Rroxscaffold_7G00194950

MRN-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009611
Physical Location & Seq
Forward (+)
37084988 .. 37089383
4396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00194950.1

Sequence Viewer

Length: 771 bp
ATGAGTCACCTATTTGAGTATGTTAATCATTCAACAAATGATGCCATTGTTCCTTCATGCACGGAGATTACCGCACTAGTTCGTCCAAAAAAAAAGTATCGCGCCAAAAACAACAAGTGGACTTGTGTGGTCTGCAATCAGAAGCAGTCAATACGCAAGGTGTTCGCTGAAAGTCTCATGGCCAGAGACCTCCACCCCTTGGTCCAATCCTCCAACATGTCCCGCCAATTCATCGACCAACAACAACACCACGATCGTGCCCTTGTTTCTGATGTTCATGAGTGTAATACCCAAAAGAAAAGACGAACTGATTGGACCGAGTACCTGGATGCTGAGGCCGATCGGCTCACCGAGATGAAGAAAGAAGATGATGAAAGAAAGTGGGTGGGCTTCATTGTTTATCCATGTTACCTTTTCTTTGGTGGTTGGTTTTACAATTGTATTGGTCGTTGGGTAATTCAAGATGTGGAGAACTGGAAGTGCGAGTTGACAATAAACAAGAACACTTCAAATTGGAGCCATCTCATGATGCAAGATGACAAGGAATCAAGAAAATTGCATGCGACAAAGGCTTCACTTACAGGTGCTTCAAAGTGGAATGACTACGTAACCGAGGATGATAATGATGGCTTGAGAATCATCAACAGAAAAAGCCGTGAAGAGAATACAGAGCAATGGAGTAATGAAACAATAGCAAACTGTGAGTATGAGACAGCAACAACAGATGAGAGGGTAGAAGATGACATCCATCCTGATTTCTTGCAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRNIP

Protein Analysis

256

Amino Acids

30.24

Weight (kDa)

