1 cut(s) 143
BanII GRGCYC 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 483
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 17
BccI CCATC 4 cut(s) 17, 558, 650, 786
BceAI ACGGC 2 cut(s) 5, 669
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 1 cut(s) 287
BciVI GTATCC 1 cut(s) 397
BcoDI GTCTC 2 cut(s) 141, 734
BfuAI ACCTGC 1 cut(s) 40
BfuI GTATCC 1 cut(s) 397
BisI GCNGC 2 cut(s) 31, 344
BlsI GCNGC 2 cut(s) 32, 345
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 548
BmrFI CCNGG 1 cut(s) 287
BmsI GCATC 3 cut(s) 280, 376, 549
BpiI GAAGAC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 526
Bpu10I CCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 682
BsaAI YACGTR 1 cut(s) 637
BsaI GGTCTC 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 138, 642
Bse1I ACTGG 2 cut(s) 446, 509
Bse3DI GCAATG 1 cut(s) 710
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 2 cut(s) 138, 642
BseGI GGATG 4 cut(s) 295, 652, 774, 778
BseMI GCAATG 1 cut(s) 710
BseMII CTCAG 2 cut(s) 285, 327
BseNI ACTGG 2 cut(s) 446, 509
BseRI GAGGAG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 483
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 2 cut(s) 143, 299
BsiHKAI GWGCWC 1 cut(s) 483
BsiSI CCGG 1 cut(s) 347
BslFI GGGAC 2 cut(s) 120, 166
BsmAI GTCTC 2 cut(s) 141, 734
BsmBI CGTCTC 1 cut(s) 734
BsmFI GGGAC 2 cut(s) 120, 166
BsnI GGCC 2 cut(s) 143, 299
Bso31I GGTCTC 1 cut(s) 141
Bsp1286I GDGCHC 2 cut(s) 324, 483
Bsp143I GATC 2 cut(s) 214, 301
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 5 cut(s) 154, 184, 344, 401, 489
BspANI GGCC 2 cut(s) 143, 299
BspCNI CTCAG 2 cut(s) 286, 328
BspHI TCATGA 2 cut(s) 238, 555
BspLI GGNNCC 1 cut(s) 548
BspMI ACCTGC 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 710
BsrI ACTGG 2 cut(s) 446, 509
BssECI CCNNGG 2 cut(s) 138, 642
BssMI GATC 2 cut(s) 214, 301
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 1 cut(s) 745
Bst6I CTCTTC 1 cut(s) 684
BstBAI YACGTR 1 cut(s) 637
BstC8I GCNNGC 2 cut(s) 115, 591
BstDEI CTNAG 3 cut(s) 294, 336, 456
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 4 cut(s) 295, 652, 774, 778
BstKTI GATC 2 cut(s) 217, 304
BstMAI GTCTC 2 cut(s) 141, 734
BstMBI GATC 2 cut(s) 214, 301
BstMWI GCNNNNNNNGC 3 cut(s) 36, 55, 599
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 3 cut(s) 181, 479, 593
BstSCI CCNGG 1 cut(s) 285
BstSLI GKGCMC 1 cut(s) 483
BstSNI TACGTA 1 cut(s) 637
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 268
BsuI GTATCC 1 cut(s) 397
BsuRI GGCC 2 cut(s) 143, 299
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 4 cut(s) 295, 652, 774, 778
BtsIMutI CAGTG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 115, 591
CciI TCATGA 2 cut(s) 238, 555
Cfr13I GGNCC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 283
CviAII CATG 7 cut(s) 46, 139, 178, 239, 476, 556, 590
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 3 cut(s) 294, 336, 456
DpnI GATC 2 cut(s) 216, 303
DpnII GATC 2 cut(s) 214, 301
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
EciI GGCGGA 1 cut(s) 143
Eco105I TACGTA 1 cut(s) 637
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 734
FaeI CATG 7 cut(s) 49, 142, 181, 242, 479, 559, 593
FaqI GGGAC 2 cut(s) 120, 166
FatI CATG 7 cut(s) 45, 138, 177, 238, 475, 555, 589
