Rh6CG196200

MRN-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0009611
Physical Location & Seq
Reverse (-)
32583611 .. 32585383
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG196200.1

Sequence Viewer

Length: 810 bp
ATGTCCACCATCTTCTATGCCGTTCAGTGCTGCCAATGCTCCACCATGCAGGTGAAGCAGAGGAAGCAGAGGAGTAAGAACAACAAGTGGACTTGTGTGGTCTGCAATCAGAAGCAGTCTGCACGCAAGGTGTTCGCTGAAAGTCCCATGGCCAGAGACCTCCGCCCCTTCGTCCAATCCTCCAACATGTCCCGCCAATTCACCGACGAAAAACAACACCACGATCTTGCCCTTGTTTCTGATGTTCATGAGTGCAATACCCAAAAGAGAAGACGAACTGATTGGACCGAGTACCTGGATGCTGAGGCCGATCAGCGTGGTGGTTTTGAGCCCCAAGTTGTAACTGAGTTGCCGCCGGAGTTAGTCAAGAAACCAAAGCTGAACAAATACTATGATGCTTCTGGGTCTGCGGATACAGAAAATGGTGGTGTCTATGAGCTTCAAAATCGTAGACCAGTTATCTCTAAGAGGGATTCCAACAAACATGTGCACCCCCCCGCAGATGTGGAGAACTGGAGGTGCGAGTTGACAATAAACAAGACCACTTCAAATTGGGGCCATCTCATGATGCAAGATGACAAGGAATCAAGAAAATTGCATGCGACAAAGGCTTCACTTACAGGTGCTTCAAAGTGGAATGACTACGTAACCGAGGATGATAATAATGGCTTGAGAATCATCAACAGAAAAAGCTGTGAAGAGAATACAGAGCAATGGAGTAATGAAACAATAGCAAACTATGAATATGAGACAGTAACAACTGATGAGAGGGTAGAAGATGACATCCATCCTGATTTCTTGCAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRNIP

Protein Analysis

269

Amino Acids

31.21

Weight (kDa)