5.75

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRNIP PF15749 33 - 129 2.7e-13 MRN-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 199
AccII CGCG 1 cut(s) 102
AciI CCGC 2 cut(s) 72, 223
AcoI YGGCCR 1 cut(s) 180
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 199
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 4 cut(s) 33, 461, 510, 591
AhlI ACTAGT 1 cut(s) 76
AjnI CCWGG 1 cut(s) 324
AleI CACNNNNGTG 1 cut(s) 255
Alw26I GTCTC 3 cut(s) 179, 180, 704
AoxI GGCC 2 cut(s) 180, 336
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 202, 315
AsuHPI GGTGA 1 cut(s) 340
AvaII GGWCC 2 cut(s) 202, 315
BaeGI GKGCMC 1 cut(s) 262
BalI TGGCCA 1 cut(s) 182
BbvCI CCTCAGC 1 cut(s) 333
BccI CCATC 3 cut(s) 528, 620, 756
BceAI ACGGC 1 cut(s) 639
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BciT130I CCWGG 1 cut(s) 326
BcoDI GTCTC 3 cut(s) 179, 180, 704
BcuI ACTAGT 1 cut(s) 76
BfaI CTAG 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 326
Bme18I GGWCC 2 cut(s) 202, 315
BmgT120I GGNCC 2 cut(s) 202, 315
BmiI GGNNCC 1 cut(s) 518
BmrFI CCNGG 1 cut(s) 326
BmsI GCATC 3 cut(s) 31, 319, 519
Bpu10I CCTNAGC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 652
BsaAI YACGTR 1 cut(s) 607
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 198, 612
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 479
Bse3DI GCAATG 1 cut(s) 680
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 2 cut(s) 198, 612
BseGI GGATG 4 cut(s) 334, 622, 744, 748
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMI GCAATG 1 cut(s) 680
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 479
BseSI GKGCMC 1 cut(s) 262
Bsh1236I CGCG 1 cut(s) 102
Bsh1285I CGRYCG 2 cut(s) 256, 343
BshFI GGCC 2 cut(s) 182, 338
BsiEI CGRYCG 2 cut(s) 256, 343
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 3 cut(s) 179, 180, 704
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 2 cut(s) 182, 338
Bso31I GGTCTC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 2 cut(s) 253, 340
BspACI CCGC 2 cut(s) 72, 223
BspANI GGCC 2 cut(s) 182, 338
BspCNI CTCAG 1 cut(s) 325
BspFNI CGCG 1 cut(s) 102
BspHI TCATGA 2 cut(s) 277, 525
BspLI GGNNCC 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 680
BsrI ACTGG 1 cut(s) 479
BssECI CCNNGG 2 cut(s) 198, 612
BssMI GATC 2 cut(s) 253, 340
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 701
Bst6I CTCTTC 1 cut(s) 654
BstBAI YACGTR 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 561
BstDEI CTNAG 1 cut(s) 333
BstF5I GGATG 4 cut(s) 334, 622, 744, 748
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 2 cut(s) 256, 343
BstMAI GTCTC 3 cut(s) 179, 180, 704
BstMBI GATC 2 cut(s) 253, 340
BstMCI CGRYCG 2 cut(s) 256, 343
BstMWI GCNNNNNNNGC 1 cut(s) 569
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 2 cut(s) 220, 563
BstSCI CCNGG 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 262
BstSNI TACGTA 1 cut(s) 607
BstUI CGCG 1 cut(s) 102
BsuRI GGCC 2 cut(s) 182, 338
BtsCI GGATG 4 cut(s) 334, 622, 744, 748
Cac8I GCNNGC 1 cut(s) 561
CciI TCATGA 2 cut(s) 277, 525
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 202, 315
Csp6I GTAC 1 cut(s) 322
CviAII CATG 7 cut(s) 57, 178, 217, 278, 405, 526, 560
CviJI RGCY 9 cut(s) 182, 338, 346, 390, 519, 572, 630, 654, 768
CviKI_1 RGCY 9 cut(s) 182, 338, 346, 390, 519, 572, 630, 654, 768
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 1 cut(s) 333
DpnI GATC 2 cut(s) 255, 342
DpnII GATC 2 cut(s) 253, 340
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 654
EarI CTCTTC 1 cut(s) 654
Eco105I TACGTA 1 cut(s) 607
Eco130I CCWWGG 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 202, 315
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 7 cut(s) 60, 181, 220, 281, 408, 529, 563
FaiI YATR 9 cut(s) 21, 58, 179, 218, 279, 406, 527, 561, 708
FaqI GGGAC 1 cut(s) 205
FatI CATG 7 cut(s) 56, 177, 216, 277, 404, 525, 559
FauI CCCGC 1 cut(s) 230
FokI GGATG 4 cut(s) 341, 629, 731, 735
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 103
HaeIII GGCC 2 cut(s) 182, 338
HhaI GCGC 1 cut(s) 104
Hin1II CATG 7 cut(s) 60, 181, 220, 281, 408, 529, 563
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HinfI GANTC 3 cut(s) 4, 545, 636
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 2 cut(s) 120, 489
Hpy188I TCNGA 2 cut(s) 141, 271
Hpy188III TCNNGA 5 cut(s) 278, 461, 526, 549, 752
Hpy8I GTNNAC 2 cut(s) 120, 489
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 1 cut(s) 701
HpyCH4IV ACGT 1 cut(s) 606
HpyCH4V TGCA 5 cut(s) 60, 135, 532, 559, 763
HpyF10VI GCNNNNNNNGC 1 cut(s) 569
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 1 cut(s) 606
Hsp92II CATG 7 cut(s) 60, 181, 220, 281, 408, 529, 563
HspAI GCGC 1 cut(s) 102
Kzo9I GATC 2 cut(s) 253, 340
LmnI GCTCC 1 cut(s) 516
LpnPI CCDG 6 cut(s) 196, 311, 338, 460, 567, 765
LweI GCATC 3 cut(s) 31, 319, 519
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 606
MaeIII GTNAC 3 cut(s) 5, 407, 607
MalI GATC 2 cut(s) 255, 342
MboI GATC 2 cut(s) 253, 340
MboII GAAGA 4 cut(s) 370, 377, 671, 749
MfeI CAATTG 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 262
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 5 cut(s) 227, 436, 456, 511, 554
MluNI TGGCCA 1 cut(s) 182
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 5 cut(s) 200, 220, 328, 607, 723
Mox20I TGGCCA 1 cut(s) 182
MscI TGGCCA 1 cut(s) 182
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 2 cut(s) 255, 353
Msp20I TGGCCA 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 326
MunI CAATTG 1 cut(s) 436
MvaI CCWGG 1 cut(s) 326
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 569
NdeII GATC 2 cut(s) 253, 340
NlaIII CATG 7 cut(s) 60, 181, 220, 281, 408, 529, 563
NlaIV GGNNCC 1 cut(s) 518
NmuCI GTSAC 1 cut(s) 5
NspI RCATGY 2 cut(s) 220, 563
OliI CACNNNNGTG 1 cut(s) 255
PaeI GCATGC 1 cut(s) 563
PagI TCATGA 2 cut(s) 277, 525
PciI ACATGT 1 cut(s) 216
PfeI GAWTC 2 cut(s) 545, 636
PflMI CCANNNNNTGG 1 cut(s) 199
Ple19I CGATCG 2 cut(s) 256, 343
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Ppu21I YACGTR 1 cut(s) 607
PscI ACATGT 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 518
PspPI GGNCC 2 cut(s) 202, 315
PvuI CGATCG 2 cut(s) 256, 343
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 2 cut(s) 255, 353
SaqAI TTAA 1 cut(s) 24
Sau3AI GATC 2 cut(s) 253, 340
Sau96I GGNCC 2 cut(s) 202, 315
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 1 cut(s) 262
SetI ASST 7 cut(s) 12, 162, 192, 327, 414, 586, 609
SfaNI GCATC 3 cut(s) 31, 319, 519
SinI GGWCC 2 cut(s) 202, 315
SmiMI CAYNNNNRTG 2 cut(s) 255, 353
SmlI CTYRAG 1 cut(s) 631
SmoI CTYRAG 1 cut(s) 631
SnaBI TACGTA 1 cut(s) 607
SpeI ACTAGT 1 cut(s) 76
SphI GCATGC 1 cut(s) 563
Sse9I AATT 5 cut(s) 227, 436, 456, 511, 554
SsiI CCGC 2 cut(s) 72, 223
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 324
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 701
TaiI ACGT 1 cut(s) 609
TaqI TCGA 1 cut(s) 234
TaqII GACCGA 1 cut(s) 332
TasI AATT 5 cut(s) 227, 436, 456, 511, 554
TfiI GAWTC 2 cut(s) 545, 636
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TseFI GTSAC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 7 cut(s) 45, 220, 266, 371, 382, 387, 699
TspGWI ACGGA 1 cut(s) 77
Van91I CCANNNNNTGG 1 cut(s) 199
VpaK11BI GGWCC 2 cut(s) 202, 315
XceI RCATGY 2 cut(s) 220, 563
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.