Rh6CG196500

MRN-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0009611
Physical Location & Seq
Reverse (-)
32710210 .. 32710582
373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG196500.1

Sequence Viewer

Length: 276 bp
ATGTCCACCATCTTCTATGTCGTTCAATGCTGCCAATGCTCCACCATGCAGGTGAAGCAGAGGAAGCAGAGCAGTAAGAACAACAAGTGGACTTGTGTGGTCTGCAATCAAAAGCAGTCTGCACGCAAGGTGTTCGCTGAAAGCCTCATGGCTAGAGACCTCCGGCCCTTGGTCCAATCCTCCAACATGTCCTGCCAATTCACAAACCAACAACAGTACCACTATCGTGCCCTTGTTTCTGATGTTCATGAGTGCAATACCCAAAAGAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRNIP

Protein Analysis

91

Amino Acids

10.67

Weight (kDa)

9.63

Isoelectric Point (pI)

65.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRNIP PF15749 7 - 73 9.1e-16 MRN-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 40
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 1 cut(s) 26
AleI CACNNNNGTG 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 150
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 165, 172
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 232
BaeI ACNNNNGTAYC 2 cut(s) 200, 233
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 17
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 40
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 2 cut(s) 165, 172
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 169
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 1 cut(s) 166
Bso31I GGTCTC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 232
BspANI GGCC 1 cut(s) 166
BspHI TCATGA 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 150
BstMWI GCNNNNNNNGC 3 cut(s) 36, 55, 64
BstNSI RCATGY 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 166
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 124
CciI TCATGA 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 165, 172
Csp6I GTAC 1 cut(s) 217
CviAII CATG 4 cut(s) 46, 148, 187, 248
CviJI RGCY 3 cut(s) 144, 152, 166
CviKI_1 RGCY 3 cut(s) 144, 152, 166
CviQI GTAC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 4 cut(s) 49, 151, 190, 251
FaiI YATR 5 cut(s) 18, 47, 149, 188, 249
FatI CATG 4 cut(s) 45, 147, 186, 247
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 1 cut(s) 153
GluI GCNGC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 166
HapII CCGG 1 cut(s) 163
Hin1II CATG 4 cut(s) 49, 151, 190, 251
HpaII CCGG 1 cut(s) 163
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 2 cut(s) 6, 90
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 2 cut(s) 6, 90
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4V TGCA 4 cut(s) 49, 105, 122, 255
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 55, 64
Hsp92II CATG 4 cut(s) 49, 151, 190, 251
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 3 cut(s) 35, 176, 205
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 153
MboII GAAGA 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 4 cut(s) 54, 155, 170, 190
MslI CAYNNNNRTG 2 cut(s) 50, 225
MspI CCGG 1 cut(s) 163
MwoI GCNNNNNNNGC 3 cut(s) 36, 55, 64
NlaIII CATG 4 cut(s) 49, 151, 190, 251
NspI RCATGY 1 cut(s) 190
OliI CACNNNNGTG 1 cut(s) 225
PagI TCATGA 1 cut(s) 247
PaqCI CACCTGC 1 cut(s) 40
PciI ACATGT 1 cut(s) 186
PkrI GCNGC 1 cut(s) 32
PscI ACATGT 1 cut(s) 186
PspPI GGNCC 2 cut(s) 165, 172
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 2 cut(s) 50, 225
SatI GCNGC 1 cut(s) 31
Sau96I GGNCC 2 cut(s) 165, 172
SduI GDGCHC 1 cut(s) 232
SetI ASST 3 cut(s) 54, 132, 162
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 2 cut(s) 50, 225
Sse9I AATT 1 cut(s) 197
SspMI CTAG 1 cut(s) 153
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 216
TasI AATT 1 cut(s) 197
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 172
XceI RCATGY 1 cut(s) 190
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.