6.1

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRNIP PF15749 8 - 91 4.4e-13 MRN-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 40
AccI GTMKAC 1 cut(s) 451
AciI CCGC 5 cut(s) 163, 193, 353, 410, 498
AcoI YGGCCR 1 cut(s) 150
AfaI GTAC 1 cut(s) 293
AflIII ACRYGT 2 cut(s) 186, 484
AgsI TTSAA 3 cut(s) 443, 549, 630
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 3 cut(s) 379, 439, 693
AluI AGCT 3 cut(s) 379, 439, 693
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 2 cut(s) 150, 743
Alw44I GTGCAC 1 cut(s) 488
AoxI GGCC 3 cut(s) 150, 306, 556
ApaLI GTGCAC 1 cut(s) 488
ApeKI GCWGC 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 285, 556
AsuHPI GGTGA 2 cut(s) 64, 193
AvaII GGWCC 1 cut(s) 285
BaeGI GKGCMC 1 cut(s) 492
BalI TGGCCA 1 cut(s) 152
BanII GRGCYC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 492
BbvCI CCTCAGC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 17, 567, 795
BceAI ACGGC 1 cut(s) 5
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 1 cut(s) 296
BciVI GTATCC 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 150, 743
BfuAI ACCTGC 1 cut(s) 40
BfuI GTATCC 1 cut(s) 406
BisI GCNGC 2 cut(s) 31, 353
BlsI GCNGC 2 cut(s) 32, 354
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 2 cut(s) 285, 556
BmiI GGNNCC 1 cut(s) 557
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 3 cut(s) 289, 385, 558
BpiI GAAGAC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 535
Bpu10I CCTNAGC 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 691
BsaAI YACGTR 1 cut(s) 646
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 147, 651
Bse1I ACTGG 2 cut(s) 455, 518
Bse3DI GCAATG 1 cut(s) 719
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 147, 651
BseGI GGATG 4 cut(s) 304, 661, 783, 787
BseMI GCAATG 1 cut(s) 719
BseMII CTCAG 2 cut(s) 294, 336
BseNI ACTGG 2 cut(s) 455, 518
BseRI GAGGAG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 492
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 3 cut(s) 152, 308, 558
BsiHKAI GWGCWC 1 cut(s) 492
BsiSI CCGG 1 cut(s) 356
BslFI GGGAC 2 cut(s) 129, 175
BsmAI GTCTC 2 cut(s) 150, 743
BsmFI GGGAC 2 cut(s) 129, 175
BsnI GGCC 3 cut(s) 152, 308, 558
Bso31I GGTCTC 1 cut(s) 150
Bsp1286I GDGCHC 2 cut(s) 333, 492
Bsp143I GATC 2 cut(s) 223, 310
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 5 cut(s) 163, 193, 353, 410, 498
BspANI GGCC 3 cut(s) 152, 308, 558
BspCNI CTCAG 2 cut(s) 295, 337
BspHI TCATGA 2 cut(s) 247, 564
BspLI GGNNCC 1 cut(s) 557
BspMI ACCTGC 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 719
BsrI ACTGG 2 cut(s) 455, 518
BssECI CCNNGG 2 cut(s) 147, 651
BssMI GATC 2 cut(s) 223, 310
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 754
Bst6I CTCTTC 1 cut(s) 693
BstBAI YACGTR 1 cut(s) 646
BstC8I GCNNGC 2 cut(s) 124, 600
BstDEI CTNAG 3 cut(s) 303, 345, 465
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 4 cut(s) 304, 661, 783, 787
BstKTI GATC 2 cut(s) 226, 313
BstMAI GTCTC 2 cut(s) 150, 743
BstMBI GATC 2 cut(s) 223, 310
BstMWI GCNNNNNNNGC 4 cut(s) 36, 55, 64, 608
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 3 cut(s) 190, 488, 602
BstSCI CCNGG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 492
BstSNI TACGTA 1 cut(s) 646
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 277
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 3 cut(s) 152, 308, 558
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 4 cut(s) 304, 661, 783, 787
BtsIMutI CAGTG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 124, 600
CciI TCATGA 2 cut(s) 247, 564
Cfr13I GGNCC 2 cut(s) 285, 556
Csp6I GTAC 1 cut(s) 292
CviAII CATG 7 cut(s) 46, 148, 187, 248, 485, 565, 599
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 3 cut(s) 303, 345, 465
DpnI GATC 2 cut(s) 225, 312
DpnII GATC 2 cut(s) 223, 310
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 693
EarI CTCTTC 1 cut(s) 693
EciI GGCGGA 1 cut(s) 152
Eco105I TACGTA 1 cut(s) 646
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 7 cut(s) 49, 151, 190, 251, 488, 568, 602
FaqI GGGAC 2 cut(s) 129, 175
FatI CATG 7 cut(s) 45, 147, 186, 247, 484, 564, 598
FauI CCCGC 2 cut(s) 200, 505
FblI GTMKAC 1 cut(s) 451
Fnu4HI GCNGC 2 cut(s) 31, 353
FokI GGATG 4 cut(s) 311, 668, 770, 774
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 2 cut(s) 31, 353
GluI GCNGC 2 cut(s) 31, 353
GsuI CTGGAG 1 cut(s) 535
HaeIII GGCC 3 cut(s) 152, 308, 558
HapII CCGG 1 cut(s) 356
Hin1II CATG 7 cut(s) 49, 151, 190, 251, 488, 568, 602
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HinfI GANTC 3 cut(s) 473, 584, 675
HpaII CCGG 1 cut(s) 356
HphI GGTGA 2 cut(s) 64, 193
Hpy166II GTNNAC 5 cut(s) 6, 90, 452, 490, 528
Hpy188I TCNGA 2 cut(s) 111, 241
Hpy188III TCNNGA 5 cut(s) 248, 367, 565, 588, 791
Hpy8I GTNNAC 5 cut(s) 6, 90, 452, 490, 528
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 754
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 8 cut(s) 49, 105, 122, 255, 490, 571, 598, 802
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 55, 64, 608
HpyF3I CTNAG 3 cut(s) 303, 345, 465
HpySE526I ACGT 1 cut(s) 645
Hsp92II CATG 7 cut(s) 49, 151, 190, 251, 488, 568, 602
Kzo9I GATC 2 cut(s) 223, 310
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 3 cut(s) 289, 385, 558
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 3 cut(s) 340, 646, 754
MalI GATC 2 cut(s) 225, 312
MboI GATC 2 cut(s) 223, 310
MboII GAAGA 4 cut(s) 4, 282, 710, 788
MhlI GDGCHC 2 cut(s) 333, 492
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 3 cut(s) 197, 550, 593
MluNI TGGCCA 1 cut(s) 152
MmeI TCCRAC 2 cut(s) 207, 501
MnlI CCTC 9 cut(s) 54, 63, 170, 190, 298, 462, 510, 646, 762
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 4 cut(s) 36, 55, 64, 608
NcoI CCATGG 1 cut(s) 147
NdeII GATC 2 cut(s) 223, 310
NlaIII CATG 7 cut(s) 49, 151, 190, 251, 488, 568, 602
NlaIV GGNNCC 1 cut(s) 557
NspI RCATGY 3 cut(s) 190, 488, 602
PaeI GCATGC 1 cut(s) 602
PagI TCATGA 2 cut(s) 247, 564
PaqCI CACCTGC 1 cut(s) 40
PciI ACATGT 2 cut(s) 186, 484
PfeI GAWTC 3 cut(s) 473, 584, 675
PkrI GCNGC 2 cut(s) 32, 354
Ppu21I YACGTR 1 cut(s) 646
PscI ACATGT 2 cut(s) 186, 484
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 557
PspPI GGNCC 2 cut(s) 285, 556
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 50
SatI GCNGC 2 cut(s) 31, 353
Sau3AI GATC 2 cut(s) 223, 310
Sau96I GGNCC 2 cut(s) 285, 556
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 2 cut(s) 333, 492
SfaNI GCATC 3 cut(s) 289, 385, 558
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
SnaBI TACGTA 1 cut(s) 646
SphI GCATGC 1 cut(s) 602
Sse9I AATT 3 cut(s) 197, 550, 593
SsiI CCGC 5 cut(s) 163, 193, 353, 410, 498
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 754
TaiI ACGT 1 cut(s) 648
TaqII GACCGA 1 cut(s) 302
TasI AATT 3 cut(s) 197, 550, 593
TauI GCSGC 1 cut(s) 355
TfiI GAWTC 3 cut(s) 473, 584, 675
TscAI CASTG 1 cut(s) 32
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 3 cut(s) 236, 738, 756
TspRI CASTG 1 cut(s) 32
VneI GTGCAC 1 cut(s) 488
VpaK11BI GGWCC 1 cut(s) 285
XceI RCATGY 3 cut(s) 190, 488, 602
XmiI GTMKAC 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.