FauI CCCGC 2 cut(s) 191, 496
FblI GTMKAC 1 cut(s) 442
Fnu4HI GCNGC 2 cut(s) 31, 344
FokI GGATG 4 cut(s) 302, 659, 761, 765
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 2 cut(s) 31, 344
GluI GCNGC 2 cut(s) 31, 344
GsuI CTGGAG 1 cut(s) 526
HaeIII GGCC 2 cut(s) 143, 299
HapII CCGG 1 cut(s) 347
Hin1II CATG 7 cut(s) 49, 142, 181, 242, 479, 559, 593
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HinfI GANTC 3 cut(s) 464, 575, 666
HpaII CCGG 1 cut(s) 347
HphI GGTGA 2 cut(s) 64, 184
Hpy166II GTNNAC 5 cut(s) 6, 81, 443, 481, 519
Hpy188I TCNGA 2 cut(s) 102, 232
Hpy188III TCNNGA 5 cut(s) 239, 358, 556, 579, 782
Hpy8I GTNNAC 5 cut(s) 6, 81, 443, 481, 519
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 745
HpyCH4IV ACGT 1 cut(s) 636
HpyCH4V TGCA 8 cut(s) 49, 96, 113, 246, 481, 562, 589, 793
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 55, 599
HpyF3I CTNAG 3 cut(s) 294, 336, 456
HpySE526I ACGT 1 cut(s) 636
Hsp92II CATG 7 cut(s) 49, 142, 181, 242, 479, 559, 593
Kzo9I GATC 2 cut(s) 214, 301
LmnI GCTCC 2 cut(s) 44, 546
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 3 cut(s) 280, 376, 549
MaeII ACGT 1 cut(s) 636
MaeIII GTNAC 3 cut(s) 331, 637, 745
MalI GATC 2 cut(s) 216, 303
MboI GATC 2 cut(s) 214, 301
MboII GAAGA 4 cut(s) 4, 273, 701, 779
MhlI GDGCHC 2 cut(s) 324, 483
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 3 cut(s) 188, 541, 584
MluNI TGGCCA 1 cut(s) 143
MmeI TCCRAC 2 cut(s) 198, 492
MnlI CCTC 7 cut(s) 54, 161, 181, 289, 453, 501, 637
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MseI TTAA 1 cut(s) 353
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 143
MspI CCGG 1 cut(s) 347
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 3 cut(s) 36, 55, 599
NcoI CCATGG 1 cut(s) 138
NdeII GATC 2 cut(s) 214, 301
NlaIII CATG 7 cut(s) 49, 142, 181, 242, 479, 559, 593
NlaIV GGNNCC 1 cut(s) 548
NspI RCATGY 3 cut(s) 181, 479, 593
PaeI GCATGC 1 cut(s) 593
PagI TCATGA 2 cut(s) 238, 555
PaqCI CACCTGC 1 cut(s) 40
PciI ACATGT 2 cut(s) 177, 475
PfeI GAWTC 3 cut(s) 464, 575, 666
PkrI GCNGC 2 cut(s) 32, 345
Ppu21I YACGTR 1 cut(s) 637
PscI ACATGT 2 cut(s) 177, 475
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 548
PspPI GGNCC 1 cut(s) 276
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 2 cut(s) 31, 344
Sau3AI GATC 2 cut(s) 214, 301
Sau96I GGNCC 1 cut(s) 276
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 2 cut(s) 324, 483
SetI ASST 9 cut(s) 54, 123, 153, 288, 372, 432, 512, 616, 639
SfaNI GCATC 3 cut(s) 280, 376, 549
SinI GGWCC 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 661
SmoI CTYRAG 1 cut(s) 661
SnaBI TACGTA 1 cut(s) 637
SphI GCATGC 1 cut(s) 593
Sse9I AATT 3 cut(s) 188, 541, 584
SsiI CCGC 5 cut(s) 154, 184, 344, 401, 489
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 745
TaiI ACGT 1 cut(s) 639
TaqII GACCGA 1 cut(s) 293
TasI AATT 3 cut(s) 188, 541, 584
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 3 cut(s) 464, 575, 666
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TscAI CASTG 1 cut(s) 32
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 3 cut(s) 227, 729, 747
TspRI CASTG 1 cut(s) 32
VneI GTGCAC 1 cut(s) 479
VpaK11BI GGWCC 1 cut(s) 276
XceI RCATGY 3 cut(s) 181, 479, 593
XmiI GTMKAC 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.